[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_armhf_39 #6463

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cd /build-1st/gromacs-2016/build/basic/src/testutils/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/testutils/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -isystem /build-1st/gromacs-2016/src/testutils/../external/tinyxml2 -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build-1st/gromacs-2016/src/testutils/tests/refdata_tests.cpp
cd /build-1st/gromacs-2016/build/basic/src/programs/mdrun/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /build-1st/gromacs-2016/src/programs/mdrun/tests/multisimtest.cpp
cd /build-1st/gromacs-2016/build/basic/src/programs/mdrun/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /build-1st/gromacs-2016/src/programs/mdrun/tests/replicaexchange.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build-1st/gromacs-2016/src/gromacs/mdlib/tests/shake.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/commandline/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build-1st/gromacs-2016/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp
cd /build-1st/gromacs-2016/build/basic/src/testutils/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/testutils/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -isystem /build-1st/gromacs-2016/src/testutils/../external/tinyxml2 -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build-1st/gromacs-2016/src/testutils/tests/testasserts_tests.cpp
cd /build-1st/gromacs-2016/build/basic/src/programs/mdrun/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /build-1st/gromacs-2016/src/programs/mdrun/tests/domain_decomposition.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/commandline/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build-1st/gromacs-2016/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp
cd /build-1st/gromacs-2016/build/basic/src/programs/mdrun/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build-1st/gromacs-2016/src/testutils/unittest_main.cpp
cd /build-1st/gromacs-2016/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1
/usr/bin/c++      -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast      -Wl,-z,relro -Wl,--as-needed CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/resource-division.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o  -o ../../../../bin/mdrun-mpi-test -rdynamic ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.2.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lhwloc -lz -ldl -lrt -lm -lfftw3f -lblas -llapack -lblas -llapack -lpthread 
cd /build-1st/gromacs-2016/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build-1st/gromacs-2016/src/gromacs/mdlib/tests/simulationsignal.cpp
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cd /build-1st/gromacs-2016/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build-1st/gromacs-2016 /build-1st/gromacs-2016/src/gromacs/fft/tests /build-1st/gromacs-2016/build/basic /build-1st/gromacs-2016/build/basic/src/gromacs/fft/tests /build-1st/gromacs-2016/build/basic/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color=
Scanning dependencies of target fft-test
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make[4]: Entering directory '/build-1st/gromacs-2016/build/basic'
cd /build-1st/gromacs-2016/build/basic/src/gromacs/fft/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build-1st/gromacs-2016/src/gromacs/fft/tests/fft.cpp
cd /build-1st/gromacs-2016/build/basic/src/testutils/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/testutils/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -isystem /build-1st/gromacs-2016/src/testutils/../external/tinyxml2 -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build-1st/gromacs-2016/src/testutils/tests/xvgtest_tests.cpp
cd /build-1st/gromacs-2016/build/basic/src/testutils/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/testutils/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -isystem /build-1st/gromacs-2016/src/testutils/../external/tinyxml2 -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build-1st/gromacs-2016/src/testutils/unittest_main.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build-1st/gromacs-2016/src/testutils/unittest_main.cpp
cd /build-1st/gromacs-2016/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1
/usr/bin/c++      -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast      -Wl,-z,relro -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o  -o ../../../bin/testutils-test -rdynamic ../../../lib/libtestutils.a ../../../lib/libgromacs.so.2.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lhwloc -lz -ldl -lrt -lm -lfftw3f -lblas -llapack -lblas -llapack -lpthread 
make[4]: Leaving directory '/build-1st/gromacs-2016/build/basic'
[ 86%] Built target testutils-test
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make[4]: Entering directory '/build-1st/gromacs-2016/build/basic'
cd /build-1st/gromacs-2016/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build-1st/gromacs-2016 /build-1st/gromacs-2016/src/gromacs/hardware/tests /build-1st/gromacs-2016/build/basic /build-1st/gromacs-2016/build/basic/src/gromacs/hardware/tests /build-1st/gromacs-2016/build/basic/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color=
Scanning dependencies of target hardware-test
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make[4]: Entering directory '/build-1st/gromacs-2016/build/basic'
