[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_8 #49018
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Thu Sep 1 14:12:34 UTC 2016
See <https://jenkins.debian.net/job/reproducible_builder_amd64_8/49018/>
------------------------------------------
[...truncated 7634 lines...]
+g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-2nd/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readGroups.o -c src/readGroups.cpp -Isrc
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
@@ -849,7 +862,7 @@
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-1st/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/fastQTL.o -c src/fastQTL.cpp -Isrc
+g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-2nd/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/fastQTL.o -c src/fastQTL.cpp -Isrc
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
@@ -881,7 +894,7 @@
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-1st/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutation.o -c src/analysisPermutation.cpp -Isrc
+g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-2nd/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutation.o -c src/analysisPermutation.cpp -Isrc
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
@@ -913,7 +926,7 @@
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-1st/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/mle.o -c src/mle.cpp -Isrc
+g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-2nd/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/mle.o -c src/mle.cpp -Isrc
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
@@ -945,7 +958,7 @@
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-1st/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readPhenotypes.o -c src/readPhenotypes.cpp -Isrc
+g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-2nd/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readPhenotypes.o -c src/readPhenotypes.cpp -Isrc
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
@@ -977,7 +990,7 @@
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-1st/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisMapping.o -c src/analysisMapping.cpp -Isrc
+g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-2nd/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisMapping.o -c src/analysisMapping.cpp -Isrc
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
@@ -1009,7 +1022,7 @@
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-1st/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/commands.o -c src/commands.cpp -Isrc
+g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-2nd/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/commands.o -c src/commands.cpp -Isrc
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
@@ -1041,7 +1054,7 @@
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-1st/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisNominal.o -c src/analysisNominal.cpp -Isrc
+g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-2nd/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisNominal.o -c src/analysisNominal.cpp -Isrc
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
@@ -1073,7 +1086,7 @@
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-1st/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/management.o -c src/management.cpp -Isrc
+g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-2nd/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/management.o -c src/management.cpp -Isrc
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
@@ -1105,7 +1118,7 @@
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-1st/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationPerGroup.o -c src/analysisPermutationPerGroup.cpp -Isrc
+g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-2nd/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationPerGroup.o -c src/analysisPermutationPerGroup.cpp -Isrc
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
@@ -1137,7 +1150,7 @@
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-1st/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/residualizer.o -c src/residualizer.cpp -Isrc
+g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-2nd/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/residualizer.o -c src/residualizer.cpp -Isrc
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
@@ -1169,8 +1182,8 @@
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-1st/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/tabix.o -c src/utils/tabix.cpp -Isrc
-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-1st/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/utils.o -c src/utils/utils.cpp -Isrc
+g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-2nd/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/tabix.o -c src/utils/tabix.cpp -Isrc
+g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-2nd/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/utils.o -c src/utils/utils.cpp -Isrc
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
@@ -1199,7 +1212,7 @@
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-1st/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationInteraction.o -c src/analysisPermutationInteraction.cpp -Isrc
+g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-2nd/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationInteraction.o -c src/analysisPermutationInteraction.cpp -Isrc
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
@@ -1231,7 +1244,7 @@
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-1st/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/df.o -c src/df.cpp -Isrc
+g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-2nd/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/df.o -c src/df.cpp -Isrc
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
@@ -1263,7 +1276,7 @@
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
-g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-1st/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationSequence.o -c src/analysisPermutationSequence.cpp -Isrc
