[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_19 #8115

jenkins at jenkins.debian.net jenkins at jenkins.debian.net
Fri Jan 6 03:18:54 UTC 2017


https://jenkins.debian.net/job/reproducible_builder_amd64_19/8115/------------------------------------------
[...truncated 204.56 KB...]
-		 R CMD INSTALL -l /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library 	\
+		 R CMD INSTALL -l /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library 	\
 				--clean  .  \
 				"--built-timestamp=\"Fri, 29 Jul 2016 17:10:00 +0200\""   	        \
 				;                               \
@@ -812,7 +829,7 @@
 * installing *source* package 'tgp' ...
 ** package 'tgp' successfully unpacked and MD5 sums checked
 ** libs
-make[1]: Entering directory '/build/1st/r-cran-tgp-2.4-14/src'
+make[1]: Entering directory '/build/r-cran-tgp-2.4-14/2nd/src'
 gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG     -DRPRINT -DNDEBUG  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c all_draws.c -o all_draws.o
 g++ -I/usr/share/R/include -DNDEBUG     -DRPRINT -DNDEBUG  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c base.cc -o base.o
 g++ -I/usr/share/R/include -DNDEBUG     -DRPRINT -DNDEBUG  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c corr.cc -o corr.o
@@ -842,10 +859,10 @@
 g++ -I/usr/share/R/include -DNDEBUG     -DRPRINT -DNDEBUG  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c tgp.cc -o tgp.o
 g++ -I/usr/share/R/include -DNDEBUG     -DRPRINT -DNDEBUG  -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c tree.cc -o tree.o
 g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o tgp.so all_draws.o base.o corr.o dopt.o exp.o exp_sep.o gen_covar.o gp.o lh.o lik_post.o linalg.o list.o matern.o matrix.o model.o mr_exp_sep.o mstructs.o params.o predict.o predict_linear.o rand_draws.o rand_pdf.o randomkit.o rhelp.o sim.o temper.o tgp.o tree.o -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
-make[1]: Leaving directory '/build/1st/r-cran-tgp-2.4-14/src'
-make[1]: Entering directory '/build/1st/r-cran-tgp-2.4-14/src'
-make[1]: Leaving directory '/build/1st/r-cran-tgp-2.4-14/src'
-installing to /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/tgp/libs
+make[1]: Leaving directory '/build/r-cran-tgp-2.4-14/2nd/src'
+make[1]: Entering directory '/build/r-cran-tgp-2.4-14/2nd/src'
+make[1]: Leaving directory '/build/r-cran-tgp-2.4-14/2nd/src'
+installing to /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/tgp/libs
 ** R
 ** data
 ** demo
@@ -857,14 +874,14 @@
 ** installing vignettes
 ** testing if installed package can be loaded
 * DONE (tgp)
-rm -vf /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/R.css 			\
-		/build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/tgp/COPYING 	\
-		/build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/tgp/LICENSE.txt	\
-		/build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/tgp/LICENSE
+rm -vf /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/R.css 			\
+		/build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/tgp/COPYING 	\
+		/build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/tgp/LICENSE.txt	\
+		/build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/tgp/LICENSE
 if test -f debian/overrides; then 		\
-		install -d /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/share/lintian/overrides ; 		\
+		install -d /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/share/lintian/overrides ; 		\
 		install -m 0644 debian/overrides 	\
-			/build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/share/lintian/overrides/r-cran-tgp; 	\
+			/build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/share/lintian/overrides/r-cran-tgp; 	\
 	fi
 Adding cdbs dependencies to debian/r-cran-tgp.substvars
 dh_installdirs -pr-cran-tgp \
@@ -900,8 +917,8 @@
 dh_installdeb -pr-cran-tgp 
 dh_perl -pr-cran-tgp 
 dh_shlibdeps -pr-cran-tgp 
-dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-tgp/usr/lib/R/site-library/tgp/libs/tgp.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
 dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-tgp/usr/lib/R/site-library/tgp/libs/tgp.so was not linked against libquadmath.so.0 (it uses none of the library's symbols)
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-tgp/usr/lib/R/site-library/tgp/libs/tgp.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
 dh_gencontrol -pr-cran-tgp  
 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
@@ -913,15 +930,17 @@
 dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
  dpkg-genchanges --build=binary >../r-cran-tgp_2.4-14-2_amd64.changes
 dpkg-genchanges: info: binary-only upload (no source code included)
- dpkg-source --after-build r-cran-tgp-2.4-14
+ dpkg-source --after-build 2nd
 dpkg-buildpackage: info: binary-only upload (no source included)
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/17933/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/17933/tmp/hooks/B01_cleanup finished
 I: unmounting /dev/shm filesystem
 I: unmounting dev/pts filesystem
 I: unmounting run/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/351 and its subdirectories
-I: Current time: Thu Jan  5 15:16:39 -12 2017
-I: pbuilder-time-stamp: 1483672599
+I: removing directory /srv/workspace/pbuilder/17933 and its subdirectories
+I: Current time: Thu Feb  8 23:41:25 +14 2018
+I: pbuilder-time-stamp: 1518082885

Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/r-cran-tgp_2.4-14-2.diff:	 71.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/r-cran-tgp_2.4-14-2.diff.gz
b2/build.log:	 82.2%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log:	 82.6%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/r-cran-tgp_2.4-14-2.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-FJFrhIvd/tmp.RPBt2quchn
+ mv /srv/reproducible-results/rbuild-debian-FJFrhIvd/tmp.RPBt2quchn /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ filter_changes_files
+ sed -i -e '/^ [a-f0-9]\{32,64\} .*\.buildinfo$/d' b1/r-cran-tgp_2.4-14-2_amd64.changes b2/r-cran-tgp_2.4-14-2_amd64.changes
+ call_diffoscope_on_changes_files
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-FJFrhIvd
+ local TMPLOG=/srv/reproducible-results/rbuild-debian-FJFrhIvd/tmp.6uHNy9ei2h
+ local TIMEOUT=120m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-FJFrhIvd -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/rbuild-debian-FJFrhIvd/dbd-tmp-aHFzlwR
++ schroot --directory /srv/reproducible-results/rbuild-debian-FJFrhIvd -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 67'
++ echo diffoscope 67
++ grep '^E: 15binfmt: update-binfmts: unable to open'
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ log_info 'diffoscope 67 will be used to compare the two builds:'
+ _log I: 'diffoscope 67 will be used to compare the two builds:'
+ local prefix=I:
+ shift 1
+ tee -a /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log
++ date -u
+ echo -e 'Fri Jan  6 03:18:24 UTC 2017  I: diffoscope 67 will be used to compare the two builds:'
Fri Jan  6 03:18:24 UTC 2017  I: diffoscope 67 will be used to compare the two builds:
+ set +e
+ set -x
+ timeout 120m nice schroot --directory /srv/reproducible-results/rbuild-debian-FJFrhIvd -c source:jenkins-reproducible-unstable-diffoscope -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian-FJFrhIvd/dbd-tmp-aHFzlwR ; diffoscope 			--html /srv/reproducible-results/rbuild-debian-FJFrhIvd/r-cran-tgp_2.4-14-2.diffoscope.html 			--text /srv/reproducible-results/rbuild-debian-FJFrhIvd/r-cran-tgp_2.4-14-2.diffoscope.txt 			--profile=- 			/srv/reproducible-results/rbuild-debian-FJFrhIvd/b1/r-cran-tgp_2.4-14-2_amd64.changes 			/srv/reproducible-results/rbuild-debian-FJFrhIvd/b2/r-cran-tgp_2.4-14-2_amd64.changes'
+ RESULT=1
++ grep '^E: 15binfmt: update-binfmts: unable to open' /srv/reproducible-results/rbuild-debian-FJFrhIvd/tmp.6uHNy9ei2h
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ false
+ set +x
Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian-FJFrhIvd/r-cran-tgp_2.4-14-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian-FJFrhIvd/r-cran-tgp_2.4-14-2.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-FJFrhIvd/b1/r-cran-tgp_2.4-14-2_amd64.changes /srv/reproducible-results/rbuild-debian-FJFrhIvd/b2/r-cran-tgp_2.4-14-2_amd64.changes
========================================================================================================================================================================================================================================================================================================================================================================================================================

close_archive (total time: 0.001s)
----------------------------------

       0.000s    18 calls    diffoscope.comparators.gzip.GzipContainer
       0.000s    12 calls    diffoscope.comparators.tar.TarContainer
       0.000s     6 calls    diffoscope.comparators.xz.XzContainer
       0.000s     8 calls    diffoscope.comparators.deb.DebContainer
       0.000s     6 calls    diffoscope.comparators.deb.DebTarContainer

command (total time: 13.442s)
-----------------------------

       6.893s   934 calls    readelf
       2.769s   110 calls    objdump
       2.231s   127 calls    diff
       0.553s     6 calls    xz
       0.531s     2 calls    objcopy
       0.206s    18 calls    gzip
       0.135s    50 calls    xxd
       0.123s    14 calls    cmp
       0.002s    14 calls    cmp (internal)

compare_files (cumulative) (total time: 83.101s)
------------------------------------------------

