[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_armhf_6 #13240
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Thu Sep 8 15:12:36 UTC 2016
See <https://jenkins.debian.net/job/reproducible_builder_armhf_6/13240/>
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[...truncated 23079 lines...]
/build-1st/python-escript-4.2.0.1/debian/tmp2/sphinx_int/esys.weipa.rst:17: WARNING: don't know which module to import for autodocumenting u'visitPublishData' (try placing a "module" or "currentmodule" directive in the document, or giving an explicit module name)
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 1%] esys
writing output... [ 2%] esys.downunder
writing output... [ 3%] esys.downunder.dcresistivityforwardmodeling
writing output... [ 5%] esys.downunder.domainbuilder
writing output... [ 6%] esys.downunder.forwardmodels
writing output... [ 7%] esys.downunder.forwardmodels.acoustic
writing output... [ 9%] esys.downunder.forwardmodels.base
writing output... [ 10%] esys.downunder.forwardmodels.dcresistivity
writing output... [ 11%] esys.downunder.forwardmodels.gravity
writing output... [ 13%] esys.downunder.forwardmodels.magnetic
writing output... [ 14%] esys.downunder.forwardmodels.magnetotelluric2d
writing output... [ 15%] esys.downunder.forwardmodels.pressure
writing output... [ 17%] esys.downunder.forwardmodels.subsidence
writing output... [ 18%] esys.downunder.magtel1d
writing output... [ 19%] esys.downunder.magtel2d
writing output... [ 21%] esys.downunder.seismic
writing output... [ 22%] esys.downunder.splitinversioncostfunctions
writing output... [ 23%] esys.downunder.splitminimizers
writing output... [ 25%] esys.downunder.splitregularizations
writing output... [ 26%] esys.dudley
writing output... [ 27%] esys.escript
writing output... [ 28%] esys.escript.datamanager
writing output... [ 30%] esys.escript.linearPDEs
writing output... [ 31%] esys.escript.modelframe
writing output... [ 32%] esys.escript.models
writing output... [ 34%] esys.escript.pdetools
writing output... [ 35%] esys.escript.splitworld
writing output... [ 36%] esys.escript.symbolic
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writing output... [ 39%] esys.escript.util
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writing output... [ 43%] esys.escriptcore.datamanager
writing output... [ 44%] esys.escriptcore.domainCouplers
writing output... [ 46%] esys.escriptcore.escriptcpp
writing output... [ 47%] esys.escriptcore.faultsystems
writing output... [ 48%] esys.escriptcore.flows
writing output... [ 50%] esys.escriptcore.gmshrunner
writing output... [ 51%] esys.escriptcore.heat
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writing output... [ 57%] esys.escriptcore.mountains
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writing output... [ 61%] esys.escriptcore.rheologies
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writing output... [ 72%] esys.escriptcore.util
writing output... [ 73%] esys.finley
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writing output... [ 88%] esys.pycad
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writing output... [ 97%] esys.speckley
writing output... [ 98%] esys.weipa
writing output... [100%] index
/build-1st/python-escript-4.2.0.1/debian/stage2/esys/downunder/costfunctions.py:docstring of esys.downunder.CostFunction:None: WARNING: more than one target found for cross-reference u'provides_inverse_Hessian_approximation': esys.downunder.CostFunction.provides_inverse_Hessian_approximation, esys.downunder.Regularization.provides_inverse_Hessian_approximation, esys.downunder.SplitInversionCostFunction.provides_inverse_Hessian_approximation, esys.downunder.MeteredCostFunction.provides_inverse_Hessian_approximation, esys.downunder.SplitRegularization.provides_inverse_Hessian_approximation, esys.downunder.InversionCostFunction.provides_inverse_Hessian_approximation
