[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_i386_1 #11048
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Sat Aug 6 09:01:37 UTC 2016
See <https://jenkins.debian.net/job/reproducible_builder_i386_1/11048/>
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+ cat tmp.stderr
+ rm -f tmp.stderr
+ for CPPName in '$CPPNames'
+ echo mx
mx
-+ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-1st/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 mx.cpp -o mx.o
++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-2nd/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 mx.cpp -o mx.o
+ cat tmp.stderr
+ cat tmp.stderr
+ rm -f tmp.stderr
+ for CPPName in '$CPPNames'
+ echo myutils
myutils
-+ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-1st/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 myutils.cpp -o myutils.o
++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-2nd/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 myutils.cpp -o myutils.o
+ cat tmp.stderr
+ cat tmp.stderr
+ rm -f tmp.stderr
+ for CPPName in '$CPPNames'
+ echo path
path
-+ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-1st/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 path.cpp -o path.o
++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-2nd/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 path.cpp -o path.o
+ cat tmp.stderr
+ cat tmp.stderr
+ rm -f tmp.stderr
+ for CPPName in '$CPPNames'
+ echo searchchime
searchchime
-+ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-1st/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 searchchime.cpp -o searchchime.o
++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-2nd/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 searchchime.cpp -o searchchime.o
+ cat tmp.stderr
+ cat tmp.stderr
+ rm -f tmp.stderr
+ for CPPName in '$CPPNames'
+ echo seqdb
seqdb
-+ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-1st/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 seqdb.cpp -o seqdb.o
++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-2nd/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 seqdb.cpp -o seqdb.o
+ cat tmp.stderr
+ cat tmp.stderr
+ rm -f tmp.stderr
+ for CPPName in '$CPPNames'
+ echo setnucmx
setnucmx
-+ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-1st/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 setnucmx.cpp -o setnucmx.o
++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-2nd/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 setnucmx.cpp -o setnucmx.o
+ cat tmp.stderr
+ cat tmp.stderr
+ rm -f tmp.stderr
+ for CPPName in '$CPPNames'
+ echo sfasta
sfasta
-+ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-1st/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 sfasta.cpp -o sfasta.o
++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-2nd/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 sfasta.cpp -o sfasta.o
+ cat tmp.stderr
+ cat tmp.stderr
+ rm -f tmp.stderr
+ for CPPName in '$CPPNames'
+ echo tracebackbit
tracebackbit
-+ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-1st/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 tracebackbit.cpp -o tracebackbit.o
++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-2nd/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 tracebackbit.cpp -o tracebackbit.o
+ cat tmp.stderr
+ cat tmp.stderr
+ rm -f tmp.stderr
+ for CPPName in '$CPPNames'
+ echo uchime_main
uchime_main
-+ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-1st/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 uchime_main.cpp -o uchime_main.o
++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-2nd/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 uchime_main.cpp -o uchime_main.o
+ cat tmp.stderr
+ cat tmp.stderr
+ rm -f tmp.stderr
+ for CPPName in '$CPPNames'
+ echo usort
usort
-+ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-1st/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 usort.cpp -o usort.o
++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-2nd/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 usort.cpp -o usort.o
+ cat tmp.stderr
+ cat tmp.stderr
+ rm -f tmp.stderr
+ for CPPName in '$CPPNames'
+ echo viterbifast
viterbifast
-+ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-1st/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 viterbifast.cpp -o viterbifast.o
