[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_i386_3 #15950
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Thu Sep 22 13:39:27 UTC 2016
https://jenkins.debian.net/job/reproducible_builder_i386_3/15950/------------------------------------------
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transdecoder is finished. See output files Trinity.fasta.transdecoder.*
-make[2]: Leaving directory '/build-1st/transdecoder-3.0.0+dfsg'
+make[2]: Verzeichnis „/build-2nd/transdecoder-3.0.0+dfsg“ wird verlassen
cd ./sample_data && for script in ./*/cleanme.pl; do $($script); done
-removing file: blastp.outfmt6
-removing file: pfam.domtblout
@@ -938,23 +949,23 @@
-removing file: Trinity.fasta.transdecoder.gff3
-removing file: Trinity.fasta.transdecoder.pep
-removing file: Trinity.fasta.transdecoder_dir
-make[1]: Leaving directory '/build-1st/transdecoder-3.0.0+dfsg'
+make[1]: Verzeichnis „/build-2nd/transdecoder-3.0.0+dfsg“ wird verlassen
fakeroot debian/rules binary
dh binary --parallel
dh_testroot -O--parallel
dh_prep -O--parallel
dh_auto_install -O--parallel
debian/rules override_dh_install
-make[1]: Entering directory '/build-1st/transdecoder-3.0.0+dfsg'
+make[1]: Verzeichnis „/build-2nd/transdecoder-3.0.0+dfsg“ wird betreten
dh_install
find debian/transdecoder -name '*.p?' | xargs sed -i \
's=^#!/usr/local/bin/perl=#!/usr/bin/perl='
find debian/*/usr/lib/transdecoder -type d -empty -delete
-make[1]: Leaving directory '/build-1st/transdecoder-3.0.0+dfsg'
+make[1]: Verzeichnis „/build-2nd/transdecoder-3.0.0+dfsg“ wird verlassen
dh_installdocs -O--parallel
dh_installchangelogs -O--parallel
debian/rules override_dh_installman
-make[1]: Entering directory '/build-1st/transdecoder-3.0.0+dfsg'
+make[1]: Verzeichnis „/build-2nd/transdecoder-3.0.0+dfsg“ wird betreten
pod2man --section=1 --center="Transcriptome Protein Prediction" \
--release="$VERSION" TransDecoder.LongOrfs > \
debian/TransDecoder.LongOrfs.1
@@ -962,25 +973,25 @@
--release="$VERSION" TransDecoder.Predict > \
debian/TransDecoder.Predict.1
dh_installman
-make[1]: Leaving directory '/build-1st/transdecoder-3.0.0+dfsg'
+make[1]: Verzeichnis „/build-2nd/transdecoder-3.0.0+dfsg“ wird verlassen
dh_lintian -O--parallel
dh_perl -O--parallel
dh_link -O--parallel
dh_strip_nondeterminism -O--parallel
dh_compress -O--parallel
debian/rules override_dh_fixperms
-make[1]: Entering directory '/build-1st/transdecoder-3.0.0+dfsg'
+make[1]: Verzeichnis „/build-2nd/transdecoder-3.0.0+dfsg“ wird betreten
dh_fixperms
chmod -x debian/transdecoder/usr/lib/transdecoder/PerlLib/Fasta_retriever.pm
-make[1]: Leaving directory '/build-1st/transdecoder-3.0.0+dfsg'
+make[1]: Verzeichnis „/build-2nd/transdecoder-3.0.0+dfsg“ wird verlassen
dh_installdeb -O--parallel
dh_gencontrol -O--parallel
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -O--parallel
dh_builddeb -O--parallel
-dpkg-deb: building package 'transdecoder' in '../transdecoder_3.0.0+dfsg-2_all.deb'.
-dpkg-deb: building package 'transdecoder-doc' in '../transdecoder-doc_3.0.0+dfsg-2_all.deb'.
+dpkg-deb: Paket »transdecoder« wird in »../transdecoder_3.0.0+dfsg-2_all.deb« gebaut.