/build-1st/python-escript-4.2.0.1/debian/stage2/esys/downunder/inversioncostfunctions.py:docstring of esys.downunder.InversionCostFunction:None: WARNING: more than one target found for cross-reference u'provides_inverse_Hessian_approximation': esys.downunder.CostFunction.provides_inverse_Hessian_approximation, esys.downunder.Regularization.provides_inverse_Hessian_approximation, esys.downunder.SplitInversionCostFunction.provides_inverse_Hessian_approximation, esys.downunder.MeteredCostFunction.provides_inverse_Hessian_approximation, esys.downunder.SplitRegularization.provides_inverse_Hessian_approximation, esys.downunder.InversionCostFunction.provides_inverse_Hessian_approximation
/build-1st/python-escript-4.2.0.1/debian/stage2/esys/downunder/splitinversioncostfunctions.py:docstring of esys.downunder.SplitInversionCostFunction:None: WARNING: more than one target found for cross-reference u'provides_inverse_Hessian_approximation': esys.downunder.CostFunction.provides_inverse_Hessian_approximation, esys.downunder.Regularization.provides_inverse_Hessian_approximation, esys.downunder.SplitInversionCostFunction.provides_inverse_Hessian_approximation, esys.downunder.MeteredCostFunction.provides_inverse_Hessian_approximation, esys.downunder.SplitRegularization.provides_inverse_Hessian_approximation, esys.downunder.InversionCostFunction.provides_inverse_Hessian_approximation
generating indices... genindex py-modindex
writing additional pages... search
copying static files... WARNING: html_static_path entry u'/build-1st/python-escript-4.2.0.1/doc/sphinx_api/_static' does not exist
done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 1384 warnings.
scons: done building targets.
*** Config Summary (see config.log and <prefix>/lib/buildvars for details) ***
Escript/Finley revision 6110
Install prefix: /build-1st/python-escript-4.2.0.1/debian/stage2
Python: /usr
boost: /usr (Version 1.61.0)
numpy: YES (with headers)
MPI: NO
ParMETIS: NO
LAPACK: NO
CUDA: NO
openmp: YES
netcdf: YES
debug: NO
boomeramg: NO
cppunit: NO
gdal: NO
mkl: NO
papi: NO
pyproj: NO
scipy: NO
silo: NO
sympy: NO
umfpack: NO
visit: NO
gmsh: NO
gzip: NO
Treating warnings as errors
WARNING: Cannot import scipy. NetCDF sources will not be available for inversions.
WARNING: Cannot import pyproj. Inversions may not work.
WARNING: Cannot import gdal. Inversions will not honour WKT coordinate system information.
WARNING: Cannot import sympy. Symbolic toolbox and nonlinear PDEs will not be available.
WARNING: matplotlib not found, will skip some unit tests
WARNING: gmsh not available. Skipping tests usersguide/trapezoid.py usersguide/quad.py usersguide/brick.py usersguide/refine.py cookbook/example04a.py cookbook/example04b.py cookbook/example05a.py cookbook/example05b.py cookbook/example05c.py cookbook/example06.py cookbook/example08c.py cookbook/example09m.py cookbook/example09a.py cookbook/example10m.py inversion/dc_forward.py!
SUCCESS: build complete
find /build-1st/python-escript-4.2.0.1/debian/stage2 -name '*.pyc' -print0 | xargs -0 rm -f
# Build steps for py2 with MPI
mkdir -p /build-1st/python-escript-4.2.0.1/debian/stage2M
if [ ! -f svn_version ];then echo "No svn_version file found"; exit 3;fi
scons -j4 SVN_VERSION=`cat svn_version` build_dir=/build-1st/python-escript-4.2.0.1/debian/tmp2M cc_optim='-O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\"' verbose=on prefix=/build-1st/python-escript-4.2.0.1/debian/stage2M options_file=scons/templates/sid_mpi_options.py
scons: Reading SConscript files ...
Building with the following additional flags from debian: [['cpp_flags', '-Wdate-time -D_FORTIFY_SOURCE=2'], ['cxx_extra', '-g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security'], ['ld_extra', '-Wl,-z,relro']]
Using options in scons/templates/sid_mpi_options.py.
