[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_armhf_14 #11205
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Fri Sep 2 08:48:35 UTC 2016
See <https://jenkins.debian.net/job/reproducible_builder_armhf_14/11205/>
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[...truncated 2909 lines...]
---------------------------------------------------
>>> C2H6 <<<
MPI processes: 1
MKL_NUM_THREADS:1
OMP_NUM_THREADS:1
command: ../src/molds < c2h6_am1_davidsonCIS_singlet_force.in > temp.dat
command: diff c2h6_am1_davidsonCIS_singlet_force.dat temp.dat | gawk '{if(($2!="SCF")&&($3!="iter")){print $0}}' | gawk '{if(($4!="time:")){print $0}}' | gawk '{if(($3!="Elapsed")){print $0}}' | gawk '{if(($2!="Elapsed")){print $0}}' | gawk '{if(($3!="Welcome")){print $0}}' | gawk '{if(($7!="residual")){print $0}}' | gawk '{if(($3!="mode(nmw):") ){print $0}}' | gawk '{if( !(($3=="mode(mw):")&&($4<6)) ){print $0}}' | gawk '{if(($3!="Heap:")){print $0}}' | egrep -v ^[-+]{3} | egrep ^[\<\>]
< Error: 2.983706e-07 8.119141e-06
> Error: 2.983706e-07 8.119143e-06
< Error: 2.946161e-07 8.016975e-06
> Error: 2.946203e-07 8.017091e-06
< Error: 2.291961e-07 6.236794e-06
> Error: 2.291963e-07 6.236799e-06
< Error: 3.309081e-07 9.004540e-06
> Error: 3.309042e-07 9.004435e-06
< Error: 3.183379e-07 8.662485e-06
> Error: 3.183379e-07 8.662486e-06
MPI processes: 1
MKL_NUM_THREADS:2
OMP_NUM_THREADS:2
command: ../src/molds < c2h6_am1_davidsonCIS_singlet_force.in > temp.dat
command: diff c2h6_am1_davidsonCIS_singlet_force.dat temp.dat | gawk '{if(($2!="SCF")&&($3!="iter")){print $0}}' | gawk '{if(($4!="time:")){print $0}}' | gawk '{if(($3!="Elapsed")){print $0}}' | gawk '{if(($2!="Elapsed")){print $0}}' | gawk '{if(($3!="Welcome")){print $0}}' | gawk '{if(($7!="residual")){print $0}}' | gawk '{if(($3!="mode(nmw):") ){print $0}}' | gawk '{if( !(($3=="mode(mw):")&&($4<6)) ){print $0}}' | gawk '{if(($3!="Heap:")){print $0}}' | egrep -v ^[-+]{3} | egrep ^[\<\>]
< Error: 2.983706e-07 8.119141e-06
> Error: 2.983706e-07 8.119143e-06
< Error: 2.946161e-07 8.016975e-06
> Error: 2.946203e-07 8.017092e-06
< Error: 2.291961e-07 6.236794e-06
> Error: 2.291963e-07 6.236799e-06
< Error: 3.309081e-07 9.004540e-06
> Error: 3.309042e-07 9.004435e-06
< Error: 3.183379e-07 8.662485e-06
> Error: 3.183379e-07 8.662486e-06
MPI processes: 2
MKL_NUM_THREADS:4
OMP_NUM_THREADS:2
command: mpirun -np 2 ../src/molds c2h6_am1_davidsonCIS_singlet_force.in > temp.dat
command: diff c2h6_am1_davidsonCIS_singlet_force.dat temp.dat | gawk '{if(($2!="SCF")&&($3!="iter")){print $0}}' | gawk '{if(($4!="time:")){print $0}}' | gawk '{if(($3!="Elapsed")){print $0}}' | gawk '{if(($2!="Elapsed")){print $0}}' | gawk '{if(($3!="Welcome")){print $0}}' | gawk '{if(($7!="residual")){print $0}}' | gawk '{if(($3!="mode(nmw):") ){print $0}}' | gawk '{if( !(($3=="mode(mw):")&&($4<6)) ){print $0}}' | gawk '{if(($3!="Heap:")){print $0}}' | egrep -v ^[-+]{3} | egrep ^[\<\>]
> --------------------------------------------------------------------------
> A deprecated MCA variable value was specified in the environment or
> on the command line. Deprecated MCA variables should be avoided;
> they may disappear in future releases.
