[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_armhf_35 #7001
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Fri Sep 2 08:48:37 UTC 2016
See <https://jenkins.debian.net/job/reproducible_builder_armhf_35/7001/>
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[...truncated 14393 lines...]
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:IGC_A.pem
Adding debian:Izenpe.com.pem
Adding debian:Juur-SK.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:Microsec_e-Szigno_Root_CA.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:NetLock_Business_=Class_B=_Root.pem
Adding debian:NetLock_Express_=Class_C=_Root.pem
Adding debian:NetLock_Notary_=Class_A=_Root.pem
Adding debian:NetLock_Qualified_=Class_QA=_Root.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:PSCProcert.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:Root_CA_Generalitat_Valenciana.pem
Adding debian:RSA_Security_2048_v3.pem
Adding debian:Secure_Global_CA.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Security_Communication_EV_RootCA1.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Sonera_Class_1_Root_CA.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:StartCom_Certification_Authority_2.pem
Adding debian:StartCom_Certification_Authority.pem
Adding debian:StartCom_Certification_Authority_G2.pem
Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem
Adding debian:S-TRUST_Universal_Root_CA.pem
Adding debian:Swisscom_Root_CA_1.pem
Adding debian:Swisscom_Root_CA_2.pem
Adding debian:Swisscom_Root_EV_CA_2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Platinum_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:TC_TrustCenter_Class_3_CA_II.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:thawte_Primary_Root_CA.pem
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:thawte_Primary_Root_CA_-_G3.pem
Adding debian:Trustis_FPS_Root_CA.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem
Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H5.pem
Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H6.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:UTN_USERFirst_Email_Root_CA.pem
Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_2.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:Visa_eCommerce_Root.pem
Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem
Adding debian:WoSign_China.pem
Adding debian:WoSign.pem
Adding debian:XRamp_Global_CA_Root.pem
done.
done.
Elaborazione dei trigger per libgdk-pixbuf2.0-0:armhf (2.34.0-1)...
Elaborazione dei trigger per tex-common (6.05)...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Lettura elenco dei pacchetti...
Generazione albero delle dipendenze...
Lettura informazioni sullo stato...
Lettura delle informazioni sullo stato esteso...
Inizializzazione dello stato dei pacchetti...
Scrittura delle informazioni sullo stato esteso...
Costruzione del database delle etichette...
-> Finished parsing the build-deps
Lettura elenco dei pacchetti...
Generazione albero delle dipendenze...
Lettura informazioni sullo stato...
fakeroot is already the newest version (1.21-2).
0 aggiornati, 0 installati, 0 da rimuovere e 0 non aggiornati.
I: Copying source file
I: copying [beast2-mcmc_2.4.3+dfsg-1.dsc]
I: copying [./beast2-mcmc_2.4.3+dfsg.orig.tar.xz]
I: copying [./beast2-mcmc_2.4.3+dfsg-1.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': Errore generale
gpgv: Signature made mar 30 ago 2016 20:45:05 GMT-14
gpgv: using RSA key 578A0494D1C646D1
gpgv: Can't check signature: Nessuna chiave pubblica
dpkg-source: warning: failed to verify signature on ./beast2-mcmc_2.4.3+dfsg-1.dsc
dpkg-source: info: extracting beast2-mcmc in beast2-mcmc-2.4.3+dfsg
dpkg-source: info: unpacking beast2-mcmc_2.4.3+dfsg.orig.tar.xz
dpkg-source: info: unpacking beast2-mcmc_2.4.3+dfsg-1.debian.tar.xz
dpkg-source: info: applying fix_classpath_in_build_xml.patch
dpkg-source: info: applying remove_appbundler.patch
I: Building the package
W: no hooks of type A found -- ignoring
I: Running cd /build-2nd/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b --buildinfo-identifier=armhf -rfakeroot
dpkg-buildpackage: info: source package beast2-mcmc
dpkg-buildpackage: info: source version 2.4.3+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille at debian.org>
dpkg-source --before-build beast2-mcmc-2.4.3+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with javahelper
dh_testdir
dh_auto_clean
ant clean
Buildfile: /build-2nd/beast2-mcmc-2.4.3+dfsg/build.xml
clean:
BUILD SUCCESSFUL
Total time: 11 seconds
jh_clean
dh_clean
debian/rules build
dh build --with javahelper
dh_testdir
dh_update_autotools_config
dh_auto_configure
jh_linkjars
debian/rules override_dh_auto_build
make[1]: ingresso nella directory "/build-2nd/beast2-mcmc-2.4.3+dfsg"
# move tests requiring fest.swing out of the way
mv src/test/beast/app/beauti debian/fest_swing_tests
dh_auto_build
ant -Duser.name debian
Buildfile: /build-2nd/beast2-mcmc-2.4.3+dfsg/build.xml
clean:
init:
[echo] BUILD_BEAST_2: /build-2nd/beast2-mcmc-2.4.3+dfsg/build.xml
compile-all:
[echo] Building BEAST 2
[mkdir] Created dir: /build-2nd/beast2-mcmc-2.4.3+dfsg/build
[javac] Compiling 455 source files to /build-2nd/beast2-mcmc-2.4.3+dfsg/build
[javac] /build-2nd/beast2-mcmc-2.4.3+dfsg/src/beast/util/XMLParserUtils.java:25: warning: CoreDocumentImpl is internal proprietary API and may be removed in a future release
[javac] import com.sun.org.apache.xerces.internal.dom.CoreDocumentImpl;
[javac] ^
[javac] /build-2nd/beast2-mcmc-2.4.3+dfsg/src/beast/util/XMLParserUtils.java:120: warning: CoreDocumentImpl is internal proprietary API and may be removed in a future release
[javac] ((CoreDocumentImpl) doc).putIdentifier(id, (Element) node);
[javac] ^
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: Some input files use unchecked or unsafe operations.