++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-2nd/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 viterbifast.cpp -o viterbifast.o
+ cat tmp.stderr
+ cat tmp.stderr
+ rm -f tmp.stderr
+ for CPPName in '$CPPNames'
+ echo writechhit
writechhit
-+ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-1st/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 writechhit.cpp -o writechhit.o
++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build-2nd/mothur-1.38.0=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -O3 '-DRELEASE_DATE="\"7/20/2016\""' '-DVERSION="\"1.38.0\""' -O3 -DUSE_READLINE -DUSE_BOOST -I '"\"Enter_your_boost_include_path_here\""' -I. -I source/ -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/metastats/ -I source/randomforest/ -I source/read/ -I source/svm/ -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 writechhit.cpp -o writechhit.o
+ cat tmp.stderr
+ cat tmp.stderr
+ rm -f tmp.stderr
@@ -1810,22 +1822,22 @@
+ cat tmp.stderr
+ rm -f tmp.stderr
+ ls -lh uchime
--rwxr-xr-x 1 pbuilder1 pbuilder1 2.0M Aug 5 18:32 uchime
+-rwxrwxr-x 1 pbuilder2 pbuilder2 2.0M Sep 9 03:15 uchime
+ sum uchime
44993 2014
-g++ -fPIE -pie -Wl,-z,relro -Wl,-z,now -L "\"Enter_your_boost_library_path_here\"" -Lsource/ -Lsource/calculators/ -Lsource/chimera/ -Lsource/classifier/ -Lsource/clearcut/ -Lsource/commands/ -Lsource/communitytype/ -Lsource/datastructures/ -Lsource/metastats/ -Lsource/randomforest/ -Lsource/read/ -Lsource/svm/ -o mothur source/gotohoverlap.o source/validparameter.o source/heatmap.o source/nast.o source/randomnumber.o source/mothurout.o source/completelinkage.o source/averagelinkage.o source/collect.o source/seqnoise.o source/vsearchfileparser.o source/venn.o source/inputdata.o source/calcsparcc.o source/refchimeratest.o source/slibshuff.o source/trialSwap2.o source/sharedutilities.o source/consensus.o source/nastreport.o source/fileoutput.o source/cluster.o source/needlemanoverlap.o source/myseqdist.o source/clusterclassic.o source/subsample.o source/commandfactory.o source/rarecalc.o source/rarefact.o source/weightedlinkage.o source/wilcox.o source/progress.o source/linearalgebra.o source/singlelinkage.o source/trimoligos.o source/validcalculator.o source/optionparser.o source/mothur.o source/engine.o source/dlibshuff.o source/heatmapsim.o source/raredisplay.o source/commandoptionparser.o source/libshuff.o source/noalign.o source/overlap.o source/calculators/structchi2.o source/calculators/calculator.o source/calculators/sharedthetayc.o source/calculators/coverage.o source/calculators/invsimpson.o source/calculators/sharedmorisitahorn.o source/calculators/sharedkulczynski.o source/calculators/sharedthetan.o source/calculators/bergerparker.o source/calculators/sharedsobs.o source/calculators/parsimony.o source/calculators/shen.o source/calculators/sharedjclass.o source/calculators/canberra.o source/calculators/sharedrjsd.o source/calculators/smithwilson.o source/calculators/simpson.o source/calculators/mempearson.o source/calculators/spearman.o source/calculators/logsd.o source/calculators/memchord.o source/calculators/manhattan.o source/calculators/geom.o source/calculators/jackknife.o source/calculators/efron.o source/calculators/bootstrap.o source/calculators/hamming.o source/calculators/sharedsorclass.o source/calculators/shannon.o source/calculators/sharedbraycurtis.o source/calculators/prng.o source/calculators/shannonrange.o source/calculators/npshannon.o source/calculators/structeuclidean.o source/calculators/sharedchao1.o source/calculators/qstat.o source/calculators/chao1.o source/calculators/simpsoneven.o source/calculators/whittaker.o source/calculators/sharedsobscollectsummary.o source/calculators/gower.o source/calculators/structchord.o source/calculators/shannoneven.o source/calculators/sharedace.o source/calculators/bstick.o source/calculators/sharedjackknife.o source/calculators/sharedjest.o source/calculators/sharedsorabund.o source/calculators/sharedanderbergs.o source/calculators/goodscoverage.o source/calculators/odum.o source/calculators/structpearson.o source/calculators/heip.o source/calculators/ace.o source/calculators/sharedjsd.o source/calculators/memeuclidean.o source/calculators/memchi2.o source/calculators/sharedjabund.o source/calculators/unweighted.o source/calculators/boneh.o source/calculators/uvest.o source/calculators/sharedsorest.o source/calculators/speciesprofile.o source/calculators/soergel.o