cd /build-1st/gromacs-2016/build/basic/src/gromacs/hardware/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build-1st/gromacs-2016/src/gromacs/hardware/tests/hardwaretopology.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/commandline/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build-1st/gromacs-2016/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/fft/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build-1st/gromacs-2016/src/testutils/unittest_main.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1
/usr/bin/c++      -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast      -Wl,-z,relro -Wl,--as-needed CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o  -o ../../../../bin/mdlib-test -rdynamic ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.2.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lhwloc -lz -ldl -lrt -lm -lfftw3f -lblas -llapack -lblas -llapack -lpthread 
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cd /build-1st/gromacs-2016/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build-1st/gromacs-2016 /build-1st/gromacs-2016/src/gromacs/math/tests /build-1st/gromacs-2016/build/basic /build-1st/gromacs-2016/build/basic/src/gromacs/math/tests /build-1st/gromacs-2016/build/basic/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color=
Scanning dependencies of target math-test
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make[4]: Entering directory '/build-1st/gromacs-2016/build/basic'
cd /build-1st/gromacs-2016/build/basic/src/gromacs/math/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/math/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/math-test.dir/functions.cpp.o -c /build-1st/gromacs-2016/src/gromacs/math/tests/functions.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1
/usr/bin/c++      -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast      -Wl,-z,relro -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o  -o ../../../../bin/fft-test -rdynamic ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.2.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lhwloc -lz -ldl -lrt -lm -lfftw3f -lblas -llapack -lblas -llapack -lpthread 
make[4]: Leaving directory '/build-1st/gromacs-2016/build/basic'
[ 88%] Built target fft-test
/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend
make[4]: Entering directory '/build-1st/gromacs-2016/build/basic'
cd /build-1st/gromacs-2016/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build-1st/gromacs-2016 /build-1st/gromacs-2016/src/gromacs/onlinehelp/tests /build-1st/gromacs-2016/build/basic /build-1st/gromacs-2016/build/basic/src/gromacs/onlinehelp/tests /build-1st/gromacs-2016/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color=
Scanning dependencies of target onlinehelp-test
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make[4]: Entering directory '/build-1st/gromacs-2016/build/basic'
cd /build-1st/gromacs-2016/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build-1st/gromacs-2016/src/gromacs/onlinehelp/tests/helpformat.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build-1st/gromacs-2016/src/gromacs/onlinehelp/tests/helpmanager.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/math/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/math/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build-1st/gromacs-2016/src/gromacs/math/tests/invertmatrix.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/hardware/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build-1st/gromacs-2016/src/testutils/unittest_main.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/commandline/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build-1st/gromacs-2016/src/gromacs/commandline/tests/cmdlineparser.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1
/usr/bin/c++      -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast      -Wl,-z,relro -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o  -o ../../../../bin/hardware-test -rdynamic ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.2.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lhwloc -lz -ldl -lrt -lm -lfftw3f -lblas -llapack -lblas -llapack -lpthread 
make[4]: Leaving directory '/build-1st/gromacs-2016/build/basic'
[ 89%] Built target hardware-test
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make[4]: Entering directory '/build-1st/gromacs-2016/build/basic'
cd /build-1st/gromacs-2016/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build-1st/gromacs-2016 /build-1st/gromacs-2016/src/gromacs/options/tests /build-1st/gromacs-2016/build/basic /build-1st/gromacs-2016/build/basic/src/gromacs/options/tests /build-1st/gromacs-2016/build/basic/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color=
Scanning dependencies of target options-test
make[4]: Leaving directory '/build-1st/gromacs-2016/build/basic'
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make[4]: Entering directory '/build-1st/gromacs-2016/build/basic'