      16.099s     1 call     abc.DotChangesFile
      15.944s     2 calls    abc.DebFile
      15.586s     2 calls    abc.XzFile
      15.076s     2 calls    abc.DebDataTarFile
      14.063s     2 calls    abc.ElfFile
       3.645s    10 calls    diffoscope.comparators.elf.ElfCodeSection
       1.466s    37 calls    diffoscope.comparators.elf.ElfSection
       0.439s     5 calls    abc.GzipFile
       0.333s     2 calls    diffoscope.comparators.utils.libarchive.LibarchiveMember
       0.122s     2 calls    abc.TarFile
       0.120s     2 calls    diffoscope.comparators.elf.ElfStringSection
       0.107s     3 calls    diffoscope.comparators.utils.archive.ArchiveMember
       0.042s     1 call     diffoscope.comparators.elf.MonkeyPatchedElfSection
       0.034s     1 call     abc.TextFile
       0.025s     2 calls    abc.Md5sumsFile
       0.000s    26 calls    diffoscope.comparators.utils.libarchive.LibarchiveDirectory

container_extract (total time: 0.976s)
--------------------------------------

       0.554s     6 calls    diffoscope.comparators.xz.XzContainer
       0.208s    18 calls    diffoscope.comparators.gzip.GzipContainer
       0.104s    16 calls    diffoscope.comparators.deb.DebTarContainer
       0.097s    22 calls    diffoscope.comparators.deb.DebContainer
       0.013s    16 calls    diffoscope.comparators.tar.TarContainer

has_same_content_as (total time: 0.870s)
----------------------------------------

       0.615s     7 calls    diffoscope.comparators.utils.archive.ArchiveMember
       0.238s    17 calls    diffoscope.comparators.utils.libarchive.LibarchiveMember
       0.014s     2 calls    diffoscope.comparators.debian.DebControlMember
       0.001s     1 call     diffoscope.comparators.utils.libarchive.LibarchiveSymlink
       0.001s    37 calls    diffoscope.comparators.elf.ElfSection
       0.000s    26 calls    diffoscope.comparators.utils.libarchive.LibarchiveDirectory
       0.000s    10 calls    diffoscope.comparators.elf.ElfCodeSection
       0.000s     1 call     abc.DotChangesFile
       0.000s     2 calls    diffoscope.comparators.elf.ElfStringSection
       0.000s     1 call     diffoscope.comparators.elf.MonkeyPatchedElfSection

main (total time: 28.134s)
--------------------------

      28.109s     2 calls    outputs
       0.022s     1 call     cleanup
       0.003s     1 call     parse_args

open_archive (total time: 0.001s)
---------------------------------

       0.000s    18 calls    diffoscope.comparators.gzip.GzipContainer
       0.000s    12 calls    diffoscope.comparators.tar.TarContainer
       0.000s     8 calls    diffoscope.comparators.deb.DebContainer
       0.000s     6 calls    diffoscope.comparators.deb.DebTarContainer
       0.000s     6 calls    diffoscope.comparators.xz.XzContainer

output (total time: 11.985s)
----------------------------

      11.851s     1 call     html
       0.134s     1 call     text

recognizes (total time: 0.485s)
-------------------------------

       0.241s  1188 calls    diffoscope.comparators.utils.libarchive.LibarchiveMember
       0.134s   822 calls    diffoscope.comparators.utils.archive.ArchiveMember
       0.048s   128 calls    diffoscope.comparators.debian.DebControlMember
       0.024s    10 calls    abc.DotChangesFile
       0.014s   666 calls    diffoscope.comparators.elf.ElfSection
       0.004s   180 calls    diffoscope.comparators.elf.ElfCodeSection
       0.003s    12 calls    abc.TarFile
       0.003s    18 calls    abc.GzipFile
       0.002s    18 calls    diffoscope.comparators.elf.MonkeyPatchedElfSection
       0.002s     8 calls    abc.Md5sumsFile
       0.002s     8 calls    abc.DebFile
       0.002s     6 calls    abc.ElfFile
       0.002s     6 calls    abc.DebDataTarFile
       0.002s    36 calls    diffoscope.comparators.elf.ElfStringSection
       0.001s     6 calls    abc.XzFile
       0.001s     6 calls    abc.TextFile
       0.000s     8 calls    diffoscope.comparators.binary.FilesystemFile
tee: /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log: No space left on device
Starting cleanup.
/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log:	
gzip: /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log.gz: No space left on device
Fri  6 Jan 03:18:54 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-x4UFrV3h, which will now be removed.
Build step 'Execute shell' marked build as failure



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