[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_1 #62665
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Fri Jan 6 03:42:59 UTC 2017
https://jenkins.debian.net/job/reproducible_builder_amd64_1/62665/------------------------------------------
[...truncated 204.08 KB...]
@@ -799,12 +816,12 @@
echo "R:Depends=r-base-core (>= 3.3.2-1), r-api-3" >> debian/r-cran-tgp.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library --clean \
. \
"--built-timestamp=\"Fri, 29 Jul 2016 17:10:00 +0200\"" \
; \
else \
- R CMD INSTALL -l /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library \
--clean . \
"--built-timestamp=\"Fri, 29 Jul 2016 17:10:00 +0200\"" \
; \
@@ -812,7 +829,7 @@
* installing *source* package 'tgp' ...
** package 'tgp' successfully unpacked and MD5 sums checked
** libs
-make[1]: Entering directory '/build/1st/r-cran-tgp-2.4-14/src'
+make[1]: Entering directory '/build/r-cran-tgp-2.4-14/2nd/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DRPRINT -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c all_draws.c -o all_draws.o
g++ -I/usr/share/R/include -DNDEBUG -DRPRINT -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base.cc -o base.o
g++ -I/usr/share/R/include -DNDEBUG -DRPRINT -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c corr.cc -o corr.o
@@ -842,10 +859,10 @@
g++ -I/usr/share/R/include -DNDEBUG -DRPRINT -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tgp.cc -o tgp.o
g++ -I/usr/share/R/include -DNDEBUG -DRPRINT -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tree.cc -o tree.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o tgp.so all_draws.o base.o corr.o dopt.o exp.o exp_sep.o gen_covar.o gp.o lh.o lik_post.o linalg.o list.o matern.o matrix.o model.o mr_exp_sep.o mstructs.o params.o predict.o predict_linear.o rand_draws.o rand_pdf.o randomkit.o rhelp.o sim.o temper.o tgp.o tree.o -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
-make[1]: Leaving directory '/build/1st/r-cran-tgp-2.4-14/src'
-make[1]: Entering directory '/build/1st/r-cran-tgp-2.4-14/src'
-make[1]: Leaving directory '/build/1st/r-cran-tgp-2.4-14/src'
-installing to /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/tgp/libs
+make[1]: Leaving directory '/build/r-cran-tgp-2.4-14/2nd/src'
+make[1]: Entering directory '/build/r-cran-tgp-2.4-14/2nd/src'
+make[1]: Leaving directory '/build/r-cran-tgp-2.4-14/2nd/src'
+installing to /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/tgp/libs
** R
** data
** demo
@@ -857,14 +874,14 @@
** installing vignettes
** testing if installed package can be loaded
* DONE (tgp)
-rm -vf /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/R.css \
- /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/tgp/COPYING \
- /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/tgp/LICENSE.txt \
- /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/lib/R/site-library/tgp/LICENSE
+rm -vf /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/R.css \
+ /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/tgp/COPYING \
+ /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/tgp/LICENSE.txt \
+ /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/lib/R/site-library/tgp/LICENSE
if test -f debian/overrides; then \
- install -d /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/share/lintian/overrides ; \
+ install -d /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/1st/r-cran-tgp-2.4-14/debian/r-cran-tgp/usr/share/lintian/overrides/r-cran-tgp; \
+ /build/r-cran-tgp-2.4-14/2nd/debian/r-cran-tgp/usr/share/lintian/overrides/r-cran-tgp; \
fi
Adding cdbs dependencies to debian/r-cran-tgp.substvars
dh_installdirs -pr-cran-tgp \
@@ -913,15 +930,17 @@
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=binary >../r-cran-tgp_2.4-14-2_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
- dpkg-source --after-build r-cran-tgp-2.4-14
+ dpkg-source --after-build 2nd