source/calculators/sharedkulczynskicody.o source/calculators/sharedmarczewski.o source/calculators/structkulczynski.o source/calculators/solow.o source/calculators/weighted.o source/calculators/sharedkstest.o source/calculators/hellinger.o source/calculators/sharedlennon.o source/calculators/sharedochiai.o source/chimera/pintail.o source/chimera/myPerseus.o source/chimera/bellerophon.o source/chimera/maligner.o source/chimera/chimeraslayer.o source/chimera/slayer.o source/chimera/ccode.o source/chimera/chimerarealigner.o source/chimera/chimeracheckrdp.o source/chimera/mothurchimera.o source/chimera/decalc.o source/classifier/classify.o source/classifier/phylosummary.o source/classifier/taxonomyequalizer.o source/classifier/kmernode.o source/classifier/phylotree.o source/classifier/aligntree.o source/classifier/kmertree.o source/classifier/knn.o source/classifier/alignnode.o source/classifier/bayesian.o source/classifier/taxonomynode.o source/clearcut/distclearcut.o source/clearcut/cmdargs.o source/clearcut/getopt_long.o source/clearcut/clearcut.o source/clearcut/fasta.o source/clearcut/dmat.o source/commands/clusterdoturcommand.o source/commands/setlogfilecommand.o source/commands/distancecommand.o source/commands/mergetaxsummarycommand.o source/commands/binsequencecommand.o source/commands/quitcommand.o source/commands/matrixoutputcommand.o source/commands/removegroupscommand.o source/commands/indicatorcommand.o source/commands/mgclustercommand.o source/commands/libshuffcommand.o source/commands/clusterfragmentscommand.o source/commands/treegroupscommand.o source/commands/kruskalwalliscommand.o source/commands/getotulabelscommand.o source/commands/removeseqscommand.o source/commands/mimarksattributescommand.o source/commands/renameseqscommand.o source/commands/setseedcommand.o source/commands/makegroupcommand.o source/commands/removerarecommand.o source/commands/makefilecommand.o source/commands/getdistscommand.o source/commands/sensspeccommand.o source/commands/summaryqualcommand.o source/commands/unifracweightedcommand.o source/commands/getcoremicrobiomecommand.o source/commands/splitgroupscommand.o source/commands/parselistscommand.o source/commands/normalizesharedcommand.o source/commands/countgroupscommand.o source/commands/heatmapsimcommand.o source/commands/clustercommand.o source/commands/degapseqscommand.o source/commands/homovacommand.o source/commands/summarytaxcommand.o source/commands/unifracunweightedcommand.o source/commands/seqerrorcommand.o source/commands/aligncommand.o source/commands/otuhierarchycommand.o source/commands/heatmapcommand.o source/commands/getrelabundcommand.o source/commands/getgroupscommand.o source/commands/removelineagecommand.o source/commands/chimerabellerophoncommand.o source/commands/venncommand.o source/commands/getsharedotucommand.o source/commands/classifyseqscommand.o source/commands/cooccurrencecommand.o source/commands/screenseqscommand.o source/commands/parsimonycommand.o source/commands/chimeraperseuscommand.o source/commands/sracommand.o source/commands/trimseqscommand.o source/commands/chimerapintailcommand.o source/commands/anosimcommand.o source/commands/makelefsecommand.o source/commands/sffmultiplecommand.o source/commands/splitabundcommand.o source/commands/primerdesigncommand.o source/commands/getlistcountcommand.o source/commands/catchallcommand.o source/commands/deconvolutecommand.o source/commands/mantelcommand.o source/commands/makecontigscommand.o source/commands/makelookupcommand.o source/commands/rarefactcommand.o source/commands/summarysharedcommand.o source/commands/getlineagecommand.o source/commands/nmdscommand.o source/commands/chimeravsearchcommand.o source/commands/getcommandinfocommand.o source/commands/collectsharedcommand.o source/commands/listotulabelscommand.o source/commands/getsabundcommand.o source/commands/lefsecommand.o source/commands/removeotulabelscommand.o source/commands/removeotuscommand.o source/commands/phylodiversitycommand.o source/commands/filtersharedcommand.o source/commands/filterseqscommand.o source/commands/shhhercommand.o source/commands/subsamplecommand.o source/commands/rarefactsharedcommand.o source/commands/secondarystructurecommand.o source/commands/pcacommand.o source/commands/seqsummarycommand.o source/commands/makebiomcommand.o source/commands/metastatscommand.o source/commands/getrabundcommand.o source/commands/chimeraslayercommand.o