cd /build-1st/gromacs-2016/build/basic/src/gromacs/options/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build-1st/gromacs-2016/src/gromacs/options/tests/abstractoptionstorage.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build-1st/gromacs-2016/src/gromacs/onlinehelp/tests/helpwritercontext.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/math/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/math/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build-1st/gromacs-2016/src/gromacs/math/tests/vectypes.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build-1st/gromacs-2016/src/testutils/unittest_main.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/commandline/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build-1st/gromacs-2016/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/math/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/math/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build-1st/gromacs-2016/src/testutils/unittest_main.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1
/usr/bin/c++      -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast      -Wl,-z,relro -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o  -o ../../../../bin/onlinehelp-test -rdynamic ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.2.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lhwloc -lz -ldl -lrt -lm -lfftw3f -lblas -llapack -lblas -llapack -lpthread 
make[4]: Leaving directory '/build-1st/gromacs-2016/build/basic'
[ 89%] Built target onlinehelp-test
/usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend
make[4]: Entering directory '/build-1st/gromacs-2016/build/basic'
cd /build-1st/gromacs-2016/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build-1st/gromacs-2016 /build-1st/gromacs-2016/src/gromacs/random/tests /build-1st/gromacs-2016/build/basic /build-1st/gromacs-2016/build/basic/src/gromacs/random/tests /build-1st/gromacs-2016/build/basic/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color=
Scanning dependencies of target random-test
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make[4]: Entering directory '/build-1st/gromacs-2016/build/basic'
cd /build-1st/gromacs-2016/build/basic/src/gromacs/random/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build-1st/gromacs-2016/src/gromacs/random/tests/exponentialdistribution.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1
/usr/bin/c++      -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast      -Wl,-z,relro -Wl,--as-needed CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o  -o ../../../../bin/math-test -rdynamic ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.2.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lhwloc -lz -ldl -lrt -lm -lfftw3f -lblas -llapack -lblas -llapack -lpthread 
make[4]: Leaving directory '/build-1st/gromacs-2016/build/basic'
[ 89%] Built target math-test
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make[4]: Entering directory '/build-1st/gromacs-2016/build/basic'
cd /build-1st/gromacs-2016/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build-1st/gromacs-2016 /build-1st/gromacs-2016/src/gromacs/utility/tests /build-1st/gromacs-2016/build/basic /build-1st/gromacs-2016/build/basic/src/gromacs/utility/tests /build-1st/gromacs-2016/build/basic/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color=
Scanning dependencies of target utility-test
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make[4]: Entering directory '/build-1st/gromacs-2016/build/basic'
cd /build-1st/gromacs-2016/build/basic/src/gromacs/utility/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build-1st/gromacs-2016/src/gromacs/utility/tests/alignedallocator.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/utility/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build-1st/gromacs-2016/src/gromacs/utility/tests/arrayref.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/commandline/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build-1st/gromacs-2016/src/gromacs/commandline/tests/pargs.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/random/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build-1st/gromacs-2016/src/gromacs/random/tests/gammadistribution.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/options/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build-1st/gromacs-2016/src/gromacs/options/tests/filenameoption.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/commandline/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build-1st/gromacs-2016/src/testutils/unittest_main.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/random/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build-1st/gromacs-2016/src/gromacs/random/tests/normaldistribution.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1
/usr/bin/c++      -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast      -Wl,-z,relro -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o  -o ../../../../bin/commandline-test -rdynamic ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.2.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lhwloc -lz -ldl -lrt -lm -lfftw3f -lblas -llapack -lblas -llapack -lpthread 
make[4]: Leaving directory '/build-1st/gromacs-2016/build/basic'
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make[4]: Entering directory '/build-1st/gromacs-2016/build/basic'
cd /build-1st/gromacs-2016/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build-1st/gromacs-2016 /build-1st/gromacs-2016/src/gromacs/fileio/tests /build-1st/gromacs-2016/build/basic /build-1st/gromacs-2016/build/basic/src/gromacs/fileio/tests /build-1st/gromacs-2016/build/basic/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color=
Scanning dependencies of target fileio-test
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make[4]: Entering directory '/build-1st/gromacs-2016/build/basic'