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/57286/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/57286/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/26226 and its subdirectories
-I: Current time: Thu Jan 5 15:40:46 -12 2017
-I: pbuilder-time-stamp: 1483674046
+I: removing directory /srv/workspace/pbuilder/57286 and its subdirectories
+I: Current time: Fri Feb 9 00:05:27 +14 2018
+I: pbuilder-time-stamp: 1518084327
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/r-cran-tgp_2.4-14-2.diff: 70.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/r-cran-tgp_2.4-14-2.diff.gz
b2/build.log: 82.2%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 82.6%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/r-cran-tgp_2.4-14-2.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-6zMNbqlc/tmp.c5Km2ZeXcc
+ mv /srv/reproducible-results/rbuild-debian-6zMNbqlc/tmp.c5Km2ZeXcc /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ filter_changes_files
+ sed -i -e '/^ [a-f0-9]\{32,64\} .*\.buildinfo$/d' b1/r-cran-tgp_2.4-14-2_amd64.changes b2/r-cran-tgp_2.4-14-2_amd64.changes
+ call_diffoscope_on_changes_files
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-6zMNbqlc
+ local TMPLOG=/srv/reproducible-results/rbuild-debian-6zMNbqlc/tmp.C7Js6oC6U9
+ local TIMEOUT=120m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-6zMNbqlc -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/rbuild-debian-6zMNbqlc/dbd-tmp-xUSvIRY
++ schroot --directory /srv/reproducible-results/rbuild-debian-6zMNbqlc -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 67'
++ echo diffoscope 67
++ grep '^E: 15binfmt: update-binfmts: unable to open'
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ log_info 'diffoscope 67 will be used to compare the two builds:'
+ _log I: 'diffoscope 67 will be used to compare the two builds:'
+ local prefix=I:
+ shift 1
+ tee -a /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log
++ date -u
+ echo -e 'Fri Jan 6 03:42:30 UTC 2017 I: diffoscope 67 will be used to compare the two builds:'
Fri Jan 6 03:42:30 UTC 2017 I: diffoscope 67 will be used to compare the two builds:
+ set +e
+ set -x
+ timeout 120m nice schroot --directory /srv/reproducible-results/rbuild-debian-6zMNbqlc -c source:jenkins-reproducible-unstable-diffoscope -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian-6zMNbqlc/dbd-tmp-xUSvIRY ; diffoscope --html /srv/reproducible-results/rbuild-debian-6zMNbqlc/r-cran-tgp_2.4-14-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian-6zMNbqlc/r-cran-tgp_2.4-14-2.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-6zMNbqlc/b1/r-cran-tgp_2.4-14-2_amd64.changes /srv/reproducible-results/rbuild-debian-6zMNbqlc/b2/r-cran-tgp_2.4-14-2_amd64.changes'
+ RESULT=1
++ grep '^E: 15binfmt: update-binfmts: unable to open' /srv/reproducible-results/rbuild-debian-6zMNbqlc/tmp.C7Js6oC6U9
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ false
+ set +x
Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian-6zMNbqlc/r-cran-tgp_2.4-14-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian-6zMNbqlc/r-cran-tgp_2.4-14-2.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-6zMNbqlc/b1/r-cran-tgp_2.4-14-2_amd64.changes /srv/reproducible-results/rbuild-debian-6zMNbqlc/b2/r-cran-tgp_2.4-14-2_amd64.changes
========================================================================================================================================================================================================================================================================================================================================================================================================================
close_archive (total time: 0.001s)
----------------------------------
0.000s 18 calls diffoscope.comparators.gzip.GzipContainer
0.000s 12 calls diffoscope.comparators.tar.TarContainer
0.000s 8 calls diffoscope.comparators.deb.DebContainer
0.000s 6 calls diffoscope.comparators.xz.XzContainer
0.000s 6 calls diffoscope.comparators.deb.DebTarContainer