source/commands/chopseqscommand.o source/commands/sffinfocommand.o source/commands/getlabelcommand.o source/commands/consensusseqscommand.o source/commands/corraxescommand.o source/commands/preclustercommand.o source/commands/setdircommand.o source/commands/classifytreecommand.o source/commands/getseqscommand.o source/commands/deuniqueseqscommand.o source/commands/getmimarkspackagecommand.o source/commands/setcurrentcommand.o source/commands/getmetacommunitycommand.o source/commands/sharedcommand.o source/commands/mergefilecommand.o source/commands/shhhseqscommand.o source/commands/pcoacommand.o source/commands/biominfocommand.o source/commands/classifyrfsharedcommand.o source/commands/getgroupcommand.o source/commands/makefastqcommand.o source/commands/helpcommand.o source/commands/pcrseqscommand.o source/commands/systemcommand.o source/commands/deuniquetreecommand.o source/commands/trimflowscommand.o source/commands/createdatabasecommand.o source/commands/sortseqscommand.o source/commands/otuassociationcommand.o source/commands/removedistscommand.o source/commands/parsefastaqcommand.o source/commands/amovacommand.o source/commands/renamefilecommand.o source/commands/classifyotucommand.o source/commands/clearcutcommand.o source/commands/classifysvmsharedcommand.o source/commands/countseqscommand.o source/commands/chimerauchimecommand.o source/commands/mergesfffilecommand.o source/commands/chimeracheckcommand.o source/commands/clustersplitcommand.o source/commands/pairwiseseqscommand.o source/commands/mergegroupscommand.o source/commands/getoturepcommand.o source/commands/nocommands.o source/commands/sparcccommand.o source/commands/phylotypecommand.o source/commands/newcommandtemplate.o source/commands/summarycommand.o source/commands/reversecommand.o source/commands/getcurrentcommand.o source/commands/collectcommand.o source/commands/chimeraccodecommand.o source/commands/getotuscommand.o source/commands/listseqscommand.o source/communitytype/communitytype.o source/communitytype/pam.o source/communitytype/kmeans.o source/communitytype/qFinderDMM.o source/datastructures/suffixdb.o source/datastructures/rabundvector.o source/datastructures/sharedordervector.o source/datastructures/fastamap.o source/datastructures/distancedb.o source/datastructures/sharedlistvector.o source/datastructures/alignment.o source/datastructures/kmer.o source/datastructures/nameassignment.o source/datastructures/fastqread.o source/datastructures/suffixnodes.o source/datastructures/flowdata.o source/datastructures/tree.o source/datastructures/oligos.o source/datastructures/sparsedistancematrix.o source/datastructures/kmeralign.o source/datastructures/sparsematrix.o source/datastructures/alignmentdb.o source/datastructures/fullmatrix.o source/datastructures/blastalign.o source/datastructures/alignmentcell.o source/datastructures/sabundvector.o source/datastructures/suffixtree.o source/datastructures/blastdb.o source/datastructures/treenode.o source/datastructures/qualityscores.o source/datastructures/groupmap.o source/datastructures/sequenceparser.o source/datastructures/reportfile.o source/datastructures/sequencecountparser.o source/datastructures/counttable.o source/datastructures/treemap.o source/datastructures/kmerdb.o source/datastructures/sharedrabundvector.o source/datastructures/sharedrabundfloatvector.o source/datastructures/ordervector.o source/datastructures/sequence.o source/datastructures/sequencedb.o source/datastructures/database.o source/datastructures/designmap.o source/datastructures/sharedsabundvector.o source/datastructures/listvector.o source/metastats/mothurfisher.o source/metastats/mothurmetastats.o source/randomforest/regularizeddecisiontree.o source/randomforest/rftreenode.o source/randomforest/decisiontree.o source/randomforest/abstractdecisiontree.o source/randomforest/randomforest.o source/randomforest/forest.o source/read/readblast.o source/read/formatcolumn.o source/read/splitmatrix.o source/read/readphylipvector.o source/read/readcolumn.o source/read/readcluster.o source/read/readtree.o source/read/formatphylip.o source/read/treereader.o source/read/readphylip.o source/svm/svm.o -lreadline -lboost_iostreams -lz
-make[2]: Leaving directory '/build-1st/mothur-1.38.0'
