[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_12 #48149
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Sat Sep 3 22:52:10 UTC 2016
See <https://jenkins.debian.net/job/reproducible_builder_amd64_12/48149/>
------------------------------------------
[...truncated 4552 lines...]
+Paramétrage de libxcb-shm0:amd64 (1.11.1-1.1) ...
+Paramétrage de libxt6:amd64 (1:1.1.5-1) ...
+Paramétrage de libxrender1:amd64 (1:0.9.9-2) ...
+Paramétrage de libkrb5-3:amd64 (1.14.3+dfsg-1) ...
+Paramétrage de libxft2:amd64 (2.3.2-1) ...
+Paramétrage de fontconfig (2.11.0-6.7) ...
Regenerating fonts cache... done.
-Setting up liblapack-dev (3.6.1-2) ...
-update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
-Setting up libxext6:amd64 (2:1.3.3-1) ...
-Setting up po-debconf (1.0.19) ...
-Setting up libxss1:amd64 (1:1.2.2-1) ...
-Setting up libgssapi-krb5-2:amd64 (1.14.3+dfsg-1) ...
-Setting up libpango-1.0-0:amd64 (1.40.2-1) ...
-Setting up libcairo2:amd64 (1.14.6-1+b1) ...
-Setting up libcurl3:amd64 (7.50.1-1) ...
-Setting up libtk8.6:amd64 (8.6.6-1) ...
-Setting up libpangoft2-1.0-0:amd64 (1.40.2-1) ...
-Setting up libpangocairo-1.0-0:amd64 (1.40.2-1) ...
-Setting up r-base-core (3.3.1-1+b1) ...
+Paramétrage de liblapack-dev (3.6.1-2) ...
+update-alternatives: utilisation de « /usr/lib/lapack/liblapack.so » pour fournir « /usr/lib/liblapack.so » (liblapack.so) en mode automatique
+Paramétrage de libxext6:amd64 (2:1.3.3-1) ...
+Paramétrage de po-debconf (1.0.19) ...
+Paramétrage de libxss1:amd64 (1:1.2.2-1) ...
+Paramétrage de libgssapi-krb5-2:amd64 (1.14.3+dfsg-1) ...
+Paramétrage de libpango-1.0-0:amd64 (1.40.2-1) ...
+Paramétrage de libcairo2:amd64 (1.14.6-1+b1) ...
+Paramétrage de libcurl3:amd64 (7.50.1-1) ...
+Paramétrage de libtk8.6:amd64 (8.6.6-1) ...
+Paramétrage de libpangoft2-1.0-0:amd64 (1.40.2-1) ...
+Paramétrage de libpangocairo-1.0-0:amd64 (1.40.2-1) ...
+Paramétrage de r-base-core (3.3.1-1+b1) ...
Creating config file /etc/R/Renviron with new version
-Setting up r-cran-littler (0.3.1-1) ...
-Setting up littler (0.3.1-1) ...
-Setting up r-base-dev (3.3.1-1) ...
-Setting up r-cran-nloptr (1.0.4-1) ...
-Setting up r-cran-pkgkitten (0.1.3-1) ...
-Setting up r-cran-rcpp (0.12.6-1) ...
-Setting up r-cran-mass (7.3-45-1) ...
-Setting up r-cran-lattice (0.20-33-1) ...
-Setting up r-cran-nlme (3.1.128-2) ...
-Setting up r-cran-minqa (1.2.4-1) ...
-Setting up r-cran-matrix (1.2-7.1-1) ...
-Setting up r-cran-rcppeigen (0.3.2.9.0-1) ...
-Setting up r-cran-lme4 (1.1-12-2) ...
-Setting up dh-strip-nondeterminism (0.023-2) ...
-Setting up dh-autoreconf (12) ...
-Setting up debhelper (9.20160814) ...
-Processing triggers for libc-bin (2.24-1) ...
-Processing triggers for ca-certificates (20160104) ...
+Paramétrage de r-cran-littler (0.3.1-1) ...
+Paramétrage de littler (0.3.1-1) ...
+Paramétrage de r-base-dev (3.3.1-1) ...
+Paramétrage de r-cran-nloptr (1.0.4-1) ...
+Paramétrage de r-cran-pkgkitten (0.1.3-1) ...
+Paramétrage de r-cran-rcpp (0.12.6-1) ...
+Paramétrage de r-cran-mass (7.3-45-1) ...
+Paramétrage de r-cran-lattice (0.20-33-1) ...
+Paramétrage de r-cran-nlme (3.1.128-2) ...
+Paramétrage de r-cran-minqa (1.2.4-1) ...
+Paramétrage de r-cran-matrix (1.2-7.1-1) ...
+Paramétrage de r-cran-rcppeigen (0.3.2.9.0-1) ...
+Paramétrage de r-cran-lme4 (1.1-12-2) ...
+Paramétrage de dh-strip-nondeterminism (0.023-2) ...
+Paramétrage de dh-autoreconf (12) ...
+Paramétrage de debhelper (9.20160814) ...
+Traitement des actions différées (« triggers ») pour libc-bin (2.24-1) ...