> Deprecated variable: orte_rsh_agent
> New variable: plm_rsh_agent
> --------------------------------------------------------------------------
>
< Error: 2.983706e-07 8.119141e-06
> Error: 2.983706e-07 8.119143e-06
< Error: 2.946161e-07 8.016975e-06
> Error: 2.946203e-07 8.017092e-06
< Error: 2.291961e-07 6.236794e-06
> Error: 2.291963e-07 6.236799e-06
< Error: 3.309081e-07 9.004540e-06
> Error: 3.309042e-07 9.004435e-06
< Error: 3.183379e-07 8.662485e-06
> Error: 3.183379e-07 8.662486e-06
-------------------------------------------
---------- Test of PM3/HF ------------
-------------------------------------------
>>> CH4 <<<
MPI processes: 1
MKL_NUM_THREADS:1
OMP_NUM_THREADS:1
command: ../src/molds < ch4_pm3.in > temp.dat
command: diff ch4_pm3.dat temp.dat | gawk '{if(($2!="SCF")&&($3!="iter")){print $0}}' | gawk '{if(($4!="time:")){print $0}}' | gawk '{if(($3!="Elapsed")){print $0}}' | gawk '{if(($2!="Elapsed")){print $0}}' | gawk '{if(($3!="Welcome")){print $0}}' | gawk '{if(($7!="residual")){print $0}}' | gawk '{if(($3!="mode(nmw):") ){print $0}}' | gawk '{if( !(($3=="mode(mw):")&&($4<6)) ){print $0}}' | gawk '{if(($3!="Heap:")){print $0}}' | egrep -v ^[-+]{3} | egrep ^[\<\>]
MPI processes: 1
MKL_NUM_THREADS:2
OMP_NUM_THREADS:2
command: ../src/molds < ch4_pm3.in > temp.dat
command: diff ch4_pm3.dat temp.dat | gawk '{if(($2!="SCF")&&($3!="iter")){print $0}}' | gawk '{if(($4!="time:")){print $0}}' | gawk '{if(($3!="Elapsed")){print $0}}' | gawk '{if(($2!="Elapsed")){print $0}}' | gawk '{if(($3!="Welcome")){print $0}}' | gawk '{if(($7!="residual")){print $0}}' | gawk '{if(($3!="mode(nmw):") ){print $0}}' | gawk '{if( !(($3=="mode(mw):")&&($4<6)) ){print $0}}' | gawk '{if(($3!="Heap:")){print $0}}' | egrep -v ^[-+]{3} | egrep ^[\<\>]
MPI processes: 2
MKL_NUM_THREADS:4
OMP_NUM_THREADS:2
command: mpirun -np 2 ../src/molds ch4_pm3.in > temp.dat
command: diff ch4_pm3.dat temp.dat | gawk '{if(($2!="SCF")&&($3!="iter")){print $0}}' | gawk '{if(($4!="time:")){print $0}}' | gawk '{if(($3!="Elapsed")){print $0}}' | gawk '{if(($2!="Elapsed")){print $0}}' | gawk '{if(($3!="Welcome")){print $0}}' | gawk '{if(($7!="residual")){print $0}}' | gawk '{if(($3!="mode(nmw):") ){print $0}}' | gawk '{if( !(($3=="mode(mw):")&&($4<6)) ){print $0}}' | gawk '{if(($3!="Heap:")){print $0}}' | egrep -v ^[-+]{3} | egrep ^[\<\>]
> --------------------------------------------------------------------------
> A deprecated MCA variable value was specified in the environment or
> on the command line. Deprecated MCA variables should be avoided;
> they may disappear in future releases.
