[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_19 #8115
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Fri Jan 6 03:18:54 UTC 2017
https://jenkins.debian.net/job/reproducible_builder_amd64_19/8115/------------------------------------------
[...truncated 204.56 KB...]
- R CMD INSTALL -l /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library \
--clean . \
"--built-timestamp=\"Fri, 29 Jul 2016 17:10:00 +0200\"" \
; \
@@ -812,7 +829,7 @@
* installing *source* package 'tgp' ...
** package 'tgp' successfully unpacked and MD5 sums checked
** libs
-make[1]: Entering directory '/build/1st/r-cran-tgp-2.4-14/src'
+make[1]: Entering directory '/build/r-cran-tgp-2.4-14/2nd/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DRPRINT -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c all_draws.c -o all_draws.o
g++ -I/usr/share/R/include -DNDEBUG -DRPRINT -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base.cc -o base.o
g++ -I/usr/share/R/include -DNDEBUG -DRPRINT -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c corr.cc -o corr.o
@@ -842,10 +859,10 @@
g++ -I/usr/share/R/include -DNDEBUG -DRPRINT -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tgp.cc -o tgp.o
g++ -I/usr/share/R/include -DNDEBUG -DRPRINT -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tree.cc -o tree.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o tgp.so all_draws.o base.o corr.o dopt.o exp.o exp_sep.o gen_covar.o gp.o lh.o lik_post.o linalg.o list.o matern.o matrix.o model.o mr_exp_sep.o mstructs.o params.o predict.o predict_linear.o rand_draws.o rand_pdf.o randomkit.o rhelp.o sim.o temper.o tgp.o tree.o -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
-make[1]: Leaving directory '/build/1st/r-cran-tgp-2.4-14/src'
-make[1]: Entering directory '/build/1st/r-cran-tgp-2.4-14/src'
-make[1]: Leaving directory '/build/1st/r-cran-tgp-2.4-14/src'
-installing to /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/tgp/libs
+make[1]: Leaving directory '/build/r-cran-tgp-2.4-14/2nd/src'
+make[1]: Entering directory '/build/r-cran-tgp-2.4-14/2nd/src'
+make[1]: Leaving directory '/build/r-cran-tgp-2.4-14/2nd/src'
+installing to /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/tgp/libs
** R
** data
** demo
@@ -857,14 +874,14 @@
** installing vignettes
** testing if installed package can be loaded
* DONE (tgp)
-rm -vf /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/R.css \
- /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/tgp/COPYING \
- /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/tgp/LICENSE.txt \
- /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/tgp/LICENSE
+rm -vf /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/R.css \
+ /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/tgp/COPYING \
+ /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/tgp/LICENSE.txt \
+ /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/tgp/LICENSE
if test -f debian/overrides; then \
- install -d /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/share/lintian/overrides ; \
+ install -d /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/share/lintian/overrides/r-cran-tgp; \
+ /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/share/lintian/overrides/r-cran-tgp; \
fi
Adding cdbs dependencies to debian/r-cran-tgp.substvars
dh_installdirs -pr-cran-tgp \
@@ -900,8 +917,8 @@
dh_installdeb -pr-cran-tgp
dh_perl -pr-cran-tgp
dh_shlibdeps -pr-cran-tgp
-dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-tgp/usr/lib/R/site-library/tgp/libs/tgp.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-tgp/usr/lib/R/site-library/tgp/libs/tgp.so was not linked against libquadmath.so.0 (it uses none of the library's symbols)
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-tgp/usr/lib/R/site-library/tgp/libs/tgp.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
dh_gencontrol -pr-cran-tgp
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
@@ -913,15 +930,17 @@
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=binary >../r-cran-tgp_2.4-14-2_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
