[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_armhf_13 #11909
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Sun Dec 18 11:05:46 UTC 2016
https://jenkins.debian.net/job/reproducible_builder_armhf_13/11909/------------------------------------------
[...truncated 186 lines...]
dpkg-source: warning: failed to verify signature on ./fastqc_0.11.5+dfsg-6.dsc
dpkg-source: info: extracting fastqc in fastqc-0.11.5+dfsg
dpkg-source: info: unpacking fastqc_0.11.5+dfsg.orig.tar.xz
dpkg-source: info: unpacking fastqc_0.11.5+dfsg-6.debian.tar.xz
dpkg-source: info: applying build_xml.patch
dpkg-source: info: applying fastqc.patch
dpkg-source: info: applying fix-help-call.patch
dpkg-source: info: applying set_configuration_path.patch
dpkg-source: info: applying adapt_to_htslib.patch
dpkg-source: info: applying drop-fast5.patch
dpkg-source: info: applying htsjdk-api.patch
I: Installing the build-deps
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint at lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 10), javahelper, default-jdk, ant, libhtsjdk-java, libjbzip2-java, libcommons-math3-java
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 18318 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper (>= 10); however:
Package debhelper is not installed.
pbuilder-satisfydepends-dummy depends on javahelper; however:
Package javahelper is not installed.
pbuilder-satisfydepends-dummy depends on default-jdk; however:
Package default-jdk is not installed.
pbuilder-satisfydepends-dummy depends on ant; however:
Package ant is not installed.
pbuilder-satisfydepends-dummy depends on libhtsjdk-java; however:
Package libhtsjdk-java is not installed.
pbuilder-satisfydepends-dummy depends on libjbzip2-java; however:
Package libjbzip2-java is not installed.
pbuilder-satisfydepends-dummy depends on libcommons-math3-java; however:
Package libcommons-math3-java is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
adwaita-icon-theme{a} ant{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} ca-certificates-java{a} dconf-gsettings-backend{a} dconf-service{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} glib-networking{a} glib-networking-common{a} glib-networking-services{a} gnome-icon-theme{a} groff-base{a} gsettings-desktop-schemas{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} javahelper{a} libapache-pom-java{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libasyncns0{a} libatk-bridge2.0-0{a} libatk-wrapper-java{a} libatk-wrapper-java-jni{a} libatk1.0-0{a} libatk1.0-data{a} libatspi2.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbsd0{a} libcairo-gobject2{a} libcairo2{a} libcap2{a} libcolord2{a} libcommons-compress-java{a} libcommons-jexl2-java{a} libcommons-logging-java{a} libcommons-math3-java{a} libcommons-parent-java{a} libcroco3{a} libcups2{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdrm2{a} libegl1-mesa{a} libepoxy0{a} libexpat1{a} libffi6{a} libfile-stripnondeterminism-perl{a} libflac8{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libgbm1{a} libgdk-pixbuf2.0-0{a} libgdk-pixbuf2.0-common{a} libgif7{a} libgl1-mesa-glx{a} libglapi-mesa{a} libglib2.0-0{a} libgnutls30{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0{a} libgtk-3-common{a} libgtk2.0-0{a} libgtk2.0-common{a} libharfbuzz0b{a} libhogweed4{a} libhtsjdk-java{ab} libice6{a} libicu57{a} libidn11{a} libjbig0{a} libjbzip2-java{a} libjpeg62-turbo{a} libjson-c3{a} libjson-glib-1.0-0{a} libjson-glib-1.0-common{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libnettle6{a} libnspr4{a} libnss3{a} libogg0{a} libp11-kit0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libproxy1v5{a} libpulse0{a} libpython3-stdlib{a} libpython3.5-minimal{a} libpython3.5-stdlib{a} librest-0.7-0{a} librsvg2-2{a} librsvg2-common{a} libsigsegv2{a} libsm6{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libsndfile1{a} libsoup-gnome2.4-1{a} libsoup2.4-1{a} libssl1.1{a} libtasn1-6{a} libthai-data{a} libthai0{a} libtiff5{a} libtimedate-perl{a} libtool{a} libunistring0{a} libvorbis0a{a} libvorbisenc2{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1-mesa{a} libwayland-server0{a} libwrap0{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxft2{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxt6{a} libxtst6{a} libxv1{a} libxxf86dga1{a} libxxf86vm1{a} libxz-java{a} m4{a} man-db{a} mime-support{a} openjdk-8-jdk{a} openjdk-8-jdk-headless{a} openjdk-8-jre{a} openjdk-8-jre-headless{a} openssl{a} po-debconf{a} python3{a} python3-minimal{a} python3.5{a} python3.5-minimal{a} shared-mime-info{a} ucf{a} x11-common{a} x11-utils{a} xkb-data{a}
The following packages are RECOMMENDED but will NOT be installed:
ant-optional at at-spi2-core curl dbus debian-keyring default-java-plugin dput dput-ng dupload equivs fonts-dejavu-extra krb5-locales libdistro-info-perl libencode-locale-perl libgail-common libgconf-2-4 libgl1-mesa-dri libglib2.0-data libgnome-2-0 libgnomevfs2-0 libgtk-3-bin libgtk2.0-bin libltdl-dev liblwp-protocol-https-perl libmail-sendmail-perl libsoap-lite-perl liburi-perl libwww-perl libxt-dev licensecheck lintian lynx-cur openjdk-8-jre-jamvm patchutils python3-debian python3-magic strace tcpd unzip wdiff wget xdg-user-dirs xml-core
0 packages upgraded, 210 newly installed, 0 to remove and 0 not upgraded.
Need to get 117 MB of archives. After unpacking 383 MB will be used.
The following packages have unmet dependencies:
libhtsjdk-java : Depends: libngs-java which is a virtual package and is not provided by any available package
Unable to resolve dependencies! Giving up...
The following NEW packages will be installed:
adwaita-icon-theme{a} ant{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} ca-certificates-java{a} dconf-gsettings-backend{a} dconf-service{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} glib-networking{a} glib-networking-common{a} glib-networking-services{a} gnome-icon-theme{a} groff-base{a} gsettings-desktop-schemas{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} javahelper{a} libapache-pom-java{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libasyncns0{a} libatk-bridge2.0-0{a} libatk-wrapper-java{a} libatk-wrapper-java-jni{a} libatk1.0-0{a} libatk1.0-data{a} libatspi2.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbsd0{a} libcairo-gobject2{a} libcairo2{a} libcap2{a} libcolord2{a} libcommons-compress-java{a} libcommons-jexl2-java{a} libcommons-logging-java{a} libcommons-math3-java{a} libcommons-parent-java{a} libcroco3{a} libcups2{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdrm2{a} libegl1-mesa{a} libepoxy0{a} libexpat1{a} libffi6{a} libfile-stripnondeterminism-perl{a} libflac8{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libgbm1{a} libgdk-pixbuf2.0-0{a} libgdk-pixbuf2.0-common{a} libgif7{a} libgl1-mesa-glx{a} libglapi-mesa{a} libglib2.0-0{a} libgnutls30{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0{a} libgtk-3-common{a} libgtk2.0-0{a} libgtk2.0-common{a} libharfbuzz0b{a} libhogweed4{a} libhtsjdk-java{ab} libice6{a} libicu57{a} libidn11{a} libjbig0{a} libjbzip2-java{a} libjpeg62-turbo{a} libjson-c3{a} libjson-glib-