> Deprecated variable: orte_rsh_agent
> New variable: plm_rsh_agent
> --------------------------------------------------------------------------
>
>>> C2H6 <<<
MPI processes: 1
MKL_NUM_THREADS:1
OMP_NUM_THREADS:1
command: ../src/molds < c2h6_pm3.in > temp.dat
command: diff c2h6_pm3.dat temp.dat | gawk '{if(($2!="SCF")&&($3!="iter")){print $0}}' | gawk '{if(($4!="time:")){print $0}}' | gawk '{if(($3!="Elapsed")){print $0}}' | gawk '{if(($2!="Elapsed")){print $0}}' | gawk '{if(($3!="Welcome")){print $0}}' | gawk '{if(($7!="residual")){print $0}}' | gawk '{if(($3!="mode(nmw):") ){print $0}}' | gawk '{if( !(($3=="mode(mw):")&&($4<6)) ){print $0}}' | gawk '{if(($3!="Heap:")){print $0}}' | egrep -v ^[-+]{3} | egrep ^[\<\>]
MPI processes: 1
MKL_NUM_THREADS:2
OMP_NUM_THREADS:2
command: ../src/molds < c2h6_pm3.in > temp.dat
command: diff c2h6_pm3.dat temp.dat | gawk '{if(($2!="SCF")&&($3!="iter")){print $0}}' | gawk '{if(($4!="time:")){print $0}}' | gawk '{if(($3!="Elapsed")){print $0}}' | gawk '{if(($2!="Elapsed")){print $0}}' | gawk '{if(($3!="Welcome")){print $0}}' | gawk '{if(($7!="residual")){print $0}}' | gawk '{if(($3!="mode(nmw):") ){print $0}}' | gawk '{if( !(($3=="mode(mw):")&&($4<6)) ){print $0}}' | gawk '{if(($3!="Heap:")){print $0}}' | egrep -v ^[-+]{3} | egrep ^[\<\>]
MPI processes: 2
MKL_NUM_THREADS:4
OMP_NUM_THREADS:2
command: mpirun -np 2 ../src/molds c2h6_pm3.in > temp.dat
command: diff c2h6_pm3.dat temp.dat | gawk '{if(($2!="SCF")&&($3!="iter")){print $0}}' | gawk '{if(($4!="time:")){print $0}}' | gawk '{if(($3!="Elapsed")){print $0}}' | gawk '{if(($2!="Elapsed")){print $0}}' | gawk '{if(($3!="Welcome")){print $0}}' | gawk '{if(($7!="residual")){print $0}}' | gawk '{if(($3!="mode(nmw):") ){print $0}}' | gawk '{if( !(($3=="mode(mw):")&&($4<6)) ){print $0}}' | gawk '{if(($3!="Heap:")){print $0}}' | egrep -v ^[-+]{3} | egrep ^[\<\>]
> --------------------------------------------------------------------------
> A deprecated MCA variable value was specified in the environment or
> on the command line. Deprecated MCA variables should be avoided;
> they may disappear in future releases.
> Deprecated variable: orte_rsh_agent
> New variable: plm_rsh_agent
> --------------------------------------------------------------------------
>
---------------------------------------------------
---------- Test of PM3/CIS-singlet ---------
---------- Without Davidson for the CIS ---------
---------------------------------------------------
>>> CH4 <<<
MPI processes: 1
MKL_NUM_THREADS:1
OMP_NUM_THREADS:1
command: ../src/molds < ch4_pm3_directCIS_singlet.in > temp.dat
command: diff ch4_pm3_directCIS_singlet.dat temp.dat | gawk '{if(($2!="SCF")&&($3!="iter")){print $0}}' | gawk '{if(($4!="time:")){print $0}}' | gawk '{if(($3!="Elapsed")){print $0}}' | gawk '{if(($2!="Elapsed")){print $0}}' | gawk '{if(($3!="Welcome")){print $0}}' | gawk '{if(($7!="residual")){print $0}}' | gawk '{if(($3!="mode(nmw):") ){print $0}}' | gawk '{if( !(($3=="mode(mw):")&&($4<6)) ){print $0}}' | gawk '{if(($3!="Heap:")){print $0}}' | egrep -v ^[-+]{3} | egrep ^[\<\>]
MPI processes: 1
MKL_NUM_THREADS:2
OMP_NUM_THREADS:2
command: ../src/molds < ch4_pm3_directCIS_singlet.in > temp.dat
