[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_15 #54264
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Thu Oct 20 00:57:43 UTC 2016
https://jenkins.debian.net/job/reproducible_builder_amd64_15/54264/------------------------------------------
[...truncated 15153 lines...]
-make[4]: Nothing to be done for 'install-data-am'.
-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/src/util'
-make[3]: Leaving directory '/build-1st/exonerate-2.4.0/src/util'
-make[3]: Entering directory '/build-1st/exonerate-2.4.0/src'
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/src'
-make[4]: Nothing to be done for 'install-exec-am'.
-make[4]: Nothing to be done for 'install-data-am'.
-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/src'
-make[3]: Leaving directory '/build-1st/exonerate-2.4.0/src'
-make[2]: Leaving directory '/build-1st/exonerate-2.4.0/src'
+make[3] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/src/util »
+make[4] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/src/util »
+ /bin/mkdir -p '/build-2nd/exonerate-2.4.0/debian/exonerate/usr/bin'
+ /usr/bin/install -c fastaclean fastaclip fastachecksum fastacomposition fastadiff fastaexplode fastafetch fastahardmask fastaindex fastalength fastanrdb fastaoverlap fastareformat fastaremove fastarevcomp fastasoftmask fastasort fastasplit fastasubseq fastatranslate fastavalidcds fasta2esd fastaannotatecdna esd2esi '/build-2nd/exonerate-2.4.0/debian/exonerate/usr/bin'
+make[4]: rien à faire pour « install-data-am ».
+make[4] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/src/util »
+make[3] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/src/util »
+make[3] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/src »
+make[4] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/src »
+make[4]: rien à faire pour « install-exec-am ».
+make[4]: rien à faire pour « install-data-am ».
+make[4] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/src »
+make[3] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/src »
+make[2] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/src »
Making install in test
-make[2]: Entering directory '/build-1st/exonerate-2.4.0/test'
+make[2] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test »
Making install in data
-make[3]: Entering directory '/build-1st/exonerate-2.4.0/test/data'
+make[3] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test/data »
Making install in cdna
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/test/data/cdna'
-make[5]: Entering directory '/build-1st/exonerate-2.4.0/test/data/cdna'
-make[5]: Nothing to be done for 'install-exec-am'.
-make[5]: Nothing to be done for 'install-data-am'.
-make[5]: Leaving directory '/build-1st/exonerate-2.4.0/test/data/cdna'
-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/test/data/cdna'
+make[4] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test/data/cdna »
+make[5] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test/data/cdna »
+make[5]: rien à faire pour « install-exec-am ».
+make[5]: rien à faire pour « install-data-am ».
+make[5] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test/data/cdna »
+make[4] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test/data/cdna »
Making install in protein
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/test/data/protein'
-make[5]: Entering directory '/build-1st/exonerate-2.4.0/test/data/protein'
-make[5]: Nothing to be done for 'install-exec-am'.
-make[5]: Nothing to be done for 'install-data-am'.
-make[5]: Leaving directory '/build-1st/exonerate-2.4.0/test/data/protein'
-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/test/data/protein'
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/test/data'
-make[5]: Entering directory '/build-1st/exonerate-2.4.0/test/data'
-make[5]: Nothing to be done for 'install-exec-am'.
-make[5]: Nothing to be done for 'install-data-am'.
-make[5]: Leaving directory '/build-1st/exonerate-2.4.0/test/data'
-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/test/data'
-make[3]: Leaving directory '/build-1st/exonerate-2.4.0/test/data'
+make[4] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test/data/protein »
+make[5] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test/data/protein »
+make[5]: rien à faire pour « install-exec-am ».
+make[5]: rien à faire pour « install-data-am ».
+make[5] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test/data/protein »
+make[4] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test/data/protein »
+make[4] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test/data »
+make[5] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test/data »
+make[5]: rien à faire pour « install-exec-am ».
+make[5]: rien à faire pour « install-data-am ».
+make[5] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test/data »
+make[4] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test/data »
+make[3] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test/data »
Making install in exonerate
-make[3]: Entering directory '/build-1st/exonerate-2.4.0/test/exonerate'
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/test/exonerate'
-make[4]: Nothing to be done for 'install-exec-am'.