1.0-0{a} libjson-glib-1.0-common{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libnettle6{a} libnspr4{a} libnss3{a} libogg0{a} libp11-kit0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libproxy1v5{a} libpulse0{a} libpython3-stdlib{a} libpython3.5-minimal{a} libpython3.5-stdlib{a} librest-0.7-0{a} librsvg2-2{a} librsvg2-common{a} libsigsegv2{a} libsm6{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libsndfile1{a} libsoup-gnome2.4-1{a} libsoup2.4-1{a} libssl1.1{a} libtasn1-6{a} libthai-data{a} libthai0{a} libtiff5{a} libtimedate-perl{a} libtool{a} libunistring0{a} libvorbis0a{a} libvorbisenc2{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1-mesa{a} libwayland-server0{a} libwrap0{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxft2{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxt6{a} libxtst6{a} libxv1{a} libxxf86dga1{a} libxxf86vm1{a} libxz-java{a} m4{a} man-db{a} mime-support{a} openjdk-8-jdk{a} openjdk-8-jdk-headless{a} openjdk-8-jre{a} openjdk-8-jre-headless{a} openssl{a} po-debconf{a} python3{a} python3-minimal{a} python3.5{a} python3.5-minimal{a} shared-mime-info{a} ucf{a} x11-common{a} x11-utils{a} xkb-data{a}
The following packages are RECOMMENDED but will NOT be installed:
ant-optional at at-spi2-core curl dbus debian-keyring default-java-plugin dput dput-ng dupload equivs fonts-dejavu-extra krb5-locales libdistro-info-perl libencode-locale-perl libgail-common libgconf-2-4 libgl1-mesa-dri libglib2.0-data libgnome-2-0 libgnomevfs2-0 libgtk-3-bin libgtk2.0-bin libltdl-dev liblwp-protocol-https-perl libmail-sendmail-perl libsoap-lite-perl liburi-perl libwww-perl libxt-dev licensecheck lintian lynx-cur openjdk-8-jre-jamvm patchutils python3-debian python3-magic strace tcpd unzip wdiff wget xdg-user-dirs xml-core
0 packages upgraded, 210 newly installed, 0 to remove and 0 not upgraded.
Need to get 117 MB of archives. After unpacking 383 MB will be used.
Abort.
E: pbuilder-satisfydepends failed.
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/26018 and its subdirectories
+ PRESULT=1
+ '[' 1 -eq 124 ']'
+ false
+ set +x
Sun Dec 18 11:00:53 UTC 2016 I: Signing ./b1/fastqc_0.11.5+dfsg-6_armhf.buildinfo as fastqc_0.11.5+dfsg-6_armhf.buildinfo.asc
gpg: can't open `./b1/fastqc_0.11.5+dfsg-6_armhf.buildinfo': No such file or directory
gpg: ./b1/fastqc_0.11.5+dfsg-6_armhf.buildinfo: clearsign failed: file open error
Sun Dec 18 11:00:53 UTC 2016 E: Could not sign /srv/reproducible-results/rbuild-debian-MOJESvdq/./b1/fastqc_0.11.5+dfsg-6_armhf.buildinfo
Sun Dec 18 11:00:53 UTC 2016 I: Signed ./b1/fastqc_0.11.5+dfsg-6_armhf.buildinfo as ./b1/fastqc_0.11.5+dfsg-6_armhf.buildinfo.asc
Sun Dec 18 11:00:53 UTC 2016 - build #1 for fastqc/unstable/armhf on cbxi4pro0 done.
Starting cleanup.
/srv/reproducible-results/rbuild-debian-967B5R68/tmp.uTVUn7QXst: All cleanup done.
Sun Dec 18 11:00:53 UTC 2016 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-VDvsWOhX, which will now be removed.
75.0% -- replaced with /srv/reproducible-results/rbuild-debian-967B5R68/tmp.uTVUn7QXst.gz
/srv/reproducible-results/rbuild-debian-MOJESvdq:
total 16
drwxr-xr-x 2 jenkins jenkins 4096 Dec 18 11:00 b1
drwxr-xr-x 2 jenkins jenkins 4096 Dec 18 10:59 b2
-rw-r--r-- 1 jenkins jenkins 2181 Dec 8 19:45 fastqc_0.11.5+dfsg-6.dsc
-rw------- 1 jenkins jenkins 3335 Dec 18 10:59 tmp.uDJNQQtx21
/srv/reproducible-results/rbuild-debian-MOJESvdq/b1:
total 16
-rw-r--r-- 1 jenkins jenkins 12908 Dec 18 11:00 build.log
/srv/reproducible-results/rbuild-debian-MOJESvdq/b2:
total 0
I: using fakeroot in build.