Checking whether the C++ compiler works... yes
Checking for C++ function gethostname()... yes
Checking for C++ header file byteswap.h... yes
Checking for C++ function SCbswap32()... yes
Checking for C++ header file sys/endian.h... no
Checking for C++ header file libkern/OSByteOrder.h... no
Checking for C++ header file Python.h... yes
Checking for C++ function Py_Exit()... yes
Checking for C++ library boost_python-py27... yes
Checking for C++ header file numpy/ndarrayobject.h... yes
Checking for C++ library netcdf_c++... yes
Checking for C++ library mpi_cxx... yes
Checking for C++ library boost_iostreams... no
Chmod("/build-1st/python-escript-4.2.0.1/debian/stage2M/bin/run-escript", 0755)
Chmod("utest.sh", 0755)
Generated utest.sh.
Chmod("itest.sh", 0755)
Generated itest.sh.
scons: done reading SConscript files.
scons: Building targets ...
Touch("debian/stage2M/esys/__init__.py")
Install file: "esysUtils/src/EsysAssert.h" as "debian/stage2M/include/esysUtils/EsysAssert.h"
Install file: "esysUtils/src/EsysAssertException.h" as "debian/stage2M/include/esysUtils/EsysAssertException.h"
Install file: "esysUtils/src/EsysException.h" as "debian/stage2M/include/esysUtils/EsysException.h"
Install file: "esysUtils/src/EsysRandom.h" as "debian/stage2M/include/esysUtils/EsysRandom.h"
Install file: "esysUtils/src/Esys_MPI.h" as "debian/stage2M/include/esysUtils/Esys_MPI.h"
Install file: "esysUtils/src/IndexList.h" as "debian/stage2M/include/esysUtils/IndexList.h"
Install file: "esysUtils/src/error.h" as "debian/stage2M/include/esysUtils/error.h"
Install file: "esysUtils/src/esysExceptionTranslator.h" as "debian/stage2M/include/esysUtils/esysExceptionTranslator.h"
Install file: "esysUtils/src/esysFileWriter.h" as "debian/stage2M/include/esysUtils/esysFileWriter.h"
Install file: "esysUtils/src/blocktimer.h" as "debian/stage2M/include/esysUtils/blocktimer.h"
Install file: "esysUtils/src/mem.h" as "debian/stage2M/include/esysUtils/mem.h"
Install file: "esysUtils/src/index.h" as "debian/stage2M/include/esysUtils/index.h"
Install file: "esysUtils/src/maths.h" as "debian/stage2M/include/esysUtils/maths.h"
Install file: "esysUtils/src/pyerr.h" as "debian/stage2M/include/esysUtils/pyerr.h"
Install file: "esysUtils/src/system_dep.h" as "debian/stage2M/include/esysUtils/system_dep.h"
Install file: "esysUtils/src/first.h" as "debian/stage2M/include/esysUtils/first.h"
Install file: "esysUtils/src/types.h" as "debian/stage2M/include/esysUtils/types.h"
g++ -o debian/tmp2M/posix/esysUtils/EsysAssertException.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include esysUtils/src/EsysAssertException.cpp
g++ -o debian/tmp2M/posix/esysUtils/EsysException.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include esysUtils/src/EsysException.cpp
g++ -o debian/tmp2M/posix/esysUtils/EsysRandom.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include esysUtils/src/EsysRandom.cpp
g++ -o debian/tmp2M/posix/esysUtils/Esys_MPI.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include esysUtils/src/Esys_MPI.cpp
g++ -o debian/tmp2M/posix/esysUtils/error.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include esysUtils/src/error.cpp
g++ -o debian/tmp2M/posix/esysUtils/esysExceptionTranslator.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include esysUtils/src/esysExceptionTranslator.cpp
g++ -o debian/tmp2M/posix/esysUtils/blocktimer.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include esysUtils/src/blocktimer.cpp
