[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_26 #4428
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Wed Dec 7 13:35:38 UTC 2016
https://jenkins.debian.net/job/reproducible_builder_amd64_26/4428/------------------------------------------
[...truncated 5399 lines...]
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1) ...
Setting up libxmuu1:amd64 (2:1.1.2-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libldap-2.4-2:amd64 (2.4.44+dfsg-1) ...
Setting up libxcb-shm0:amd64 (1.12-1) ...
Setting up libxt6:amd64 (1:1.1.5-1) ...
Setting up libxrender1:amd64 (1:0.9.9-2) ...
Setting up libkrb5-3:amd64 (1.15~beta1-1) ...
Setting up libxft2:amd64 (2.3.2-1) ...
Setting up fontconfig (2.11.0-6.7) ...
Regenerating fonts cache... done.
Setting up liblapack-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up libxext6:amd64 (2:1.3.3-1) ...
Setting up po-debconf (1.0.20) ...
Setting up libxss1:amd64 (1:1.2.2-1) ...
Setting up libgssapi-krb5-2:amd64 (1.15~beta1-1) ...
Setting up xauth (1:1.0.9-1) ...
Setting up libpango-1.0-0:amd64 (1.40.3-3) ...
Setting up libcairo2:amd64 (1.14.6-1.1) ...
Setting up libcurl3:amd64 (7.50.1-1) ...
Setting up libtk8.6:amd64 (8.6.6-1) ...
Setting up libpangoft2-1.0-0:amd64 (1.40.3-3) ...
Setting up libpangocairo-1.0-0:amd64 (1.40.3-3) ...
Setting up r-base-core (3.3.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-nnet (7.3-12-1) ...
Setting up r-base-dev (3.3.2-1) ...
Setting up r-cran-spatial (7.3-11-1) ...
Setting up r-cran-mass (7.3-45-1) ...
Setting up r-cran-mvtnorm (1.0-5-2) ...
Setting up r-cran-cluster (2.0.5-1) ...
Setting up r-cran-boot (1.3-18-2) ...
Setting up r-cran-codetools (0.2-15-1) ...
Setting up r-cran-lattice (0.20-34-1) ...
Setting up r-cran-nlme (3.1.128-2) ...
Setting up r-cran-foreign (0.8.67-1) ...
Setting up r-cran-class (7.3-14-1) ...
Setting up r-cran-kernsmooth (2.23-15-2) ...
Setting up r-cran-zoo (1.7-13-2) ...
Setting up r-cran-sandwich (2.3-4-2) ...
Setting up r-cran-matrix (1.2-7.1-1) ...
Setting up r-cran-mgcv (1.8-16-1) ...
Setting up r-cran-survival (2.40-1-1) ...
Setting up r-cran-th.data (1.0-7-2) ...
Setting up r-cran-rpart (4.1-10-2) ...
Setting up r-cran-multcomp (1.4-6-1) ...
Setting up r-recommended (3.3.2-1) ...
Setting up r-base (3.3.2-1) ...
Setting up r-cran-modeltools (0.2-21-1) ...
Setting up dh-autoreconf (12) ...
Setting up debhelper (10.2.2) ...
Setting up dh-r (20160916) ...
Setting up dh-strip-nondeterminism (0.028-1) ...
Processing triggers for libc-bin (2.24-7) ...
Processing triggers for ca-certificates (20161102) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version (1.21-2).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b --buildinfo-id=amd64 -rfakeroot
dpkg-buildpackage: warning: --buildinfo-id is deprecated, it is without effect
dpkg-buildpackage: info: source package r-cran-coin
dpkg-buildpackage: info: source version 1.1-3-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille at debian.org>
dpkg-source --before-build r-cran-coin-1.1-3
dpkg-buildpackage: info: host architecture amd64
fakeroot debian/rules clean
dh clean --buildsystem R
dh_testdir -O--buildsystem=R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build
make: 'build' is up to date.
fakeroot debian/rules binary
dh binary --buildsystem R
dh_testdir -O--buildsystem=R
dh_update_autotools_config -O--buildsystem=R
dh_autoreconf -O--buildsystem=R
dh_auto_configure -O--buildsystem=R
dh_auto_build -O--buildsystem=R
dh_auto_test -O--buildsystem=R
dh_testroot -O--buildsystem=R
dh_prep -O--buildsystem=R
dh_installdirs -O--buildsystem=R
dh_auto_install -O--buildsystem=R
I: R Package: coin Version: 1.1-3
I: Building using R version 3.3.2-1
I: R API version: r-api-3
I: Using built-time from d/changelog: Wed, 30 Nov 2016 15:46:10 +0100
mkdir -p /build/r-cran-coin-1.1-3/debian/r-cran-coin/usr/lib/R/site-library
R CMD INSTALL -l /build/r-cran-coin-1.1-3/debian/r-cran-coin/usr/lib/R/site-library --clean . "--built-timestamp='Wed, 30 Nov 2016 15:46:10 +0100'"
* installing *source* package 'coin' ...