+g++ -fPIE -pie -Wl,-z,relro -Wl,-z,now -L "\"Enter_your_boost_library_path_here\"" -Lsource/ -Lsource/calculators/ -Lsource/chimera/ -Lsource/classifier/ -Lsource/clearcut/ -Lsource/commands/ -Lsource/communitytype/ -Lsource/datastructures/ -Lsource/metastats/ -Lsource/randomforest/ -Lsource/read/ -Lsource/svm/ -o mothur source/randomnumber.o source/gotohoverlap.o source/validparameter.o source/heatmap.o source/nast.o source/mothurout.o source/completelinkage.o source/averagelinkage.o source/seqnoise.o source/venn.o source/inputdata.o source/calcsparcc.o source/clusterclassic.o source/vsearchfileparser.o source/weightedlinkage.o source/slibshuff.o source/collect.o source/trialSwap2.o source/sharedutilities.o source/consensus.o source/nastreport.o source/fileoutput.o source/cluster.o source/refchimeratest.o source/wilcox.o source/needlemanoverlap.o source/myseqdist.o source/subsample.o source/commandfactory.o source/rarecalc.o source/rarefact.o source/progress.o source/singlelinkage.o source/trimoligos.o source/validcalculator.o source/optionparser.o source/mothur.o source/engine.o source/linearalgebra.o source/dlibshuff.o source/heatmapsim.o source/raredisplay.o source/commandoptionparser.o source/libshuff.o source/noalign.o source/overlap.o source/calculators/calculator.o source/calculators/prng.o source/calculators/sharedthetayc.o source/calculators/coverage.o source/calculators/sharedmorisitahorn.o source/calculators/sharedace.o source/calculators/qstat.o source/calculators/bergerparker.o source/calculators/sharedrjsd.o source/calculators/parsimony.o source/calculators/shen.o source/calculators/canberra.o source/calculators/gower.o source/calculators/smithwilson.o source/calculators/sharedbraycurtis.o source/calculators/hamming.o source/calculators/mempearson.o source/calculators/logsd.o source/calculators/sharedkulczynskicody.o source/calculators/memchord.o source/calculators/manhattan.o source/calculators/geom.o source/calculators/jackknife.o source/calculators/efron.o source/calculators/bootstrap.o source/calculators/sharedsobs.o source/calculators/invsimpson.o source/calculators/sharedthetan.o source/calculators/sharedsorclass.o source/calculators/boneh.o source/calculators/npshannon.o source/calculators/structeuclidean.o source/calculators/sharedchao1.o source/calculators/unweighted.o source/calculators/sharedjabund.o source/calculators/chao1.o source/calculators/simpsoneven.o source/calculators/whittaker.o source/calculators/shannon.o source/calculators/structkulczynski.o source/calculators/sharedsobscollectsummary.o source/calculators/spearman.o source/calculators/structchord.o source/calculators/shannoneven.o source/calculators/bstick.o source/calculators/sharedjackknife.o source/calculators/solow.o source/calculators/sharedjest.o source/calculators/sharedkulczynski.o source/calculators/odum.o source/calculators/sharedanderbergs.o source/calculators/goodscoverage.o source/calculators/structpearson.o source/calculators/heip.o source/calculators/ace.o source/calculators/sharedjsd.o source/calculators/uvest.o source/calculators/memeuclidean.o source/calculators/memchi2.o source/calculators/structchi2.o source/calculators/sharedsorest.o source/calculators/speciesprofile.o source/calculators/simpson.o source/calculators/sharedjclass.o source/calculators/shannonrange.o source/calculators/sharedmarczewski.o source/calculators/sharedsorabund.o source/calculators/weighted.o source/calculators/sharedkstest.o source/calculators/hellinger.o source/calculators/sharedlennon.o source/calculators/sharedochiai.o source/calculators/soergel.o source/chimera/pintail.o source/chimera/myPerseus.o source/chimera/bellerophon.o source/chimera/maligner.o source/chimera/chimeraslayer.o source/chimera/chimerarealigner.o source/chimera/slayer.o source/chimera/ccode.o source/chimera/chimeracheckrdp.o source/chimera/mothurchimera.o source/chimera/decalc.o source/classifier/classify.o source/classifier/phylosummary.o source/classifier/taxonomyequalizer.o source/classifier/kmernode.o source/classifier/phylotree.o source/classifier/aligntree.o source/classifier/kmertree.o source/classifier/knn.o source/classifier/alignnode.o source/classifier/bayesian.o source/classifier/taxonomynode.o source/clearcut/distclearcut.o source/clearcut/clearcut.o source/clearcut/fasta.o source/clearcut/dmat.o source/clearcut/getopt_long.o source/clearcut/cmdargs.o source/commands/getlistcountcommand.o source/commands/distancecommand.o source/commands/mergetaxsummarycommand.o source/commands/binsequencecommand.o source/commands/quitcommand.o