+g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/build-2nd/fastqtl-2.184+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationSequence.o -c src/analysisPermutationSequence.cpp -Isrc
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
@@ -1296,8 +1309,8 @@
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
g++ -O3 -fPIE -pie -Wl,-z,relro -Wl,-z,now obj/readCovariates.o obj/readInclusionsExclusions.o obj/readGenotypes.o obj/readInteractions.o obj/readThresholds.o obj/readGroups.o obj/fastQTL.o obj/analysisPermutation.o obj/mle.o obj/readPhenotypes.o obj/analysisMapping.o obj/commands.o obj/analysisNominal.o obj/management.o obj/analysisPermutationPerGroup.o obj/residualizer.o obj/tabix.o obj/utils.o obj/analysisPermutationInteraction.o obj/df.o obj/analysisPermutationSequence.o /usr/lib/x86_64-linux-gnu/libhts.so -lRmath -lhts -lm -lz -lboost_iostreams -lboost_program_options -lgsl -lblas -o bin/fastQTL
-make[2]: Leaving directory '/build-1st/fastqtl-2.184+dfsg'
-cd /build-1st/fastqtl-2.184+dfsg/example/ && \
+make[2] : on quitte le répertoire « /build-2nd/fastqtl-2.184+dfsg »
+cd /build-2nd/fastqtl-2.184+dfsg/example/ && \
tar Jcvf examples.tar.xz * --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner
covariates.txt.gz
genotypes.vcf.gz
@@ -1305,7 +1318,7 @@
interaction.txt
phenotypes.bed.gz
phenotypes.bed.gz.tbi
-make[1]: Leaving directory '/build-1st/fastqtl-2.184+dfsg'
+make[1] : on quitte le répertoire « /build-2nd/fastqtl-2.184+dfsg »
dh_auto_test
fakeroot debian/rules binary
dlsym(acl_get_fd): /usr/lib/x86_64-linux-gnu/libfakeroot/libfakeroot-sysv.so: undefined symbol: acl_get_fd
@@ -2044,12 +2057,15 @@
dpkg-source --after-build fastqtl-2.184+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/39717/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/39717/tmp/hooks/B01_cleanup finished
+W: no hooks of type I found -- ignoring
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/50108 and its subdirectories
-I: Current time: Wed Oct 4 08:01:44 GMT+12 2017
-I: pbuilder-time-stamp: 1507147304
+I: removing directory /srv/workspace/pbuilder/39717 and its subdirectories
+I: Current time: vendredi 2 septembre 2016, 04:07:09 (UTC+1400)
+I: pbuilder-time-stamp: 1472738829
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/fastqtl_2.184+dfsg-4.diff: 87.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/fastqtl_2.184+dfsg-4.diff.gz
b2/build.log: 94.7%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 95.0%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/fastqtl_2.184+dfsg-4.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-2sff1Lyf/tmp.SAvWsi8ryv
+ mv /srv/reproducible-results/rbuild-debian-2sff1Lyf/tmp.SAvWsi8ryv /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/fastqtl_2.184+dfsg-4.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/fastqtl_2.184+dfsg-4.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ call_diffoscope_on_buildinfo_files
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-2sff1Lyf
+ local TMPLOG=/srv/reproducible-results/rbuild-debian-2sff1Lyf/tmp.gdsCJYYcH5
+ local TIMEOUT=120m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-2sff1Lyf -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/rbuild-debian-2sff1Lyf/dbd-tmp-kcdocpu
++ schroot --directory /srv/reproducible-results/rbuild-debian-2sff1Lyf -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 59'
++ echo diffoscope 59
++ grep '^E: 15binfmt: update-binfmts: unable to open'
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ log_info 'diffoscope 59 will be used to compare the two builds:'
+ _log I: 'diffoscope 59 will be used to compare the two builds:'
+ local prefix=I:
+ shift 1
+ tee -a /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/fastqtl_2.184+dfsg-4.rbuild.log
++ date -u
+ echo -e 'Thu Sep 1 14:07:14 UTC 2016 I: diffoscope 59 will be used to compare the two builds:'
Thu Sep 1 14:07:14 UTC 2016 I: diffoscope 59 will be used to compare the two builds:
+ set +e
+ set -x
+ timeout 120m nice schroot --directory /srv/reproducible-results/rbuild-debian-2sff1Lyf -c source:jenkins-reproducible-unstable-diffoscope -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian-2sff1Lyf/dbd-tmp-kcdocpu ; diffoscope --html /srv/reproducible-results/rbuild-debian-2sff1Lyf/fastqtl_2.184+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian-2sff1Lyf/fastqtl_2.184+dfsg-4.diffoscope.txt /srv/reproducible-results/rbuild-debian-2sff1Lyf/b1/fastqtl_2.184+dfsg-4_amd64.buildinfo /srv/reproducible-results/rbuild-debian-2sff1Lyf/b2/fastqtl_2.184+dfsg-4_amd64.buildinfo'
+ RESULT=0
++ grep '^E: 15binfmt: update-binfmts: unable to open' /srv/reproducible-results/rbuild-debian-2sff1Lyf/tmp.gdsCJYYcH5
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ false
+ set +x
__ _ _ _
/ _| __ _ ___| |_ __ _| |_| |
| |_ / _` / __| __/ _` | __| |
| _| (_| \__ \ || (_| | |_| |
|_| \__,_|___/\__\__, |\__|_|
|_|
Thu Sep 1 14:07:17 UTC 2016 I: diffoscope 59 found no differences in the changes files, and a .buildinfo file also exists.
Thu Sep 1 14:07:17 UTC 2016 I: fastqtl from unstable built successfully and reproducibly on amd64.
Error: database is locked
Error: database is locked
Error: database is locked
Error: database is locked
/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/fastqtl_2.184+dfsg-4.rbuild.log: 93.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/fastqtl_2.184+dfsg-4.rbuild.log.gz
INFO: Starting at 2016-09-01 14:11:33.237839
CRITICAL: SQLite database locked, could not execute query:
CRITICAL: "SELECT r.status, r.version, r.build_date FROM results AS r JOIN sources AS s ON r.package_id=s.id WHERE s.name="fastqtl" AND s.architecture="amd64" AND s.suite="testing""
CRITICAL: Exiting script.
INFO: Finished at 2016-09-01 14:12:33.332075, took: 0:01:00.094266
Warning: cannot update html pages for fastqtl
Thu 1 Sep 14:12:33 UTC 2016 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-1FdC8XpP, which will now be removed.
Build step 'Execute shell' marked build as failure
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