command (total time: 13.798s)
-----------------------------
7.041s 934 calls readelf
2.575s 127 calls diff
2.402s 110 calls objdump
0.714s 6 calls xz
0.598s 2 calls objcopy
0.170s 18 calls gzip
0.170s 50 calls xxd
0.127s 14 calls cmp
0.002s 14 calls cmp (internal)
compare_files (cumulative) (total time: 82.797s)
------------------------------------------------
16.195s 1 call abc.DotChangesFile
15.998s 2 calls abc.DebFile
15.597s 2 calls abc.XzFile
14.940s 2 calls abc.DebDataTarFile
13.922s 2 calls abc.ElfFile
3.276s 10 calls diffoscope.comparators.elf.ElfCodeSection
1.570s 37 calls diffoscope.comparators.elf.ElfSection
0.463s 5 calls abc.GzipFile
0.366s 2 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.132s 2 calls diffoscope.comparators.elf.ElfStringSection
0.125s 2 calls abc.TarFile
0.114s 3 calls diffoscope.comparators.utils.archive.ArchiveMember
0.039s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection
0.035s 1 call abc.TextFile
0.025s 2 calls abc.Md5sumsFile
0.000s 26 calls diffoscope.comparators.utils.libarchive.LibarchiveDirectory
container_extract (total time: 1.093s)
--------------------------------------
0.715s 6 calls diffoscope.comparators.xz.XzContainer
0.173s 18 calls diffoscope.comparators.gzip.GzipContainer
0.112s 22 calls diffoscope.comparators.deb.DebContainer
0.080s 16 calls diffoscope.comparators.deb.DebTarContainer
0.013s 16 calls diffoscope.comparators.tar.TarContainer
has_same_content_as (total time: 1.002s)
----------------------------------------
0.758s 7 calls diffoscope.comparators.utils.archive.ArchiveMember
0.223s 17 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.018s 2 calls diffoscope.comparators.debian.DebControlMember
0.001s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink
0.001s 37 calls diffoscope.comparators.elf.ElfSection
0.000s 26 calls diffoscope.comparators.utils.libarchive.LibarchiveDirectory
0.000s 10 calls diffoscope.comparators.elf.ElfCodeSection
0.000s 1 call abc.DotChangesFile
0.000s 2 calls diffoscope.comparators.elf.ElfStringSection
0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection
main (total time: 27.633s)
--------------------------
27.607s 2 calls outputs
0.022s 1 call cleanup
0.004s 1 call parse_args
open_archive (total time: 0.001s)
---------------------------------
0.000s 18 calls diffoscope.comparators.gzip.GzipContainer
0.000s 12 calls diffoscope.comparators.tar.TarContainer
0.000s 8 calls diffoscope.comparators.deb.DebContainer
0.000s 6 calls diffoscope.comparators.deb.DebTarContainer
0.000s 6 calls diffoscope.comparators.xz.XzContainer
output (total time: 11.384s)
----------------------------
11.260s 1 call html
0.124s 1 call text
recognizes (total time: 0.483s)
-------------------------------
0.257s 1188 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.105s 822 calls diffoscope.comparators.utils.archive.ArchiveMember
0.053s 128 calls diffoscope.comparators.debian.DebControlMember
0.025s 10 calls abc.DotChangesFile
0.016s 666 calls diffoscope.comparators.elf.ElfSection
0.004s 180 calls diffoscope.comparators.elf.ElfCodeSection
0.004s 18 calls abc.GzipFile
0.003s 12 calls abc.TarFile
0.003s 8 calls abc.DebFile
0.002s 18 calls diffoscope.comparators.elf.MonkeyPatchedElfSection
0.002s 8 calls abc.Md5sumsFile
0.002s 6 calls abc.ElfFile
0.002s 6 calls abc.DebDataTarFile
0.001s 36 calls diffoscope.comparators.elf.ElfStringSection
0.001s 6 calls abc.XzFile
0.001s 6 calls abc.TextFile
0.000s 8 calls diffoscope.comparators.binary.FilesystemFile
tee: /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log: No space left on device
Starting cleanup.
/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log:
gzip: /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/r-cran-tgp_2.4-14-2.rbuild.log.gz: No space left on device
Fri 6 Jan 03:42:59 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-dT52kQXB, which will now be removed.
Build step 'Execute shell' marked build as failure
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