command: diff ch4_pm3_directCIS_singlet.dat temp.dat | gawk '{if(($2!="SCF")&&($3!="iter")){print $0}}' | gawk '{if(($4!="time:")){print $0}}' | gawk '{if(($3!="Elapsed")){print $0}}' | gawk '{if(($2!="Elapsed")){print $0}}' | gawk '{if(($3!="Welcome")){print $0}}' | gawk '{if(($7!="residual")){print $0}}' | gawk '{if(($3!="mode(nmw):") ){print $0}}' | gawk '{if( !(($3=="mode(mw):")&&($4<6)) ){print $0}}' | gawk '{if(($3!="Heap:")){print $0}}' | egrep -v ^[-+]{3} | egrep ^[\<\>]
MPI processes: 2
MKL_NUM_THREADS:4
OMP_NUM_THREADS:2
command: mpirun -np 2 ../src/molds ch4_pm3_directCIS_singlet.in > temp.dat
command: diff ch4_pm3_directCIS_singlet.dat temp.dat | gawk '{if(($2!="SCF")&&($3!="iter")){print $0}}' | gawk '{if(($4!="time:")){print $0}}' | gawk '{if(($3!="Elapsed")){print $0}}' | gawk '{if(($2!="Elapsed")){print $0}}' | gawk '{if(($3!="Welcome")){print $0}}' | gawk '{if(($7!="residual")){print $0}}' | gawk '{if(($3!="mode(nmw):") ){print $0}}' | gawk '{if( !(($3=="mode(mw):")&&($4<6)) ){print $0}}' | gawk '{if(($3!="Heap:")){print $0}}' | egrep -v ^[-+]{3} | egrep ^[\<\>]
> --------------------------------------------------------------------------
> A deprecated MCA variable value was specified in the environment or
> on the command line. Deprecated MCA variables should be avoided;
> they may disappear in future releases.
> Deprecated variable: orte_rsh_agent
> New variable: plm_rsh_agent
> --------------------------------------------------------------------------
>
>>> C2H6 <<<
MPI processes: 1
MKL_NUM_THREADS:1
OMP_NUM_THREADS:1
command: ../src/molds < c2h6_pm3_directCIS_singlet.in > temp.dat
command: diff c2h6_pm3_directCIS_singlet.dat temp.dat | gawk '{if(($2!="SCF")&&($3!="iter")){print $0}}' | gawk '{if(($4!="time:")){print $0}}' | gawk '{if(($3!="Elapsed")){print $0}}' | gawk '{if(($2!="Elapsed")){print $0}}' | gawk '{if(($3!="Welcome")){print $0}}' | gawk '{if(($7!="residual")){print $0}}' | gawk '{if(($3!="mode(nmw):") ){print $0}}' | gawk '{if( !(($3=="mode(mw):")&&($4<6)) ){print $0}}' | gawk '{if(($3!="Heap:")){print $0}}' | egrep -v ^[-+]{3} | egrep ^[\<\>]
MPI processes: 1
MKL_NUM_THREADS:2
OMP_NUM_THREADS:2
command: ../src/molds < c2h6_pm3_directCIS_singlet.in > temp.dat
command: diff c2h6_pm3_directCIS_singlet.dat temp.dat | gawk '{if(($2!="SCF")&&($3!="iter")){print $0}}' | gawk '{if(($4!="time:")){print $0}}' | gawk '{if(($3!="Elapsed")){print $0}}' | gawk '{if(($2!="Elapsed")){print $0}}' | gawk '{if(($3!="Welcome")){print $0}}' | gawk '{if(($7!="residual")){print $0}}' | gawk '{if(($3!="mode(nmw):") ){print $0}}' | gawk '{if( !(($3=="mode(mw):")&&($4<6)) ){print $0}}' | gawk '{if(($3!="Heap:")){print $0}}' | egrep -v ^[-+]{3} | egrep ^[\<\>]
MPI processes: 2
MKL_NUM_THREADS:4
OMP_NUM_THREADS:2
command: mpirun -np 2 ../src/molds c2h6_pm3_directCIS_singlet.in > temp.dat
command: diff c2h6_pm3_directCIS_singlet.dat temp.dat | gawk '{if(($2!="SCF")&&($3!="iter")){print $0}}' | gawk '{if(($4!="time:")){print $0}}' | gawk '{if(($3!="Elapsed")){print $0}}' | gawk '{if(($2!="Elapsed")){print $0}}' | gawk '{if(($3!="Welcome")){print $0}}' | gawk '{if(($7!="residual")){print $0}}' | gawk '{if(($3!="mode(nmw):") ){print $0}}' | gawk '{if( !(($3=="mode(mw):")&&($4<6)) ){print $0}}' | gawk '{if(($3!="Heap:")){print $0}}' | egrep -v ^[-+]{3} | egrep ^[\<\>]
> --------------------------------------------------------------------------
> A deprecated MCA variable value was specified in the environment or
> on the command line. Deprecated MCA variables should be avoided;
> they may disappear in future releases.