-make[4]: Nothing to be done for 'install-data-am'.
-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/test/exonerate'
-make[3]: Leaving directory '/build-1st/exonerate-2.4.0/test/exonerate'
+make[3] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test/exonerate »
+make[4] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test/exonerate »
+make[4]: rien à faire pour « install-exec-am ».
+make[4]: rien à faire pour « install-data-am ».
+make[4] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test/exonerate »
+make[3] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test/exonerate »
Making install in ipcress
-make[3]: Entering directory '/build-1st/exonerate-2.4.0/test/ipcress'
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/test/ipcress'
-make[4]: Nothing to be done for 'install-exec-am'.
-make[4]: Nothing to be done for 'install-data-am'.
-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/test/ipcress'
-make[3]: Leaving directory '/build-1st/exonerate-2.4.0/test/ipcress'
+make[3] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test/ipcress »
+make[4] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test/ipcress »
+make[4]: rien à faire pour « install-exec-am ».
+make[4]: rien à faire pour « install-data-am ».
+make[4] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test/ipcress »
+make[3] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test/ipcress »
Making install in util
-make[3]: Entering directory '/build-1st/exonerate-2.4.0/test/util'
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/test/util'
-make[4]: Nothing to be done for 'install-exec-am'.
-make[4]: Nothing to be done for 'install-data-am'.
-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/test/util'
-make[3]: Leaving directory '/build-1st/exonerate-2.4.0/test/util'
-make[3]: Entering directory '/build-1st/exonerate-2.4.0/test'
-make[4]: Entering directory '/build-1st/exonerate-2.4.0/test'
-make[4]: Nothing to be done for 'install-exec-am'.
-make[4]: Nothing to be done for 'install-data-am'.
-make[4]: Leaving directory '/build-1st/exonerate-2.4.0/test'
-make[3]: Leaving directory '/build-1st/exonerate-2.4.0/test'
-make[2]: Leaving directory '/build-1st/exonerate-2.4.0/test'
-make[2]: Entering directory '/build-1st/exonerate-2.4.0'
-make[3]: Entering directory '/build-1st/exonerate-2.4.0'
-make[3]: Nothing to be done for 'install-exec-am'.
-make[3]: Nothing to be done for 'install-data-am'.
-make[3]: Leaving directory '/build-1st/exonerate-2.4.0'
-make[2]: Leaving directory '/build-1st/exonerate-2.4.0'
-make[1]: Leaving directory '/build-1st/exonerate-2.4.0'
+make[3] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test/util »
+make[4] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test/util »
+make[4]: rien à faire pour « install-exec-am ».
+make[4]: rien à faire pour « install-data-am ».
+make[4] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test/util »
+make[3] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test/util »
+make[3] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test »
+make[4] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0/test »
+make[4]: rien à faire pour « install-exec-am ».
+make[4]: rien à faire pour « install-data-am ».
+make[4] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test »
+make[3] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test »
+make[2] : on quitte le répertoire « /build-2nd/exonerate-2.4.0/test »
+make[2] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0 »
+make[3] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0 »
+make[3]: rien à faire pour « install-exec-am ».
+make[3]: rien à faire pour « install-data-am ».