- dpkg-source --after-build r-cran-tgp-2.4-14
+ dpkg-source --after-build 2nd
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/17933/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/17933/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/351 and its subdirectories
-I: Current time: Thu Jan 5 15:16:39 -12 2017
-I: pbuilder-time-stamp: 1483672599
+I: removing directory /srv/workspace/pbuilder/17933 and its subdirectories
+I: Current time: Thu Feb 8 23:41:25 +14 2018
+I: pbuilder-time-stamp: 1518082885
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/r-cran-tgp_2.4-14-2.diff: 71.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/r-cran-tgp_2.4-14-2.diff.gz
b2/build.log: 82.2%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 82.6%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/r-cran-tgp_2.4-14-2.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-FJFrhIvd/tmp.RPBt2quchn
+ mv /srv/reproducible-results/rbuild-debian-FJFrhIvd/tmp.RPBt2quchn /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ filter_changes_files
+ sed -i -e '/^ [a-f0-9]\{32,64\} .*\.buildinfo$/d' b1/r-cran-tgp_2.4-14-2_amd64.changes b2/r-cran-tgp_2.4-14-2_amd64.changes
+ call_diffoscope_on_changes_files
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-FJFrhIvd
+ local TMPLOG=/srv/reproducible-results/rbuild-debian-FJFrhIvd/tmp.6uHNy9ei2h
+ local TIMEOUT=120m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-FJFrhIvd -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/rbuild-debian-FJFrhIvd/dbd-tmp-aHFzlwR
++ schroot --directory /srv/reproducible-results/rbuild-debian-FJFrhIvd -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 67'
++ echo diffoscope 67
++ grep '^E: 15binfmt: update-binfmts: unable to open'
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ log_info 'diffoscope 67 will be used to compare the two builds:'
+ _log I: 'diffoscope 67 will be used to compare the two builds:'
+ local prefix=I:
+ shift 1
+ tee -a /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log
++ date -u
+ echo -e 'Fri Jan 6 03:18:24 UTC 2017 I: diffoscope 67 will be used to compare the two builds:'
Fri Jan 6 03:18:24 UTC 2017 I: diffoscope 67 will be used to compare the two builds:
+ set +e
+ set -x
+ timeout 120m nice schroot --directory /srv/reproducible-results/rbuild-debian-FJFrhIvd -c source:jenkins-reproducible-unstable-diffoscope -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian-FJFrhIvd/dbd-tmp-aHFzlwR ; diffoscope --html /srv/reproducible-results/rbuild-debian-FJFrhIvd/r-cran-tgp_2.4-14-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian-FJFrhIvd/r-cran-tgp_2.4-14-2.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-FJFrhIvd/b1/r-cran-tgp_2.4-14-2_amd64.changes /srv/reproducible-results/rbuild-debian-FJFrhIvd/b2/r-cran-tgp_2.4-14-2_amd64.changes'
+ RESULT=1
++ grep '^E: 15binfmt: update-binfmts: unable to open' /srv/reproducible-results/rbuild-debian-FJFrhIvd/tmp.6uHNy9ei2h
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ false
+ set +x
Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian-FJFrhIvd/r-cran-tgp_2.4-14-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian-FJFrhIvd/r-cran-tgp_2.4-14-2.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-FJFrhIvd/b1/r-cran-tgp_2.4-14-2_amd64.changes /srv/reproducible-results/rbuild-debian-FJFrhIvd/b2/r-cran-tgp_2.4-14-2_amd64.changes
========================================================================================================================================================================================================================================================================================================================================================================================================================
close_archive (total time: 0.001s)
----------------------------------
0.000s 18 calls diffoscope.comparators.gzip.GzipContainer
0.000s 12 calls diffoscope.comparators.tar.TarContainer
0.000s 6 calls diffoscope.comparators.xz.XzContainer