+Traitement des actions différées (« triggers ») pour ca-certificates (20160104) ...
Updating certificates in /etc/ssl/certs...
173 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-Reading extended state information...
-Initializing package states...
-Writing extended state information...
-Building tag database...
+Lecture des listes de paquets...
+Construction de l'arbre des dépendances...
+Lecture des informations d'état...
+Lecture de l'information d'état étendu...
+Initialisation de l'état des paquets...
+Écriture de l'information d'état étendu...
+Construction de la base de données des étiquettes...
-> Finished parsing the build-deps
-Reading package lists...
-Building dependency tree...
-Reading state information...
+Lecture des listes de paquets…
+Construction de l'arbre des dépendances…
+Lecture des informations d'état…
fakeroot is already the newest version (1.21-2).
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 mis à jour, 0 nouvellement installés, 0 à enlever et 0 non mis à jour.
I: Copying source file
I: copying [r-cran-mlmrev_1.0-6-2.dsc]
I: copying [./r-cran-mlmrev_1.0-6.orig.tar.gz]
I: copying [./r-cran-mlmrev_1.0-6-2.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
-gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
-gpgv: Signature made Wed Jun 22 18:51:28 2016 GMT+12
+gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': Erreur générale
+gpgv: Signature made jeu 23 jun 2016 20:51:28 GMT-14
gpgv: using RSA key 578A0494D1C646D1
-gpgv: Can't check signature: No public key
+gpgv: Can't check signature: Pas de clef publique
dpkg-source: warning: failed to verify signature on ./r-cran-mlmrev_1.0-6-2.dsc
dpkg-source: info: extracting r-cran-mlmrev in r-cran-mlmrev-1.0-6
dpkg-source: info: unpacking r-cran-mlmrev_1.0-6.orig.tar.gz
dpkg-source: info: unpacking r-cran-mlmrev_1.0-6-2.debian.tar.xz
I: Building the package
-I: Running cd /build-1st/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b --buildinfo-identifier=amd64 -rfakeroot
+W: no hooks of type A found -- ignoring
+I: Running cd /build-2nd/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b --buildinfo-identifier=amd64 -rfakeroot
dpkg-buildpackage: info: source package r-cran-mlmrev
dpkg-buildpackage: info: source version 1.0-6-2
dpkg-buildpackage: info: source distribution unstable
@@ -819,18 +832,18 @@
echo "R:Depends=r-base-core (>= 3.3.1-1), r-api-3" >> debian/r-cran-mlmrev.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build-1st/r-cran-mlmrev-1.0-6/debian/r-cran-mlmrev/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build-2nd/r-cran-mlmrev-1.0-6/debian/r-cran-mlmrev/usr/lib/R/site-library --clean \
. \
"--built-timestamp=\"Thu, 23 Jun 2016 08:49:21 +0200\"" \
; \
else \
- R CMD INSTALL -l /build-1st/r-cran-mlmrev-1.0-6/debian/r-cran-mlmrev/usr/lib/R/site-library \
+ R CMD INSTALL -l /build-2nd/r-cran-mlmrev-1.0-6/debian/r-cran-mlmrev/usr/lib/R/site-library \
--clean . \
"--built-timestamp=\"Thu, 23 Jun 2016 08:49:21 +0200\"" \
; \
fi
-* installing *source* package 'mlmRev' ...
-** package 'mlmRev' successfully unpacked and MD5 sums checked
+* installing *source* package ‘mlmRev’ ...
+** package ‘mlmRev’ correctement décompressé et sommes MD5 vérifiées
** data
*** moving datasets to lazyload DB
** inst
@@ -840,14 +853,14 @@
** installing vignettes
** testing if installed package can be loaded
* DONE (mlmRev)
-rm -vf /build-1st/r-cran-mlmrev-1.0-6/debian/r-cran-mlmrev/usr/lib/R/site-library/R.css \
- /build-1st/r-cran-mlmrev-1.0-6/debian/r-cran-mlmrev/usr/lib/R/site-library/mlmRev/COPYING \
- /build-1st/r-cran-mlmrev-1.0-6/debian/r-cran-mlmrev/usr/lib/R/site-library/mlmRev/LICENSE.txt \
- /build-1st/r-cran-mlmrev-1.0-6/debian/r-cran-mlmrev/usr/lib/R/site-library/mlmRev/LICENSE
+rm -vf /build-2nd/r-cran-mlmrev-1.0-6/debian/r-cran-mlmrev/usr/lib/R/site-library/R.css \
+ /build-2nd/r-cran-mlmrev-1.0-6/debian/r-cran-mlmrev/usr/lib/R/site-library/mlmRev/COPYING \
+ /build-2nd/r-cran-mlmrev-1.0-6/debian/r-cran-mlmrev/usr/lib/R/site-library/mlmRev/LICENSE.txt \
+ /build-2nd/r-cran-mlmrev-1.0-6/debian/r-cran-mlmrev/usr/lib/R/site-library/mlmRev/LICENSE
if test -f debian/overrides; then \
- install -d /build-1st/r-cran-mlmrev-1.0-6/debian/r-cran-mlmrev/usr/share/lintian/overrides ; \
+ install -d /build-2nd/r-cran-mlmrev-1.0-6/debian/r-cran-mlmrev/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build-1st/r-cran-mlmrev-1.0-6/debian/r-cran-mlmrev/usr/share/lintian/overrides/r-cran-mlmrev; \