source/commands/subsamplecommand.o source/commands/indicatorcommand.o source/commands/seqsummarycommand.o source/commands/clusterfragmentscommand.o source/commands/treegroupscommand.o source/commands/kruskalwalliscommand.o source/commands/getotulabelscommand.o source/commands/removeseqscommand.o source/commands/mimarksattributescommand.o source/commands/renameseqscommand.o source/commands/makegroupcommand.o source/commands/deuniqueseqscommand.o source/commands/classifyseqscommand.o source/commands/makefilecommand.o source/commands/getdistscommand.o source/commands/listotulabelscommand.o source/commands/sensspeccommand.o source/commands/summaryqualcommand.o source/commands/unifracweightedcommand.o source/commands/getcoremicrobiomecommand.o source/commands/createdatabasecommand.o source/commands/splitgroupscommand.o source/commands/sffmultiplecommand.o source/commands/parselistscommand.o source/commands/normalizesharedcommand.o source/commands/countgroupscommand.o source/commands/heatmapsimcommand.o source/commands/clustercommand.o source/commands/summarytaxcommand.o source/commands/unifracunweightedcommand.o source/commands/systemcommand.o source/commands/seqerrorcommand.o source/commands/aligncommand.o source/commands/chimerabellerophoncommand.o source/commands/removerarecommand.o source/commands/otuhierarchycommand.o source/commands/trimflowscommand.o source/commands/getrelabundcommand.o source/commands/degapseqscommand.o source/commands/removelineagecommand.o source/commands/venncommand.o source/commands/getsharedotucommand.o source/commands/parsefastaqcommand.o source/commands/rarefactcommand.o source/commands/cooccurrencecommand.o source/commands/screenseqscommand.o source/commands/setdircommand.o source/commands/parsimonycommand.o source/commands/sracommand.o source/commands/mgclustercommand.o source/commands/splitabundcommand.o source/commands/primerdesigncommand.o source/commands/getrabundcommand.o source/commands/catchallcommand.o source/commands/getgroupscommand.o source/commands/heatmapcommand.o source/commands/deconvolutecommand.o source/commands/mantelcommand.o source/commands/matrixoutputcommand.o source/commands/makecontigscommand.o source/commands/makelookupcommand.o source/commands/summarysharedcommand.o source/commands/getlineagecommand.o source/commands/nmdscommand.o source/commands/chimeravsearchcommand.o source/commands/trimseqscommand.o source/commands/collectsharedcommand.o source/commands/getsabundcommand.o source/commands/lefsecommand.o source/commands/removeotulabelscommand.o source/commands/phylodiversitycommand.o source/commands/filtersharedcommand.o source/commands/filterseqscommand.o source/commands/shhhercommand.o source/commands/removegroupscommand.o source/commands/mergesfffilecommand.o source/commands/secondarystructurecommand.o source/commands/pcacommand.o source/commands/clustersplitcommand.o source/commands/makebiomcommand.o source/commands/metastatscommand.o source/commands/chimeraslayercommand.o source/commands/chopseqscommand.o source/commands/sffinfocommand.o source/commands/getlabelcommand.o source/commands/consensusseqscommand.o source/commands/corraxescommand.o source/commands/preclustercommand.o source/commands/classifytreecommand.o source/commands/getseqscommand.o source/commands/setcurrentcommand.o source/commands/getmetacommunitycommand.o source/commands/setseedcommand.o source/commands/sharedcommand.o source/commands/mergefilecommand.o source/commands/getcommandinfocommand.o source/commands/biominfocommand.o source/commands/classifyrfsharedcommand.o source/commands/makefastqcommand.o source/commands/reversecommand.o source/commands/pcrseqscommand.o source/commands/anosimcommand.o source/commands/chimeraperseuscommand.o source/commands/deuniquetreecommand.o source/commands/makelefsecommand.o source/commands/classifyotucommand.o source/commands/chimerapintailcommand.o source/commands/sortseqscommand.o source/commands/otuassociationcommand.o source/commands/removedistscommand.o source/commands/renamefilecommand.o source/commands/homovacommand.o source/commands/amovacommand.o source/commands/clearcutcommand.o source/commands/classifysvmsharedcommand.o source/commands/countseqscommand.o source/commands/chimerauchimecommand.o source/commands/helpcommand.o source/commands/libshuffcommand.o source/commands/getgroupcommand.o source/commands/chimeracheckcommand.o