g++ -o debian/tmp2M/posix/esysUtils/pyerr.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include esysUtils/src/pyerr.cpp
Install file: "paso/src/BlockOps.h" as "debian/stage2M/include/paso/BlockOps.h"
Install file: "paso/src/BOOMERAMG.h" as "debian/stage2M/include/paso/BOOMERAMG.h"
Install file: "paso/src/Coupler.h" as "debian/stage2M/include/paso/Coupler.h"
Install file: "paso/src/Distribution.h" as "debian/stage2M/include/paso/Distribution.h"
Install file: "paso/src/FCT_Solver.h" as "debian/stage2M/include/paso/FCT_Solver.h"
Install file: "paso/src/FluxLimiter.h" as "debian/stage2M/include/paso/FluxLimiter.h"
Install file: "paso/src/Functions.h" as "debian/stage2M/include/paso/Functions.h"
Install file: "paso/src/MergedSolver.h" as "debian/stage2M/include/paso/MergedSolver.h"
Install file: "paso/src/MKL.h" as "debian/stage2M/include/paso/MKL.h"
Install file: "paso/src/mmio.h" as "debian/stage2M/include/paso/mmio.h"
Install file: "paso/src/Options.h" as "debian/stage2M/include/paso/Options.h"
Install file: "paso/src/Paso.h" as "debian/stage2M/include/paso/Paso.h"
Install file: "paso/src/PasoUtil.h" as "debian/stage2M/include/paso/PasoUtil.h"
Install file: "paso/src/Pattern.h" as "debian/stage2M/include/paso/Pattern.h"
Install file: "paso/src/performance.h" as "debian/stage2M/include/paso/performance.h"
Install file: "paso/src/Preconditioner.h" as "debian/stage2M/include/paso/Preconditioner.h"
Install file: "paso/src/ReactiveSolver.h" as "debian/stage2M/include/paso/ReactiveSolver.h"
Install file: "paso/src/SharedComponents.h" as "debian/stage2M/include/paso/SharedComponents.h"
Install file: "paso/src/Solver.h" as "debian/stage2M/include/paso/Solver.h"
Install file: "paso/src/SparseMatrix.h" as "debian/stage2M/include/paso/SparseMatrix.h"
Install file: "paso/src/SystemMatrix.h" as "debian/stage2M/include/paso/SystemMatrix.h"
Install file: "paso/src/SystemMatrixPattern.h" as "debian/stage2M/include/paso/SystemMatrixPattern.h"
Install file: "paso/src/Transport.h" as "debian/stage2M/include/paso/Transport.h"
Install file: "paso/src/UMFPACK.h" as "debian/stage2M/include/paso/UMFPACK.h"
g++ -o debian/tmp2M/posix/paso/AMG.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/AMG.cpp
g++ -o debian/tmp2M/posix/paso/AMG_Interpolation.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/AMG_Interpolation.cpp
g++ -o debian/tmp2M/posix/paso/AMG_Prolongation.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/AMG_Prolongation.cpp
g++ -o debian/tmp2M/posix/paso/AMG_Restriction.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/AMG_Restriction.cpp
g++ -o debian/tmp2M/posix/esysUtils/libesysUtils.so -Wl,-z,relro -fopenmp -shared debian/tmp2M/posix/esysUtils/EsysAssertException.os debian/tmp2M/posix/esysUtils/EsysException.os debian/tmp2M/posix/esysUtils/EsysRandom.os debian/tmp2M/posix/esysUtils/Esys_MPI.os debian/tmp2M/posix/esysUtils/error.os debian/tmp2M/posix/esysUtils/esysExceptionTranslator.os debian/tmp2M/posix/esysUtils/blocktimer.os debian/tmp2M/posix/esysUtils/pyerr.os -Ldebian/stage2M/lib -L/usr/lib -L/usr/lib/openmpi/lib -lpython2.7 -lboost_python-py27 -lnetcdf_c++ -lnetcdf -lmpi_cxx -lmpi -lopen-rte -lopen-pal
Install file: "debian/tmp2M/posix/esysUtils/libesysUtils.so" as "debian/stage2M/lib/libesysUtils.so"
g++ -o debian/tmp2M/posix/paso/AMG_Root.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/AMG_Root.cpp
