[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_armhf_8 #15087
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Sun Dec 25 11:59:11 UTC 2016
https://jenkins.debian.net/job/reproducible_builder_armhf_8/15087/------------------------------------------
[...truncated 21261 lines...]
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0,
from /build/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53,
from /build/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45,
from /build/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36,
from /build/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40,
from /build/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36,
from /build/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37,
from /build/ncbi-blast+-2.5.0/c++/src/objtools/readers/gvf_reader.cpp:44:
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function 'unsigned int bm::gap_test(const T*, unsigned int)':
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
else
^~~~
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'else'
return ((*buf) & 1) ^ ((--start) & 1);
^~~~~~
.0/c++/src/objmgr/priority.cpp -o priority.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-2.5.0=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-2.5.0/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-2.5.0=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-2.5.0/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-2.5.0=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-2.5.0/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-2.5.0=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-2.5.0/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-2.5.0=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-2.5.0/c++/src/objmgr/scope.cpp -o scope.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-2.5.0=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-2.5.0/c++/src/objmgr/heap_scope.cpp -o heap_scope.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-2.5.0=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-2.5.0/c++/src/objmgr/scope_impl.cpp -o scope_impl.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-2.5.0=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -WdIn file included from /build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0,
from /build/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-2.5.0/c++/include/objmgr/impl/scope_info.hpp:36,
from /build/ncbi-blast+-2.5.0/c++/src/objmgr/scope_info.cpp:35:
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0,
from /build/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53,
from /build/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45,
from /build/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /build/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42,
from /build/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37,
from /build/ncbi-blast+-2.5.0/c++/include/objmgr/impl/scope_info.hpp:39,
from /build/ncbi-blast+-2.5.0/c++/src/objmgr/scope_info.cpp:35:
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function 'unsigned int bm::gap_test(const T*, unsigned int)':
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
else
^~~~
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'else'
return ((*buf) & 1) ^ ((--start) & 1);
^~~~~~
In file included from /build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0,
from /build/ncbi-blast+-2.5.0/c++/src/objtools/readers/vcf_reader.cpp:34:
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0,
from /build/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53,
from /build/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45,
from /build/ncbi-blast+-2.5.0/c++/include/serial/impl/stdtypes.hpp:36,
from /build/ncbi-blast+-2.5.0/c++/include/serial/objectinfo.hpp:40,
from /build/ncbi-blast+-2.5.0/c++/include/serial/impl/objecttype.hpp:36,
from /build/ncbi-blast+-2.5.0/c++/include/serial/iterator.hpp:37,
from /build/ncbi-blast+-2.5.0/c++/src/objtools/readers/vcf_reader.cpp:44:
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function 'unsigned int bm::gap_test(const T*, unsigned int)':
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
else
^~~~
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'else'
return ((*buf) & 1) ^ ((--start) & 1);
^~~~~~
In file included from /build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0,
from /build/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-2.5.0/c++/src/objtools/readers/best_feat_finder.hpp:37,
from /build/ncbi-blast+-2.5.0/c++/src/objtools/readers/best_feat_finder.cpp:35:
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0,
from /build/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-2.5.0/c++/include/objmgr/tse_handle.hpp:37,
from /build/ncbi-blast+-2.5.0/c++/src/objmgr/tse_handle.cpp:34:
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0,
from /build/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53,
from /build/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45,
from /build/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/Seq_feat_.hpp:43,
from /build/ncbi-blast+-2.5.0/c++/include/objects/seqfeat/Seq_feat.hpp:42,
from /build/ncbi-blast+-2.5.0/c++/src/objtools/readers/best_feat_finder.cpp:37:
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function 'unsigned int bm::gap_test(const T*, unsigned int)':
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
else
^~~~
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'else'
return ((*buf) & 1) ^ ((--start) & 1);
^~~~~~
In file included from /build/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0,
from /build/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53,
from /build/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45,
from /build/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /build/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42,
from /build/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37,
from /build/ncbi-blast+-2.5.0/c++/include/objmgr/tse_handle.hpp:40,
from /build/ncbi-blast+-2.5.0/c++/src/objmgr/tse_handle.cpp:34:
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function 'unsigned int bm::gap_test(const T*, unsigned int)':
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
else
^~~~
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'else'
return ((*buf) & 1) ^ ((--start) & 1);
^~~~~~
e-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-2.5.0=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-2.5.0=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-2.5.0/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-2.5.0=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-2.5.0=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-2.5.0/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-2.5.0=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-2.5.0/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-2.5.0=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-2.5.0/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-2.5.0=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.5.0/c++/BUILD/inc -I/build/ncbi-blast+-2.5.0/c++/include /build/ncbi-blast+-2.5.0/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-In file included from /build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0,
from /build/ncbi-blast+-2.5.0/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-2.5.0/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-2.5.0/c++/include/corelib/ncbi_autoinit.hpp:46,
from /build/ncbi-blast+-2.5.0/c++/include/objtools/readers/source_mod_parser.hpp:36,
from /build/ncbi-blast+-2.5.0/c++/src/objtools/readers/source_mod_parser.cpp:38:
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0,
from /build/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53,
from /build/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45,
from /build/ncbi-blast+-2.5.0/c++/include/objects/general/User_object_.hpp:43,
from /build/ncbi-blast+-2.5.0/c++/include/objects/general/User_object.hpp:42,
from /build/ncbi-blast+-2.5.0/c++/include/objtools/readers/source_mod_parser.hpp:38,
from /build/ncbi-blast+-2.5.0/c++/src/objtools/readers/source_mod_parser.cpp:38:
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function 'unsigned int bm::gap_test(const T*, unsigned int)':
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
else
^~~~
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'else'
return ((*buf) & 1) ^ ((--start) & 1);
^~~~~~
In file included from /build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistd.hpp:37:0,
from /build/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:35,
from /build/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /build/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42,
from /build/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37,
from /build/ncbi-blast+-2.5.0/c++/include/objmgr/seq_map.hpp:41,
from /build/ncbi-blast+-2.5.0/c++/src/objmgr/seq_map.cpp:36:
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4550:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-2.5.0/c++/include/corelib/ncbistr.hpp:4577:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-2.5.0/c++/include/util/bitset/bm.h:68:0,
from /build/ncbi-blast+-2.5.0/c++/include/util/bitset/ncbi_bitset.hpp:53,
from /build/ncbi-blast+-2.5.0/c++/include/serial/serialbase.hpp:45,
from /build/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id_.hpp:43,
from /build/ncbi-blast+-2.5.0/c++/include/objects/seqloc/Seq_id.hpp:42,
from /build/ncbi-blast+-2.5.0/c++/include/objects/seq/seq_id_handle.hpp:37,
from /build/ncbi-blast+-2.5.0/c++/include/objmgr/seq_map.hpp:41,
from /build/ncbi-blast+-2.5.0/c++/src/objmgr/seq_map.cpp:36:
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h: In function 'unsigned int bm::gap_test(const T*, unsigned int)':
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
else
^~~~
/build/ncbi-blast+-2.5.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'else'
return ((*buf) & 1) ^ ((--start) & 1);
^~~~~~
Starting cleanup.
FATAL: null
java.lang.NullPointerException
at hudson.plugins.build_timeout.BuildTimeoutWrapper$EnvironmentImpl.tearDown(BuildTimeoutWrapper.java:199)
at hudson.model.Build$BuildExecution.doRun(Build.java:173)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:534)
at hudson.model.Run.execute(Run.java:1720)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:98)
at hudson.model.Executor.run(Executor.java:404)
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