+dpkg-deb: Paket »transdecoder-doc« wird in »../transdecoder-doc_3.0.0+dfsg-2_all.deb« gebaut.
dpkg-genbuildinfo --build=any,all --buildinfo-id=i386
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=any,all >../transdecoder_3.0.0+dfsg-2_i386.changes
@@ -988,12 +999,14 @@
dpkg-source --after-build transdecoder-3.0.0+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/29071/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/29071/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/11120 and its subdirectories
-I: Current time: Thu Sep 22 01:23:45 GMT+12 2016
-I: pbuilder-time-stamp: 1474550625
+I: removing directory /srv/workspace/pbuilder/29071 and its subdirectories
+I: Current time: Don Okt 26 09:49:12 GMT-14 2017
+I: pbuilder-time-stamp: 1508960952
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/transdecoder_3.0.0+dfsg-2.diff: 86.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/transdecoder_3.0.0+dfsg-2.diff.gz
b2/build.log: 87.4%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 87.4%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/transdecoder_3.0.0+dfsg-2.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-9tHuwTvl/tmp.NGJM9VgXR6
+ mv /srv/reproducible-results/rbuild-debian-9tHuwTvl/tmp.NGJM9VgXR6 /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/transdecoder_3.0.0+dfsg-2.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/transdecoder_3.0.0+dfsg-2.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ call_diffoscope_on_buildinfo_files
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-9tHuwTvl
+ local TMPLOG=/srv/reproducible-results/rbuild-debian-9tHuwTvl/tmp.Vq8TPjmsrY
+ local TIMEOUT=120m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-9tHuwTvl -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/rbuild-debian-9tHuwTvl/dbd-tmp-sPErlHp
++ schroot --directory /srv/reproducible-results/rbuild-debian-9tHuwTvl -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 60'
++ echo diffoscope 60
++ grep '^E: 15binfmt: update-binfmts: unable to open'
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ log_info 'diffoscope 60 will be used to compare the two builds:'
+ _log I: 'diffoscope 60 will be used to compare the two builds:'
+ local prefix=I:
+ shift 1
+ tee -a /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/transdecoder_3.0.0+dfsg-2.rbuild.log
++ date -u
+ echo -e 'Thu Sep 22 13:26:20 UTC 2016 I: diffoscope 60 will be used to compare the two builds:'
Thu Sep 22 13:26:20 UTC 2016 I: diffoscope 60 will be used to compare the two builds:
+ set +e
+ set -x
+ timeout 120m nice schroot --directory /srv/reproducible-results/rbuild-debian-9tHuwTvl -c source:jenkins-reproducible-unstable-diffoscope -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian-9tHuwTvl/dbd-tmp-sPErlHp ; diffoscope --html /srv/reproducible-results/rbuild-debian-9tHuwTvl/transdecoder_3.0.0+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian-9tHuwTvl/transdecoder_3.0.0+dfsg-2.diffoscope.txt /srv/reproducible-results/rbuild-debian-9tHuwTvl/b1/transdecoder_3.0.0+dfsg-2_i386.buildinfo /srv/reproducible-results/rbuild-debian-9tHuwTvl/b2/transdecoder_3.0.0+dfsg-2_i386.buildinfo'
+ RESULT=0
++ grep '^E: 15binfmt: update-binfmts: unable to open' /srv/reproducible-results/rbuild-debian-9tHuwTvl/tmp.Vq8TPjmsrY
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ false
+ set +x
_ _ _
| |_ _ __ __ _ _ __ ___ __| | ___ ___ ___ __| | ___ _ __
| __| '__/ _` | '_ \/ __|/ _` |/ _ \/ __/ _ \ / _` |/ _ \ '__|
| |_| | | (_| | | | \__ \ (_| | __/ (_| (_) | (_| | __/ |
\__|_| \__,_|_| |_|___/\__,_|\___|\___\___/ \__,_|\___|_|
Thu Sep 22 13:26:21 UTC 2016 I: diffoscope 60 found no differences in the changes files, and a .buildinfo file also exists.
Thu Sep 22 13:26:21 UTC 2016 I: transdecoder from unstable built successfully and reproducibly on i386.
INFO: Starting at 2016-09-22 13:26:22.071744
INFO: Finished at 2016-09-22 13:26:22.177513, took: 0:00:00.105778
Thu Sep 22 13:26:22 UTC 2016 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/i386/transdecoder.html
Thu Sep 22 13:26:22 UTC 2016 - total duration: 0h 6m 21s.
/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/transdecoder_3.0.0+dfsg-2.rbuild.log: 87.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/transdecoder_3.0.0+dfsg-2.rbuild.log.gz
INFO: Starting at 2016-09-22 13:26:22.584192
INFO: Finished at 2016-09-22 13:26:22.685218, took: 0:00:00.101037
Thu 22 Sep 13:26:22 UTC 2016 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-gKpfGKiU, which will now be removed.
FATAL: GC overhead limit exceeded
java.lang.OutOfMemoryError: GC overhead limit exceeded
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