0.000s 8 calls diffoscope.comparators.deb.DebContainer
0.000s 6 calls diffoscope.comparators.deb.DebTarContainer
command (total time: 13.442s)
-----------------------------
6.893s 934 calls readelf
2.769s 110 calls objdump
2.231s 127 calls diff
0.553s 6 calls xz
0.531s 2 calls objcopy
0.206s 18 calls gzip
0.135s 50 calls xxd
0.123s 14 calls cmp
0.002s 14 calls cmp (internal)
compare_files (cumulative) (total time: 83.101s)
------------------------------------------------
16.099s 1 call abc.DotChangesFile
15.944s 2 calls abc.DebFile
15.586s 2 calls abc.XzFile
15.076s 2 calls abc.DebDataTarFile
14.063s 2 calls abc.ElfFile
3.645s 10 calls diffoscope.comparators.elf.ElfCodeSection
1.466s 37 calls diffoscope.comparators.elf.ElfSection
0.439s 5 calls abc.GzipFile
0.333s 2 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.122s 2 calls abc.TarFile
0.120s 2 calls diffoscope.comparators.elf.ElfStringSection
0.107s 3 calls diffoscope.comparators.utils.archive.ArchiveMember
0.042s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection
0.034s 1 call abc.TextFile
0.025s 2 calls abc.Md5sumsFile
0.000s 26 calls diffoscope.comparators.utils.libarchive.LibarchiveDirectory
container_extract (total time: 0.976s)
--------------------------------------
0.554s 6 calls diffoscope.comparators.xz.XzContainer
0.208s 18 calls diffoscope.comparators.gzip.GzipContainer
0.104s 16 calls diffoscope.comparators.deb.DebTarContainer
0.097s 22 calls diffoscope.comparators.deb.DebContainer
0.013s 16 calls diffoscope.comparators.tar.TarContainer
has_same_content_as (total time: 0.870s)
----------------------------------------
0.615s 7 calls diffoscope.comparators.utils.archive.ArchiveMember
0.238s 17 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.014s 2 calls diffoscope.comparators.debian.DebControlMember
0.001s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink
0.001s 37 calls diffoscope.comparators.elf.ElfSection
0.000s 26 calls diffoscope.comparators.utils.libarchive.LibarchiveDirectory
0.000s 10 calls diffoscope.comparators.elf.ElfCodeSection
0.000s 1 call abc.DotChangesFile
0.000s 2 calls diffoscope.comparators.elf.ElfStringSection
0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection
main (total time: 28.134s)
--------------------------
28.109s 2 calls outputs
0.022s 1 call cleanup
0.003s 1 call parse_args
open_archive (total time: 0.001s)
---------------------------------
0.000s 18 calls diffoscope.comparators.gzip.GzipContainer
0.000s 12 calls diffoscope.comparators.tar.TarContainer
0.000s 8 calls diffoscope.comparators.deb.DebContainer
0.000s 6 calls diffoscope.comparators.deb.DebTarContainer
0.000s 6 calls diffoscope.comparators.xz.XzContainer
output (total time: 11.985s)
----------------------------
11.851s 1 call html
0.134s 1 call text
recognizes (total time: 0.485s)
-------------------------------
0.241s 1188 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.134s 822 calls diffoscope.comparators.utils.archive.ArchiveMember
0.048s 128 calls diffoscope.comparators.debian.DebControlMember
0.024s 10 calls abc.DotChangesFile
0.014s 666 calls diffoscope.comparators.elf.ElfSection
0.004s 180 calls diffoscope.comparators.elf.ElfCodeSection
0.003s 12 calls abc.TarFile
0.003s 18 calls abc.GzipFile
0.002s 18 calls diffoscope.comparators.elf.MonkeyPatchedElfSection
0.002s 8 calls abc.Md5sumsFile
0.002s 8 calls abc.DebFile
0.002s 6 calls abc.ElfFile
0.002s 6 calls abc.DebDataTarFile
0.002s 36 calls diffoscope.comparators.elf.ElfStringSection
0.001s 6 calls abc.XzFile
0.001s 6 calls abc.TextFile
0.000s 8 calls diffoscope.comparators.binary.FilesystemFile
tee: /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log: No space left on device
Starting cleanup.
/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log:
gzip: /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log.gz: No space left on device
Fri 6 Jan 03:18:54 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-x4UFrV3h, which will now be removed.
Build step 'Execute shell' marked build as failure
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