> Deprecated variable: orte_rsh_agent
> New variable: plm_rsh_agent
> --------------------------------------------------------------------------
>
---------------------------------------------------
---------- Test of PM3/CIS-singlet ---------
---------- With Davidson for the CIS ---------
---------------------------------------------------
>>> CH4 <<<
MPI processes: 1
MKL_NUM_THREADS:1
OMP_NUM_THREADS:1
command: ../src/molds < ch4_pm3_davidsonCIS_singlet.in > temp.dat
command: diff ch4_pm3_davidsonCIS_singlet.dat temp.dat | gawk '{if(($2!="SCF")&&($3!="iter")){print $0}}' | gawk '{if(($4!="time:")){print $0}}' | gawk '{if(($3!="Elapsed")){print $0}}' | gawk '{if(($2!="Elapsed")){print $0}}' | gawk '{if(($3!="Welcome")){print $0}}' | gawk '{if(($7!="residual")){print $0}}' | gawk '{if(($3!="mode(nmw):") ){print $0}}' | gawk '{if( !(($3=="mode(mw):")&&($4<6)) ){print $0}}' | gawk '{if(($3!="Heap:")){print $0}}' | egrep -v ^[-+]{3} | egrep ^[\<\>]
MPI processes: 1
MKL_NUM_THREADS:2
OMP_NUM_THREADS:2
command: ../src/molds < ch4_pm3_davidsonCIS_singlet.in > temp.dat
command: diff ch4_pm3_davidsonCIS_singlet.dat temp.dat | gawk '{if(($2!="SCF")&&($3!="iter")){print $0}}' | gawk '{if(($4!="time:")){print $0}}' | gawk '{if(($3!="Elapsed")){print $0}}' | gawk '{if(($2!="Elapsed")){print $0}}' | gawk '{if(($3!="Welcome")){print $0}}' | gawk '{if(($7!="residual")){print $0}}' | gawk '{if(($3!="mode(nmw):") ){print $0}}' | gawk '{if( !(($3=="mode(mw):")&&($4<6)) ){print $0}}' | gawk '{if(($3!="Heap:")){print $0}}' | egrep -v ^[-+]{3} | egrep ^[\<\>]
MPI processes: 2
MKL_NUM_THREADS:4
OMP_NUM_THREADS:2
command: mpirun -np 2 ../src/molds ch4_pm3_davidsonCIS_singlet.in > temp.dat
command: diff ch4_pm3_davidsonCIS_singlet.dat temp.dat | gawk '{if(($2!="SCF")&&($3!="iter")){print $0}}' | gawk '{if(($4!="time:")){print $0}}' | gawk '{if(($3!="Elapsed")){print $0}}' | gawk '{if(($2!="Elapsed")){print $0}}' | gawk '{if(($3!="Welcome")){print $0}}' | gawk '{if(($7!/srv/reproducible-results/rbuild-debian-uuSFhTu1/tmp.CAvMCmXjBm: 42.5% -- replaced with /srv/reproducible-results/rbuild-debian-uuSFhTu1/tmp.CAvMCmXjBm.gz
INFO: Starting at 2016-09-02 08:48:33.928177
FATAL: null
java.lang.NullPointerException
at hudson.plugins.build_timeout.BuildTimeoutWrapper$EnvironmentImpl.tearDown(BuildTimeoutWrapper.java:199)
at hudson.model.Build$BuildExecution.doRun(Build.java:173)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:534)
at hudson.model.Run.execute(Run.java:1741)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:98)
at hudson.model.Executor.run(Executor.java:410)
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