+make[3] : on quitte le répertoire « /build-2nd/exonerate-2.4.0 »
+make[2] : on quitte le répertoire « /build-2nd/exonerate-2.4.0 »
+make[1] : on quitte le répertoire « /build-2nd/exonerate-2.4.0 »
dh_installdocs
debian/rules override_dh_installchangelogs
-make[1]: Entering directory '/build-1st/exonerate-2.4.0'
+make[1] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0 »
dh_installchangelogs -k ChangeLog
-make[1]: Leaving directory '/build-1st/exonerate-2.4.0'
+make[1] : on quitte le répertoire « /build-2nd/exonerate-2.4.0 »
debian/rules override_dh_installexamples
-make[1]: Entering directory '/build-1st/exonerate-2.4.0'
+make[1] : on entre dans le répertoire « /build-2nd/exonerate-2.4.0 »
dh_installexamples
-mkdir -p /build-1st/exonerate-2.4.0/debian/exonerate/usr/share/doc/exonerate/examples;
-cp -a test/* /build-1st/exonerate-2.4.0/debian/exonerate/usr/share/doc/exonerate/examples/;
-find /build-1st/exonerate-2.4.0/debian/exonerate/usr/share/doc/exonerate/examples \( -name "Makefile*" -o -name "*.log" -o -name "*.trs" \) -exec rm \{\} \;
-for testfile in `find /build-1st/exonerate-2.4.0/debian/exonerate/usr/share/doc/exonerate/examples -name "*.sh"` ; do \
+mkdir -p /build-2nd/exonerate-2.4.0/debian/exonerate/usr/share/doc/exonerate/examples;
+cp -a test/* /build-2nd/exonerate-2.4.0/debian/exonerate/usr/share/doc/exonerate/examples/;
+find /build-2nd/exonerate-2.4.0/debian/exonerate/usr/share/doc/exonerate/examples \( -name "Makefile*" -o -name "*.log" -o -name "*.trs" \) -exec rm \{\} \;
+for testfile in `find /build-2nd/exonerate-2.4.0/debian/exonerate/usr/share/doc/exonerate/examples -name "*.sh"` ; do \
sed -i -e "s#../../src/util/#/usr/bin/#" \
-e "s#../../src/program/#/usr/bin/#" \
-e "s#../data/#./data/#" \
${testfile} ; \
done
-make[1]: Leaving directory '/build-1st/exonerate-2.4.0'
+make[1] : on quitte le répertoire « /build-2nd/exonerate-2.4.0 »
dh_installman
dh_perl
dh_link
@@ -3254,7 +3265,7 @@
dh_strip
dh_makeshlibs
dh_shlibdeps
-dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/exonerate/usr/bin/fastafetch debian/exonerate/usr/bin/fastaremove debian/exonerate/usr/bin/fastanrdb debian/exonerate/usr/bin/fastarevcomp debian/exonerate/usr/bin/fastachecksum debian/exonerate/usr/bin/fastareformat debian/exonerate/usr/bin/fasta2esd debian/exonerate/usr/bin/fastaclean debian/exonerate/usr/bin/fastahardmask debian/exonerate/usr/bin/fastatranslate debian/exonerate/usr/bin/fastasort debian/exonerate/usr/bin/fastacomposition debian/exonerate/usr/bin/fastaclip debian/exonerate/usr/bin/fastaoverlap debian/exonerate/usr/bin/fastadiff debian/exonerate/usr/bin/exonerate-server debian/exonerate/usr/bin/fastasplit debian/exonerate/usr/bin/fastasubseq debian/exonerate/usr/bin/fastasoftmask debian/exonerate/usr/bin/fastalength debian/exonerate/usr/bin/fastaannotatecdna debian/exonerate/usr/bin/exonerate debian/exonerate/usr/bin/fastaindex debian/exonerate/usr/bin/fastavalidcds debian/exonerate/usr/bin/ipcress debian/exonerate/usr/bin/esd2esi debian/exonerate/usr/bin/fastaexplode were not linked against libgthread-2.0.so.0 (they use none of the library's symbols)
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/exonerate/usr/bin/fastaannotatecdna debian/exonerate/usr/bin/exonerate-server debian/exonerate/usr/bin/fastachecksum debian/exonerate/usr/bin/fastavalidcds debian/exonerate/usr/bin/fastarevcomp debian/exonerate/usr/bin/fastaexplode debian/exonerate/usr/bin/exonerate debian/exonerate/usr/bin/fastaindex debian/exonerate/usr/bin/fastacomposition debian/exonerate/usr/bin/fastatranslate debian/exonerate/usr/bin/fastaremove debian/exonerate/usr/bin/esd2esi debian/exonerate/usr/bin/fastanrdb debian/exonerate/usr/bin/ipcress debian/exonerate/usr/bin/fastafetch debian/exonerate/usr/bin/fastadiff debian/exonerate/usr/bin/fastaoverlap debian/exonerate/usr/bin/fastahardmask debian/exonerate/usr/bin/fastaclean debian/exonerate/usr/bin/fasta2esd debian/exonerate/usr/bin/fastareformat debian/exonerate/usr/bin/fastasoftmask debian/exonerate/usr/bin/fastalength debian/exonerate/usr/bin/fastasplit debian/exonerate/usr/bin/fastaclip debian/exonerate/usr/bin/fastasort debian/exonerate/usr/bin/fastasubseq were not linked against libgthread-2.0.so.0 (they use none of the library's symbols)