** package 'coin' successfully unpacked and MD5 sums checked
** libs
make[1]: Entering directory '/build/r-cran-coin-1.1-3/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Classes.c -o Classes.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Helpers.c -o Helpers.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LinearStatistic.c -o LinearStatistic.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c StreitbergRoehmel.c -o StreitbergRoehmel.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vandeWiel.c -o vandeWiel.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o coin.so Classes.o Helpers.o LinearStatistic.o StreitbergRoehmel.o vandeWiel.o -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/build/r-cran-coin-1.1-3/src'
make[1]: Entering directory '/build/r-cran-coin-1.1-3/src'
make[1]: Leaving directory '/build/r-cran-coin-1.1-3/src'
installing to /build/r-cran-coin-1.1-3/debian/r-cran-coin/usr/lib/R/site-library/coin/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (coin)
W: Ignoring specified R dependency: R (>= 2.14.0)
I: Using r-cran-survival for Depends:survival
I: Using r-cran-xtable for Suggests:xtable
I: Using r-cran-e1071 for Suggests:e1071
I: Using r-cran-vcd for Suggests:vcd
I: Using r-cran-th.data for Suggests:TH.data (>= 1.0-7)
I: Using r-cran-modeltools for Imports:modeltools (>= 0.2-9)
I: Using r-cran-mvtnorm for Imports:mvtnorm (>= 1.0-5)
I: Using r-cran-multcomp for Imports:multcomp
dh_install -O--buildsystem=R
dh_installdocs -O--buildsystem=R
dh_installchangelogs -O--buildsystem=R
dh_installexamples -O--buildsystem=R
dh_installman -O--buildsystem=R
dh_installcatalogs -O--buildsystem=R
dh_installcron -O--buildsystem=R
dh_installdebconf -O--buildsystem=R
dh_installemacsen -O--buildsystem=R
dh_installifupdown -O--buildsystem=R
dh_installinfo -O--buildsystem=R
dh_systemd_enable -O--buildsystem=R
dh_installinit -O--buildsystem=R
dh_systemd_start -O--buildsystem=R
dh_installmenu -O--buildsystem=R
dh_installmime -O--buildsystem=R
dh_installmodules -O--buildsystem=R
dh_installlogcheck -O--buildsystem=R
dh_installlogrotate -O--buildsystem=R
dh_installpam -O--buildsystem=R
dh_installppp -O--buildsystem=R
dh_installudev -O--buildsystem=R
dh_installgsettings -O--buildsystem=R
dh_bugfiles -O--buildsystem=R
dh_ucf -O--buildsystem=R
dh_lintian -O--buildsystem=R
dh_gconf -O--buildsystem=R
dh_icons -O--buildsystem=R
dh_perl -O--buildsystem=R
dh_usrlocal -O--buildsystem=R
dh_link -O--buildsystem=R
dh_installwm -O--buildsystem=R
dh_installxfonts -O--buildsystem=R
dh_strip_nondeterminism -O--buildsystem=R
dh_compress -O--buildsystem=R
dh_fixperms -O--buildsystem=R
dh_strip -O--buildsystem=R
dh_makeshlibs -O--buildsystem=R
dh_shlibdeps -O--buildsystem=R
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-coin/usr/lib/R/site-library/coin/libs/coin.so was not linked against libquadmath.so.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-coin/usr/lib/R/site-library/coin/libs/coin.so was not linked against libblas.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-coin/usr/lib/R/site-library/coin/libs/coin.so was not linked against libm.so.6 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-coin/usr/lib/R/site-library/coin/libs/coin.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
dh_installdeb -O--buildsystem=R
dh_gencontrol -O--buildsystem=R
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -O--buildsystem=R
dh_builddeb -O--buildsystem=R
dpkg-deb: building package 'r-cran-coin-dbgsym' in '../r-cran-coin-dbgsym_1.1-3-1_amd64.deb'.
dpkg-deb: building package 'r-cran-coin' in '../r-cran-coin_1.1-3-1_amd64.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=binary >../r-cran-coin_1.1-3-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build r-cran-coin-1.1-3
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/63312 and its subdirectories
I: Current time: Tue Jan 9 07:56:35 -12 2018
I: pbuilder-time-stamp: 1515527795
9c9
< binutils (= 2.27.51.20161127-1),
---
> binutils (= 2.27.51.20161201-1),
25c25
< dh-r (= 20160916),
---
> dh-r (= 20161130),
175c175
< libsystemd0 (= 232-6),
---
> libsystemd0 (= 232-7),
188c188
< libudev1 (= 232-6),
---
> libudev1 (= 232-7),
Error: database is locked
Starting cleanup.
/srv/reproducible-results/rbuild-debian-1prhkbQn/tmp.5L4b7swe9K: 81.4% -- replaced with /srv/reproducible-results/rbuild-debian-1prhkbQn/tmp.5L4b7swe9K.gz
INFO: Starting at 2016-12-07 13:34:37.945252
CRITICAL: SQLite database locked, could not execute query:
CRITICAL: "SELECT r.status, r.version, r.build_date
CRITICAL: FROM results AS r JOIN sources AS s
CRITICAL: ON r.package_id=s.id WHERE s.name='r-cran-coin'
CRITICAL: AND s.architecture='amd64' AND s.suite='testing'"
CRITICAL: Exiting script.
INFO: Finished at 2016-12-07 13:35:38.082087, took: 0:01:00.137003
Warning: cannot update html pages for r-cran-coin
All cleanup done.
Wed 7 Dec 13:35:38 UTC 2016 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-EroagRhE, which will now be removed.
Build step 'Execute shell' marked build as failure
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