cd /build-1st/gromacs-2016/build/basic/src/gromacs/fileio/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build-1st/gromacs-2016/src/gromacs/fileio/tests/confio.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/options/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build-1st/gromacs-2016/src/gromacs/options/tests/filenameoptionmanager.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/fileio/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build-1st/gromacs-2016/src/gromacs/fileio/tests/readinp.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/random/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/random-test.dir/seed.cpp.o -c /build-1st/gromacs-2016/src/gromacs/random/tests/seed.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/fileio/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build-1st/gromacs-2016/src/gromacs/fileio/tests/tngio.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/fileio/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build-1st/gromacs-2016/src/testutils/unittest_main.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/random/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build-1st/gromacs-2016/src/gromacs/random/tests/tabulatednormaldistribution.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1
/usr/bin/c++      -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast      -Wl,-z,relro -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o  -o ../../../../bin/fileio-test -rdynamic ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.2.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lhwloc -lz -ldl -lrt -lm -lfftw3f -lblas -llapack -lblas -llapack -lpthread 
cd /build-1st/gromacs-2016/build/basic/src/gromacs/options/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/options-test.dir/option.cpp.o -c /build-1st/gromacs-2016/src/gromacs/options/tests/option.cpp
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make[4]: Entering directory '/build-1st/gromacs-2016/build/basic'
cd /build-1st/gromacs-2016/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build-1st/gromacs-2016 /build-1st/gromacs-2016/src/gromacs/pulling/tests /build-1st/gromacs-2016/build/basic /build-1st/gromacs-2016/build/basic/src/gromacs/pulling/tests /build-1st/gromacs-2016/build/basic/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color=
Scanning dependencies of target pull-test
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/usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build
make[4]: Entering directory '/build-1st/gromacs-2016/build/basic'
cd /build-1st/gromacs-2016/build/basic/src/gromacs/pulling/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build-1st/gromacs-2016/src/gromacs/pulling/tests/pull.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/options/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build-1st/gromacs-2016/src/gromacs/options/tests/optionsassigner.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/pulling/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build-1st/gromacs-2016/src/testutils/unittest_main.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1
/usr/bin/c++      -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast      -Wl,-z,relro -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o  -o ../../../../bin/pull-test -rdynamic ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.2.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lhwloc -lz -ldl -lrt -lm -lfftw3f -lblas -llapack -lblas -llapack -lpthread 
make[4]: Leaving directory '/build-1st/gromacs-2016/build/basic'
[ 90%] Built target pull-test
cd /build-1st/gromacs-2016/build/basic/src/gromacs/random/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build-1st/gromacs-2016/src/gromacs/random/tests/threefry.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/random/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build-1st/gromacs-2016/src/gromacs/random/tests/uniformintdistribution.cpp
cd /build-1st/gromacs-2016/build/basic/src/gromacs/random/tests && /usr/bin/c++   -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build-1st/gromacs-2016/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/gtest/include -isystem /build-1st/gromacs-2016/src/external/gmock-1.7.0/include -I/build-1st/gromacs-2016/build/basic/src -I/build-1st/gromacs-2016/src/external/thread_mpi/include -I/build-1st/gromacs-2016/src -I/build-1st/gromacs-2016/build/basic/src/external/tng_io/include -I/build-1st/gromacs-2016/src/external/tng_io/include  -g -O2 -fdebug-prefix-map=/build-1st/gromacs-2016=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -std=c++0x   -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast     -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build-1st/gromacs-2016/src/gromacs/random/tests/uniformrealdistribution.cpp
/srv/reproducible-results/rbuild-debian-5KEh3Ybs/tmp.mpHkYngjxC:	 45.4% -- replaced with /srv/reproducible-results/rbuild-debian-5KEh3Ybs/tmp.mpHkYngjxC.gz
FATAL: null
java.lang.NullPointerException
	at hudson.plugins.build_timeout.BuildTimeoutWrapper$EnvironmentImpl.tearDown(BuildTimeoutWrapper.java:199)
	at hudson.model.Build$BuildExecution.doRun(Build.java:173)
	at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:534)
	at hudson.model.Run.execute(Run.java:1741)
	at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
	at hudson.model.ResourceController.execute(ResourceController.java:98)
	at hudson.model.Executor.run(Executor.java:410)