dh_installdeb
dh_gencontrol
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
@@ -3270,12 +3281,14 @@
dpkg-source --after-build exonerate-2.4.0
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/8160/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/8160/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/53648 and its subdirectories
-I: Current time: Wed Oct 19 12:38:30 GMT+12 2016
-I: pbuilder-time-stamp: 1476923910
+I: removing directory /srv/workspace/pbuilder/8160 and its subdirectories
+I: Current time: mercredi 22 novembre 2017, 21:17:09 (UTC+1400)
+I: pbuilder-time-stamp: 1511335029
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/exonerate_2.4.0-2.diff: 96.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/exonerate_2.4.0-2.diff.gz
b2/build.log: 96.0%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 96.1%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/exonerate_2.4.0-2.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-ozg33DsA/tmp.p74hcRf4t7
+ mv /srv/reproducible-results/rbuild-debian-ozg33DsA/tmp.p74hcRf4t7 /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/exonerate_2.4.0-2.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/exonerate_2.4.0-2.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ call_diffoscope_on_buildinfo_files
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-ozg33DsA
+ local TMPLOG=/srv/reproducible-results/rbuild-debian-ozg33DsA/tmp.GaKUHQh7Bu
+ local TIMEOUT=120m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-ozg33DsA -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/rbuild-debian-ozg33DsA/dbd-tmp-zHXx73p
++ schroot --directory /srv/reproducible-results/rbuild-debian-ozg33DsA -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 61'
++ echo diffoscope 61
++ grep '^E: 15binfmt: update-binfmts: unable to open'
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ log_info 'diffoscope 61 will be used to compare the two builds:'
+ _log I: 'diffoscope 61 will be used to compare the two builds:'
+ local prefix=I:
+ shift 1
+ tee -a /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/exonerate_2.4.0-2.rbuild.log
++ date -u
+ echo -e 'Thu Oct 20 00:54:14 UTC 2016 I: diffoscope 61 will be used to compare the two builds:'
Thu Oct 20 00:54:14 UTC 2016 I: diffoscope 61 will be used to compare the two builds:
+ set +e
+ set -x
+ timeout 120m nice schroot --directory /srv/reproducible-results/rbuild-debian-ozg33DsA -c source:jenkins-reproducible-unstable-diffoscope -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian-ozg33DsA/dbd-tmp-zHXx73p ; diffoscope --html /srv/reproducible-results/rbuild-debian-ozg33DsA/exonerate_2.4.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian-ozg33DsA/exonerate_2.4.0-2.diffoscope.txt /srv/reproducible-results/rbuild-debian-ozg33DsA/b1/exonerate_2.4.0-2_amd64.buildinfo /srv/reproducible-results/rbuild-debian-ozg33DsA/b2/exonerate_2.4.0-2_amd64.buildinfo'
+ RESULT=1
++ grep '^E: 15binfmt: update-binfmts: unable to open' /srv/reproducible-results/rbuild-debian-ozg33DsA/tmp.GaKUHQh7Bu
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ false
+ set +x
Thu Oct 20 00:57:43 UTC 2016 E: exonerate failed to build reproducibly in unstable on amd64.
mv: error writing ‘/var/lib/jenkins/userContent/reproducible/debian/dbd/unstable/amd64/exonerate_2.4.0-2.diffoscope.html’: No space left on device
mv: failed to extend ‘/var/lib/jenkins/userContent/reproducible/debian/dbd/unstable/amd64/exonerate_2.4.0-2.diffoscope.html’: No space left on device
/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/exonerate_2.4.0-2.rbuild.log:
gzip: /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/exonerate_2.4.0-2.rbuild.log.gz: No space left on device
Thu 20 Oct 00:57:43 UTC 2016 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-gKOQABae, which will now be removed.
Build step 'Execute shell' marked build as failure
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