source/commands/getmimarkspackagecommand.o source/commands/pairwiseseqscommand.o source/commands/mergegroupscommand.o source/commands/getoturepcommand.o source/commands/nocommands.o source/commands/sparcccommand.o source/commands/phylotypecommand.o source/commands/rarefactsharedcommand.o source/commands/newcommandtemplate.o source/commands/pcoacommand.o source/commands/shhhseqscommand.o source/commands/summarycommand.o source/commands/getcurrentcommand.o source/commands/setlogfilecommand.o source/commands/collectcommand.o source/commands/chimeraccodecommand.o source/commands/getotuscommand.o source/commands/removeotuscommand.o source/commands/listseqscommand.o source/commands/clusterdoturcommand.o source/communitytype/communitytype.o source/communitytype/pam.o source/communitytype/kmeans.o source/communitytype/qFinderDMM.o source/datastructures/ordervector.o source/datastructures/suffixdb.o source/datastructures/fastamap.o source/datastructures/distancedb.o source/datastructures/alignment.o source/datastructures/kmer.o source/datastructures/sharedordervector.o source/datastructures/nameassignment.o source/datastructures/fastqread.o source/datastructures/suffixnodes.o source/datastructures/flowdata.o source/datastructures/oligos.o source/datastructures/kmeralign.o source/datastructures/sequenceparser.o source/datastructures/sparsematrix.o source/datastructures/alignmentdb.o source/datastructures/fullmatrix.o source/datastructures/blastalign.o source/datastructures/treenode.o source/datastructures/alignmentcell.o source/datastructures/sabundvector.o source/datastructures/suffixtree.o source/datastructures/sharedlistvector.o source/datastructures/qualityscores.o source/datastructures/groupmap.o source/datastructures/sparsedistancematrix.o source/datastructures/sequencecountparser.o source/datastructures/rabundvector.o source/datastructures/counttable.o source/datastructures/treemap.o source/datastructures/kmerdb.o source/datastructures/blastdb.o source/datastructures/sharedrabundvector.o source/datastructures/sharedrabundfloatvector.o source/datastructures/sequence.o source/datastructures/sequencedb.o source/datastructures/database.o source/datastructures/designmap.o source/datastructures/sharedsabundvector.o source/datastructures/tree.o source/datastructures/reportfile.o source/datastructures/listvector.o source/metastats/mothurfisher.o source/metastats/mothurmetastats.o source/randomforest/regularizeddecisiontree.o source/randomforest/rftreenode.o source/randomforest/abstractdecisiontree.o source/randomforest/decisiontree.o source/randomforest/randomforest.o source/randomforest/forest.o source/read/formatcolumn.o source/read/splitmatrix.o source/read/readphylipvector.o source/read/readblast.o source/read/readcluster.o source/read/treereader.o source/read/readtree.o source/read/formatphylip.o source/read/readcolumn.o source/read/readphylip.o source/svm/svm.o -lreadline -lboost_iostreams -lz
+make[2]: Verzeichnis „/build-2nd/mothur-1.38.0“ wird verlassen
# cp mothur mothur-mpi # XXX: debug
-make[1]: Leaving directory '/build-1st/mothur-1.38.0'
+make[1]: Verzeichnis „/build-2nd/mothur-1.38.0“ wird verlassen
dh_auto_test -O--parallel
fakeroot debian/rules binary
dh binary --parallel
dh_testroot -O--parallel
dh_prep -O--parallel
debian/rules override_dh_auto_install
-make[1]: Entering directory '/build-1st/mothur-1.38.0'
+make[1]: Verzeichnis „/build-2nd/mothur-1.38.0“ wird betreten
true
-make[1]: Leaving directory '/build-1st/mothur-1.38.0'
+make[1]: Verzeichnis „/build-2nd/mothur-1.38.0“ wird verlassen
dh_install -O--parallel
dh_installdocs -O--parallel
dh_installchangelogs -O--parallel
@@ -1849,10 +1861,10 @@
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -O--parallel
dh_builddeb -O--parallel
-dpkg-deb: building package 'mothur-dbgsym' in '../mothur-dbgsym_1.38.0-1_i386.deb'.
-dpkg-deb: building package 'mothur-mpi-dbgsym' in '../mothur-mpi-dbgsym_1.38.0-1_i386.deb'.
-dpkg-deb: building package 'mothur' in '../mothur_1.38.0-1_i386.deb'.
-dpkg-deb: building package 'mothur-mpi' in '../mothur-mpi_1.38.0-1_i386.deb'.
+dpkg-deb: Paket »mothur-dbgsym« wird in »../mothur-dbgsym_1.38.0-1_i386.deb« gebaut.
+dpkg-deb: Paket »mothur-mpi-dbgsym« wird in »../mothur-mpi-dbgsym_1.38.0-1_i386.deb« gebaut.
+dpkg-deb: Paket »mothur« wird in »../mothur_1.38.0-1_i386.deb« gebaut.
+dpkg-deb: Paket »mothur-mpi« wird in »../mothur-mpi_1.38.0-1_i386.deb« gebaut.