g++ -o debian/tmp2M/posix/paso/BiCGStab.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/BiCGStab.cpp
g++ -o debian/tmp2M/posix/paso/Coupler.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/Coupler.cpp
g++ -o debian/tmp2M/posix/paso/Distribution.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/Distribution.cpp
g++ -o debian/tmp2M/posix/paso/FCT_Solver.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/FCT_Solver.cpp
g++ -o debian/tmp2M/posix/paso/FluxLimiter.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/FluxLimiter.cpp
g++ -o debian/tmp2M/posix/paso/Functions.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/Functions.cpp
g++ -o debian/tmp2M/posix/paso/GMRES.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/GMRES.cpp
g++ -o debian/tmp2M/posix/paso/GMRES2.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/GMRES2.cpp
g++ -o debian/tmp2M/posix/paso/LocalAMG.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/LocalAMG.cpp
g++ -o debian/tmp2M/posix/paso/LocalAMG_Prolongation.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/LocalAMG_Prolongation.cpp
g++ -o debian/tmp2M/posix/paso/MergedSolver.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/MergedSolver.cpp
g++ -o debian/tmp2M/posix/paso/MKL.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/MKL.cpp
g++ -o debian/tmp2M/posix/paso/NewtonGMRES.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/NewtonGMRES.cpp
g++ -o debian/tmp2M/posix/paso/Options.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/Options.cpp
g++ -o debian/tmp2M/posix/paso/PCG.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/PCG.cpp
g++ -o debian/tmp2M/posix/paso/PasoUtil.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/PasoUtil.cpp
g++ -o debian/tmp2M/posix/paso/Pattern.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/Pattern.cpp
g++ -o debian/tmp2M/posix/paso/Pattern_mis.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/Pattern_mis.cpp
g++ -o debian/tmp2M/posix/paso/Pattern_reduceBandwidth.os -c -g -O2 -fdebug-prefix-map=/build-1st/python-escript-4.2.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -O3 -DOVERLORDPATH=\"/usr/lib/python-escript-mpi/\" -std=c++03 -isystem /usr/include/python2.7 -isystem /usr/include/boost -Werror -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DSVN_VERSION=6110 -DHAVE_GETHOSTNAME -DHAVE_BYTESWAP_H -DHAVE_NUMPY_H -DUSE_NETCDF -DESYS_MPI -DMPI_NO_CPPBIND -DMPICH_IGNORE_CXX_SEEK -DMPI_INCLUDED -Idebian/stage2M/include -I/usr/include -I/usr/lib/openmpi/include paso/src/Pattern_reduceBandwidth.cpp
/srv/reproducible-results/rbuild-debian-HYEMReUI/tmp.QeE5gvLTc1: 48.6% -- replaced with /srv/reproducible-results/rbuild-debian-HYEMReUI/tmp.QeE5gvLTc1.gz
FATAL: null
java.lang.NullPointerException
at hudson.plugins.build_timeout.BuildTimeoutWrapper$EnvironmentImpl.tearDown(BuildTimeoutWrapper.java:199)
at hudson.model.Build$BuildExecution.doRun(Build.java:173)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:534)
at hudson.model.Run.execute(Run.java:1741)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:98)
at hudson.model.Executor.run(Executor.java:410)
INFO: Starting at 2016-09-08 15:12:33.372338
INFO: Finished at 2016-09-08 15:12:33.582001, took: 0:00:00.209680
INFO: Starting at 2016-09-08 15:12:34.404498
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