[javac] Note: Recompile with -Xlint:unchecked for details.
[javac] 2 warnings
[delete] Deleting: /build-2nd/beast2-mcmc-2.4.3+dfsg/build/beast/app/beastapp/BeastLauncher.class
[delete] Deleting: /build-2nd/beast2-mcmc-2.4.3+dfsg/build/beast/app/beauti/BeautiLauncher.class
[delete] Deleting: /build-2nd/beast2-mcmc-2.4.3+dfsg/build/beast/app/tools/AppStoreLauncher.class
[delete] Deleting: /build-2nd/beast2-mcmc-2.4.3+dfsg/build/beast/app/tools/LogCombinerLauncher.class
[delete] Deleting: /build-2nd/beast2-mcmc-2.4.3+dfsg/build/beast/app/treeannotator/TreeAnnotatorLauncher.class
[delete] Deleting: /build-2nd/beast2-mcmc-2.4.3+dfsg/build/beast/app/util/Utils6.class
[delete] Deleting: /build-2nd/beast2-mcmc-2.4.3+dfsg/build/beast/app/BEASTVersion.class
[delete] Deleting: /build-2nd/beast2-mcmc-2.4.3+dfsg/build/beast/app/util/Version.class
[javac] Compiling 8 source files to /build-2nd/beast2-mcmc-2.4.3+dfsg/build
[javac] warning: [options] bootstrap class path not set in conjunction with -source 1.6
[javac] 1 warning
[copy] Copying 67 files to /build-2nd/beast2-mcmc-2.4.3+dfsg/build
[echo] Successfully compiled.
junit:
[mkdir] Created dir: /build-2nd/beast2-mcmc-2.4.3+dfsg/build/junitreport
[junit] Running test.beast.app.BeautiSubTemplateTest
[junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.003 sec
[junit] Running test.beast.app.BeautiTest
[junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 63.293 sec
[junit] Running test.beast.app.tools.LogCombinerTest
[junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 97.305 sec
[junit] Running test.beast.core.BEASTInterfaceTest
[junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.534 sec
[junit] Running test.beast.core.LoggerTest
[junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.525 sec
[junit] Running test.beast.core.StateNodeInitialiserTest
[junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 42.538 sec
[junit] Running test.beast.core.parameter.BooleanParameterListTest
[junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.745 sec
[junit] Running test.beast.core.parameter.IntegerParameterListTest
[junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.044 sec
[junit] Running test.beast.core.parameter.ParameterTest
[junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.461 sec
[junit] Running test.beast.core.parameter.RealParameterListTest
[junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.105 sec
[junit] Running test.beast.core.util.SumTest
[junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.105 sec
[junit] Running test.beast.evolution.alignment.FilteredAlignmentTest
[junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 83.691 sec
[junit] Running test.beast.evolution.alignment.UncertainAlignmentTest
[junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 34.077 sec
[junit] Running test.beast.evolution.alignment.UnorderedAlignmentsTest
[junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 100.716 sec
[junit] Running test.beast.evolution.datatype.IntegerDataTest
[junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.679 sec
[junit] Running test.beast.evolution.likelihood.TreeLikelihoodTest
[junit] Tests run: 32, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 231.818 sec
[junit] Running test.beast.evolution.operator.DeltaExchangeOperatorTest
[junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.275 sec
[junit] Running test.beast.evolution.operator.ExchangeOperatorTest
[junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 12'398.404 sec
[junit] Running test.beast.evolution.operator.IntRandomWalkOperatorTest
/srv/reproducible-results/rbuild-debian-5dVqxQ82/tmp.pHFqbWRBr2: 95.8% -- replaced with /srv/reproducible-results/rbuild-debian-5dVqxQ82/tmp.pHFqbWRBr2.gz
FATAL: null
java.lang.NullPointerException
at hudson.plugins.build_timeout.BuildTimeoutWrapper$EnvironmentImpl.tearDown(BuildTimeoutWrapper.java:199)
at hudson.model.Build$BuildExecution.doRun(Build.java:173)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:534)
at hudson.model.Run.execute(Run.java:1741)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:98)
at hudson.model.Executor.run(Executor.java:410)
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