dpkg-distaddfile mothur_1.38.0-1_i386.buildinfo science optional
dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=any,all >../mothur_1.38.0-1_i386.changes
@@ -1860,6 +1872,9 @@
dpkg-source --after-build mothur-1.38.0
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/41999/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/41999/tmp/hooks/B01_cleanup finished
+W: no hooks of type I found -- ignoring
I: unmounting /sys filesystem
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
@@ -1867,6 +1882,6 @@
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/12505 and its subdirectories
-I: Current time: Fri Aug 5 18:36:28 GMT+12 2016
-I: pbuilder-time-stamp: 1470465388
+I: removing directory /srv/workspace/pbuilder/41999 and its subdirectories
+I: Current time: Sam Sep 9 03:18:16 GMT-14 2017
+I: pbuilder-time-stamp: 1504876696
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/testing/i386/mothur_1.38.0-1.diff: 96.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/testing/i386/mothur_1.38.0-1.diff.gz
b2/build.log: 95.0%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 95.1%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/testing/i386/mothur_1.38.0-1.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-2i4NkP2f/tmp.1l3FpdDxIL
+ mv /srv/reproducible-results/rbuild-debian-2i4NkP2f/tmp.1l3FpdDxIL /var/lib/jenkins/userContent/reproducible/debian/rbuild/testing/i386/mothur_1.38.0-1.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/testing/i386/mothur_1.38.0-1.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ call_diffoscope_on_buildinfo_files
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-2i4NkP2f
+ local TMPLOG=/srv/reproducible-results/rbuild-debian-2i4NkP2f/tmp.ZYr4Lk63v3
+ local TIMEOUT=120m
+ DBDSUITE=testing
+ '[' testing = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-2i4NkP2f -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/rbuild-debian-2i4NkP2f/dbd-tmp-5EaRrRJ
++ schroot --directory /srv/reproducible-results/rbuild-debian-2i4NkP2f -c source:jenkins-reproducible-testing-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 56'
++ echo diffoscope 56
++ grep '^E: 15binfmt: update-binfmts: unable to open'
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ log_info 'diffoscope 56 will be used to compare the two builds:'
+ _log I: 'diffoscope 56 will be used to compare the two builds:'
+ local prefix=I:
+ shift 1
++ date -u
+ tee -a /var/lib/jenkins/userContent/reproducible/debian/rbuild/testing/i386/mothur_1.38.0-1.rbuild.log
+ echo -e 'Sat Aug 6 06:55:21 UTC 2016 I: diffoscope 56 will be used to compare the two builds:'
Sat Aug 6 06:55:21 UTC 2016 I: diffoscope 56 will be used to compare the two builds:
+ set +e
+ set -x
+ timeout 120m nice schroot --directory /srv/reproducible-results/rbuild-debian-2i4NkP2f -c source:jenkins-reproducible-testing-diffoscope -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian-2i4NkP2f/dbd-tmp-5EaRrRJ ; diffoscope --html /srv/reproducible-results/rbuild-debian-2i4NkP2f/mothur_1.38.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian-2i4NkP2f/mothur_1.38.0-1.diffoscope.txt /srv/reproducible-results/rbuild-debian-2i4NkP2f/b1/mothur_1.38.0-1_i386.buildinfo /srv/reproducible-results/rbuild-debian-2i4NkP2f/b2/mothur_1.38.0-1_i386.buildinfo'
+ RESULT=124
++ grep '^E: 15binfmt: update-binfmts: unable to open' /srv/reproducible-results/rbuild-debian-2i4NkP2f/tmp.ZYr4Lk63v3
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ false
+ set +x
E: Caught signal ‘Terminated’: terminating immediately
E: Caught signal ‘Terminated’
Sat Aug 6 08:55:29 UTC 2016 E: mothur failed to build reproducibly in testing on i386.
Error: database is locked
Error: database is locked
Error: database is locked
Error: database is locked
Sat Aug 6 09:00:32 UTC 2016 I: Artifacts from this build have been preserved. They will be available for 24h only, so download them now.
WARNING: You shouldn't trust packages downloaded from this host, they can contain malware or the worst of your fears, packaged nicely in debian format.
If you are not afraid facing your fears while helping the world by investigating reproducible build issues, you can download the artifacts from the following location: https://tests.reproducible-builds.org/debian/artifacts/r00t-me/mothur_testing_tmp-EVObP/
/var/lib/jenkins/userContent/reproducible/debian/rbuild/testing/i386/mothur_1.38.0-1.rbuild.log: 94.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/testing/i386/mothur_1.38.0-1.rbuild.log.gz
INFO: Starting at 2016-08-06 09:00:35.544796
CRITICAL: Error executing this query:
CRITICAL: SELECT r.status, r.version, r.build_date FROM results AS r JOIN sources AS s ON r.package_id=s.id WHERE s.name="mothur" AND s.architecture="amd64" AND s.suite="testing"
Traceback (most recent call last):
File "<string>", line 2, in <module>
File "/srv/jenkins/bin/reproducible_common.py", line 747, in __init__
self._status[suite][arch] = Build(self.name, suite, arch)
File "/srv/jenkins/bin/reproducible_common.py", line 714, in __init__
self._get_package_status()
File "/srv/jenkins/bin/reproducible_common.py", line 723, in _get_package_status
result = query_db(query)[0]
File "/srv/jenkins/bin/reproducible_common.py", line 358, in query_db
cursor.execute(query)
sqlite3.OperationalError: database is locked
INFO: Finished at 2016-08-06 09:01:35.654016, took: 0:01:00.109325
Warning: cannot update html pages for mothur
Sat 6 Aug 09:01:36 UTC 2016 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-7knnEHrt, which will now be removed.
Build step 'Execute shell' marked build as failure
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