I: pbuilder: network access will be disabled during build
I: Current time: Sat Dec 17 22:59:36 -12 2016
I: pbuilder-time-stamp: 1482058776
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: mounting /run/shm filesystem
I: mounting /dev/pts filesystem
I: Mounting /dev/shm
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [fastqc_0.11.5+dfsg-6.dsc]
I: copying [./fastqc_0.11.5+dfsg.orig.tar.xz]
I: copying [./fastqc_0.11.5+dfsg-6.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Dec 8 07:36:58 2016 -12
gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./fastqc_0.11.5+dfsg-6.dsc
dpkg-source: info: extracting fastqc in fastqc-0.11.5+dfsg
dpkg-source: info: unpacking fastqc_0.11.5+dfsg.orig.tar.xz
dpkg-source: info: unpacking fastqc_0.11.5+dfsg-6.debian.tar.xz
dpkg-source: info: applying build_xml.patch
dpkg-source: info: applying fastqc.patch
dpkg-source: info: applying fix-help-call.patch
dpkg-source: info: applying set_configuration_path.patch
dpkg-source: info: applying adapt_to_htslib.patch
dpkg-source: info: applying drop-fast5.patch
dpkg-source: info: applying htsjdk-api.patch
I: Installing the build-deps
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint at lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 10), javahelper, default-jdk, ant, libhtsjdk-java, libjbzip2-java, libcommons-math3-java
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 18318 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper (>= 10); however:
Package debhelper is not installed.
pbuilder-satisfydepends-dummy depends on javahelper; however:
Package javahelper is not installed.
pbuilder-satisfydepends-dummy depends on default-jdk; however:
Package default-jdk is not installed.
pbuilder-satisfydepends-dummy depends on ant; however:
Package ant is not installed.
pbuilder-satisfydepends-dummy depends on libhtsjdk-java; however:
Package libhtsjdk-java is not installed.
pbuilder-satisfydepends-dummy depends on libjbzip2-java; however:
Package libjbzip2-java is not installed.
pbuilder-satisfydepends-dummy depends on libcommons-math3-java; however:
Package libcommons-math3-java is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
adwaita-icon-theme{a} ant{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} ca-certificates-java{a} dconf-gsettings-backend{a} dconf-service{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} glib-networking{a} glib-networking-common{a} glib-networking-services{a} gnome-icon-theme{a} groff-base{a} gsettings-desktop-schemas{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} javahelper{a} libapache-pom-java{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libasyncns0{a} libatk-bridge2.0-0{a} libatk-wrapper-java{a} libatk-wrapper-java-jni{a} libatk1.0-0{a} libatk1.0-data{a} libatspi2.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbsd0{a} libcairo-gobject2{a} libcairo2{a} libcap2{a} libcolord2{a} libcommons-compress-java{a} libcommons-jexl2-java{a} libcommons-logging-java{a} libcommons-math3-java{a} libcommons-parent-java{a} libcroco3{a} libcups2{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdrm2{a} libegl1-mesa{a} libepoxy0{a} libexpat1{a} libffi6{a} libfile-stripnondeterminism-perl{a} libflac8{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libgbm1{a} libgdk-pixbuf2.0-0{a} libgdk-pixbuf2.0-common{a} libgif7{a} libgl1-mesa-glx{a} libglapi-mesa{a} libglib2.0-0{a} libgnutls30{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0{a} libgtk-3-common{a} libgtk2.0-0{a} libgtk2.0-common{a} libharfbuzz0b{a} libhogweed4{a} libhtsjdk-java{ab} libice6{a} libicu57{a} libidn11{a} libjbig0{a} libjbzip2-java{a} libjpeg62-turbo{a} libjson-c3{a} libjson-glib-1.0-0{a} libjson-glib-1.0-common{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libnettle6{a} libnspr4{a} libnss3{a} libogg0{a} libp11-kit0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libproxy1v5{a} libpulse0{a} libpython3-stdlib{a} libpython3.5-minimal{a} libpython3.5-stdlib{a} librest-0.7-0{a} librsvg2-2{a} librsvg2-common{a} libsigsegv2{a} libsm6{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libsndfile1{a} libsoup-gnome2.4-1{a} libsoup2.4-1{a} libssl1.1{a} libtasn1-6{a} libthai-data{a} libthai0{a} libtiff5{a} libtimedate-perl{a} libtool{a} libunistring0{a} libvorbis0a{a} libvorbisenc2{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1-mesa{a} libwayland-server0{a} libwrap0{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxft2{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxt6{a} libxtst6{a} libxv1{a} libxxf86dga1{a} libxxf86vm1{a} libxz-java{a} m4{a} man-db{a} mime-support{a} openjdk-8-jdk{a} openjdk-8-jdk-headless{a} openjdk-8-jre{a} openjdk-8-jre-headless{a} openssl{a} po-debconf{a} python3{a} python3-minimal{a} python3.5{a} python3.5-minimal{a} shared-mime-info{a} ucf{a} x11-common{a} x11-utils{a} xkb-data{a}
The following packages are RECOMMENDED but will NOT be installed:
ant-optional at at-spi2-core curl dbus debian-keyring default-java-plugin dput dput-ng dupload equivs fonts-dejavu-extra krb5-locales libdistro-info-perl libencode-locale-perl libgail-common libgconf-2-4 libgl1-mesa-dri libglib2.0-data libgnome-2-0 libgnomevfs2-0 libgtk-3-bin libgtk2.0-bin libltdl-dev liblwp-protocol-https-perl libmail-sendmail-perl libsoap-lite-perl liburi-perl libwww-perl libxt-dev licensecheck lintian lynx-cur openjdk-8-jre-jamvm patchutils python3-debian python3-magic strace tcpd unzip wdiff wget xdg-user-dirs xml-core
0 packages upgraded, 210 newly installed, 0 to remove and 0 not upgraded.
Need to get 117 MB of archives. After unpacking 383 MB will be used.
The following packages have unmet dependencies:
libhtsjdk-java : Depends: libngs-java which is a virtual package and is not provided by any available package
Unable to resolve dependencies! Giving up...
The following NEW packages will be installed:
adwaita-icon-theme{a} ant{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} ca-certificates-java{a} dconf-gsettings-backend{a} dconf-service{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} glib-networking{a} glib-networking-common{a} glib-networking-services{a} gnome-icon-theme{a} groff-base{a} gsettings-desktop-schemas{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} javahelper{a} libapache-pom-java{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libasyncns0{a} libatk-bridge2.0-0{a} libatk-wrapper-java{a} libatk-wrapper-java-jni{a} libatk1.0-0{a} libatk1.0-data{a} libatspi2.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbsd0{a} libcairo-gobject2{a} libcairo2{a} libcap2{a} libcolord2{a} libcommons-compress-java{a} libcommons-jexl2-java{a} libcommons-logging-java{a} libcommons-math3-java{a} libcommons-parent-java{a} libcroco3{a} libcups2{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdrm2{a} libegl1-mesa{a} libepoxy0{a} libexpat1{a} libffi6{a} libfile-stripnondeterminism-perl{a} libflac8{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libgbm1{a} libgdk-pixbuf2.0-0{a} libgdk-pixbuf2.0-common{a} libgif7{a} libgl1-mesa-glx{a} libglapi-mesa{a} libglib2.0-0{a} libgnutls30{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0{a} libgtk-3-common{a} libgtk2.0-0{a} libgtk2.0-common{a} libharfbuzz0b{a} libhogweed4{a} libhtsjdk-java{ab} libice6{a} libicu57{a} libidn11{a} libjbig0{a} libjbzip2-java{a} libjpeg62-turbo{a} libjson-c3{a} libjson-glib-1.0-0{a} libjson-glib-1.0-common{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libnettle6{a} libnspr4{a} libnss3{a} libogg0{a} libp11-kit0{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libproxy1v5{a} libpulse0{a} libpython3-stdlib{a} libpython3.5-minimal{a} libpython3.5-stdlib{a} librest-0.7-0{a} librsvg2-2{a} librsvg2-common{a} libsigsegv2{a} libsm6{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libsndfile1{a} libsoup-gnome2.4-1{a} libsoup2.4-1{a} libssl1.1{a} libtasn1-6{a} libthai-data{a} libthai0{a} libtiff5{a} libtimedate-perl{a} libtool{a} libunistring0{a} libvorbis0a{a} libvorbisenc2{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1-mesa{a} libwayland-server0{a} libwrap0{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxft2{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxt6{a} libxtst6{a} libxv1{a} libxxf86dga1{a} libxxf86vm1{a} libxz-java{a} m4{a} man-db{a} mime-support{a} openjdk-8-jdk{a} openjdk-8-jdk-headless{a} openjdk-8-jre{a} openjdk-8-jre-headless{a} openssl{a} po-debconf{a} python3{a} python3-minimal{a} python3.5{a} python3.5-minimal{a} shared-mime-info{a} ucf{a} x11-common{a} x11-utils{a} xkb-data{a}
The following packages are RECOMMENDED but will NOT be installed:
ant-optional at at-spi2-core curl dbus debian-keyring default-java-plugin dput dput-ng dupload equivs fonts-dejavu-extra krb5-locales libdistro-info-perl libencode-locale-perl libgail-common libgconf-2-4 libgl1-mesa-dri libglib2.0-data libgnome-2-0 libgnomevfs2-0 libgtk-3-bin libgtk2.0-bin libltdl-dev liblwp-protocol-https-perl libmail-sendmail-perl libsoap-lite-perl liburi-perl libwww-perl libxt-dev licensecheck lintian lynx-cur openjdk-8-jre-jamvm patchutils python3-debian python3-magic strace tcpd unzip wdiff wget xdg-user-dirs xml-core
0 packages upgraded, 210 newly installed, 0 to remove and 0 not upgraded.
Need to get 117 MB of archives. After unpacking 383 MB will be used.
Abort.
E: pbuilder-satisfydepends failed.
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/26018 and its subdirectories
removed ‘/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/armhf/fastqc_0.11.5+dfsg-6.rbuild.log.gz’
removed ‘/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/fastqc_0.11.5+dfsg-6.build1.log.gz’
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 76.0%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/fastqc_0.11.5+dfsg-6.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-MOJESvdq/tmp.uDJNQQtx21
+ mv /srv/reproducible-results/rbuild-debian-MOJESvdq/tmp.uDJNQQtx21 /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/armhf/fastqc_0.11.5+dfsg-6.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/armhf/fastqc_0.11.5+dfsg-6.rbuild.log
+ '[' 1 -eq 1 ']'
+ handle_ftbfs
+ false
+ set +x
fastqc failed to build from source.
E: pbuilder-satisfydepends failed.
Sun Dec 18 11:01:24 UTC 2016 W: Downloading the build dependencies failed
Sun Dec 18 11:01:24 UTC 2016 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case.
Sun Dec 18 11:01:24 UTC 2016 W: Network problems are automatically rescheduled after some hours.
Error: database is locked
Error: database is locked
Starting cleanup.
/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/armhf/fastqc_0.11.5+dfsg-6.rbuild.log: 70.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/armhf/fastqc_0.11.5+dfsg-6.rbuild.log.gz
INFO: Starting at 2016-12-18 11:03:46.059218
CRITICAL: SQLite database locked, could not execute query:
CRITICAL: "SELECT r.status, r.version, r.build_date
CRITICAL: FROM results AS r JOIN sources AS s
CRITICAL: ON r.package_id=s.id WHERE s.name='fastqc'
CRITICAL: AND s.architecture='amd64' AND s.suite='unstable'"
CRITICAL: Exiting script.
INFO: Finished at 2016-12-18 11:05:46.039687, took: 0:01:59.980537
Warning: cannot update html pages for fastqc
All cleanup done.
Sun 18 Dec 11:05:46 UTC 2016 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-VC6WsNon, which will now be removed.
Build step 'Execute shell' marked build as failure
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