+ /build-2nd/r-cran-mlmrev-1.0-6/debian/r-cran-mlmrev/usr/share/lintian/overrides/r-cran-mlmrev; \
fi
Adding cdbs dependencies to debian/r-cran-mlmrev.substvars
dh_installdirs -pr-cran-mlmrev \
@@ -895,12 +908,15 @@
dpkg-source --after-build r-cran-mlmrev-1.0-6
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/26905/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/26905/tmp/hooks/B01_cleanup finished
+W: no hooks of type I found -- ignoring
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/57383 and its subdirectories
-I: Current time: Fri Oct 6 17:06:53 GMT+12 2017
-I: pbuilder-time-stamp: 1507352813
+I: removing directory /srv/workspace/pbuilder/26905 and its subdirectories
+I: Current time: dimanche 4 septembre 2016, 12:45:46 (UTC+1400)
+I: pbuilder-time-stamp: 1472942746
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/r-cran-mlmrev_1.0-6-2.diff: 86.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/r-cran-mlmrev_1.0-6-2.diff.gz
b2/build.log: 82.6%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 81.5%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/r-cran-mlmrev_1.0-6-2.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-cHgTSHmY/tmp.W7EXSGjJAm
+ mv /srv/reproducible-results/rbuild-debian-cHgTSHmY/tmp.W7EXSGjJAm /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-mlmrev_1.0-6-2.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-mlmrev_1.0-6-2.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ call_diffoscope_on_buildinfo_files
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-cHgTSHmY
+ local TMPLOG=/srv/reproducible-results/rbuild-debian-cHgTSHmY/tmp.VRsMGAJKD3
+ local TIMEOUT=120m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-cHgTSHmY -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/rbuild-debian-cHgTSHmY/dbd-tmp-bEMEZ5P
++ schroot --directory /srv/reproducible-results/rbuild-debian-cHgTSHmY -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 59'
++ grep '^E: 15binfmt: update-binfmts: unable to open'
++ echo diffoscope 59
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ log_info 'diffoscope 59 will be used to compare the two builds:'
+ _log I: 'diffoscope 59 will be used to compare the two builds:'
+ local prefix=I:
+ shift 1
+ tee -a /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-mlmrev_1.0-6-2.rbuild.log
++ date -u
+ echo -e 'Sat Sep 3 22:45:57 UTC 2016 I: diffoscope 59 will be used to compare the two builds:'
Sat Sep 3 22:45:57 UTC 2016 I: diffoscope 59 will be used to compare the two builds:
+ set +e
+ set -x
+ timeout 120m nice schroot --directory /srv/reproducible-results/rbuild-debian-cHgTSHmY -c source:jenkins-reproducible-unstable-diffoscope -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian-cHgTSHmY/dbd-tmp-bEMEZ5P ; diffoscope --html /srv/reproducible-results/rbuild-debian-cHgTSHmY/r-cran-mlmrev_1.0-6-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian-cHgTSHmY/r-cran-mlmrev_1.0-6-2.diffoscope.txt /srv/reproducible-results/rbuild-debian-cHgTSHmY/b1/r-cran-mlmrev_1.0-6-2_amd64.buildinfo /srv/reproducible-results/rbuild-debian-cHgTSHmY/b2/r-cran-mlmrev_1.0-6-2_amd64.buildinfo'
+ RESULT=1
++ grep '^E: 15binfmt: update-binfmts: unable to open' /srv/reproducible-results/rbuild-debian-cHgTSHmY/tmp.VRsMGAJKD3
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ false
+ set +x
Sat Sep 3 22:46:11 UTC 2016 E: r-cran-mlmrev failed to build reproducibly in unstable on amd64.
Sat Sep 3 22:46:11 UTC 2016 I: https://tests.reproducible-builds.org/debian/unstable/amd64/r-cran-mlmrev : reproducible ➤ unreproducible
INFO: Starting at 2016-09-03 22:46:12.631749
INFO: Finished at 2016-09-03 22:46:12.717545, took: 0:00:00.085816
Sat Sep 3 22:46:12 UTC 2016 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/r-cran-mlmrev.html
Sat Sep 3 22:46:12 UTC 2016 - total duration: 0h 3m 56s.
/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-mlmrev_1.0-6-2.rbuild.log: 79.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-mlmrev_1.0-6-2.rbuild.log.gz
INFO: Starting at 2016-09-03 22:46:13.162217
INFO: Finished at 2016-09-03 22:46:13.254538, took: 0:00:00.092346
Sat 3 Sep 22:46:13 UTC 2016 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-CdSUcf5I, which will now be removed.
FATAL: GC overhead limit exceeded
java.lang.OutOfMemoryError: GC overhead limit exceeded
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