[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_arm64_24 #2057
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Fri Jan 6 04:07:18 UTC 2017
https://jenkins.debian.net/job/reproducible_builder_arm64_24/2057/------------------------------------------
[...truncated 830.21 KB...]
-g++ -g -O2 -fdebug-prefix-map=/build/1st/seer-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now fasta.o significant_kmer.o mapMain.o mapCmdLine.o -lboost_program_options -lpthread -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o map_back
-g++ -g -O2 -fdebug-prefix-map=/build/1st/seer-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now significant_kmer.o filter_seer.o filterCmdLine.o -lboost_program_options -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o filter_seer
-g++ -g -O2 -fdebug-prefix-map=/build/1st/seer-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerFilter.o seerIO.o seerChiFilter.o kmdsMain.o kmdsStruct.o kmdsCmdLine.o -lhdf5 -lgzstream -lz -larmadillo -lboost_program_options -llapack -lblas -lpthread -Wl,-z,relro -Wl,-z,now -o kmds
-make[2]: Leaving directory '/build/1st/seer-1.1.2/src'
-make[1]: Leaving directory '/build/1st/seer-1.1.2'
+make[2]: Entering directory '/build/seer-1.1.2/2nd/src'
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o sample.o sample.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o significant_kmer.o significant_kmer.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmer.o kmer.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o covar.o covar.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerCommon.o seerCommon.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerErr.o seerErr.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerFilter.o seerFilter.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerIO.o seerIO.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerChiFilter.o seerChiFilter.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerMain.o seerMain.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerCmdLine.o seerCmdLine.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerContinuousAssoc.o seerContinuousAssoc.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o seerBinaryAssoc.o seerBinaryAssoc.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o logitFunction.o logitFunction.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o linearFunction.o linearFunction.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsMain.o kmdsMain.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsStruct.o kmdsStruct.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o kmdsCmdLine.o kmdsCmdLine.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o fasta.o fasta.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o mapMain.o mapMain.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o mapCmdLine.o mapCmdLine.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineInit.o combineInit.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineCmdLine.o combineCmdLine.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o combineKmers.o combineKmers.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o filter_seer.o filter_seer.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -c -o filterCmdLine.o filterCmdLine.cpp
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerFilter.o seerIO.o seerChiFilter.o seerMain.o seerCmdLine.o seerContinuousAssoc.o seerBinaryAssoc.o logitFunction.o linearFunction.o -lhdf5 -lgzstream -lz -larmadillo -lboost_program_options -llapack -lblas -lpthread -Wl,-z,relro -Wl,-z,now -o seer
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now combineInit.o combineCmdLine.o combineKmers.o -lgzstream -lz -lboost_program_options -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o combineKmers
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now fasta.o significant_kmer.o mapMain.o mapCmdLine.o -lboost_program_options -lpthread -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o map_back
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now significant_kmer.o filter_seer.o filterCmdLine.o -lboost_program_options -Wl,-z,relro -Wl,-z,now -Wl,-z,relro -Wl,-z,now -o filter_seer
+g++ -g -O2 -fdebug-prefix-map=/build/seer-1.1.2/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerFilter.o seerIO.o seerChiFilter.o kmdsMain.o kmdsStruct.o kmdsCmdLine.o -lhdf5 -lgzstream -lz -larmadillo -lboost_program_options -llapack -lblas -lpthread -Wl,-z,relro -Wl,-z,now -o kmds
+make[2]: Leaving directory '/build/seer-1.1.2/2nd/src'
+make[1]: Leaving directory '/build/seer-1.1.2/2nd'
debian/rules override_dh_auto_test
-make[1]: Entering directory '/build/1st/seer-1.1.2'
+make[1]: Entering directory '/build/seer-1.1.2/2nd'
if dh_auto_test ; then echo Test passed ; else echo '****************************** TEST FAILED. Please contact upstream *******************************' ; fi
make -j8 test
-make[2]: Entering directory '/build/1st/seer-1.1.2'
+make[2]: Entering directory '/build/seer-1.1.2/2nd'
cd src && make all
-make[3]: Entering directory '/build/1st/seer-1.1.2/src'
+make[3]: Entering directory '/build/seer-1.1.2/2nd/src'
make[3]: Nothing to be done for 'all'.
-make[3]: Leaving directory '/build/1st/seer-1.1.2/src'
+make[3]: Leaving directory '/build/seer-1.1.2/2nd/src'
cd test && make test
-make[3]: Entering directory '/build/1st/seer-1.1.2/test'
+make[3]: Entering directory '/build/seer-1.1.2/2nd/test'
./run_test.pl && touch tests_passed
PASSED test 1, basic filters
PASSED test 2, binary phenotype assocation
@@ -2670,31 +550,31 @@
PASSED test 6, assocation with covariates
PASSED test 7, filter output
PASSED test 8, map k-mers
-make[3]: Leaving directory '/build/1st/seer-1.1.2/test'
-make[2]: Leaving directory '/build/1st/seer-1.1.2'
+make[3]: Leaving directory '/build/seer-1.1.2/2nd/test'
+make[2]: Leaving directory '/build/seer-1.1.2/2nd'
Test passed
-make[1]: Leaving directory '/build/1st/seer-1.1.2'
+make[1]: Leaving directory '/build/seer-1.1.2/2nd'
fakeroot debian/rules binary
dh binary
dh_testroot
dh_prep
debian/rules override_dh_auto_install
-make[1]: Entering directory '/build/1st/seer-1.1.2'
-dh_auto_install -- PREFIX=/build/1st/seer-1.1.2/debian/seer/usr
- make -j8 install DESTDIR=/build/1st/seer-1.1.2/debian/seer AM_UPDATE_INFO_DIR=no PREFIX=/build/1st/seer-1.1.2/debian/seer/usr
-make[2]: Entering directory '/build/1st/seer-1.1.2'
+make[1]: Entering directory '/build/seer-1.1.2/2nd'
+dh_auto_install -- PREFIX=/build/seer-1.1.2/2nd/debian/seer/usr
+ make -j8 install DESTDIR=/build/seer-1.1.2/2nd/debian/seer AM_UPDATE_INFO_DIR=no PREFIX=/build/seer-1.1.2/2nd/debian/seer/usr
+make[2]: Entering directory '/build/seer-1.1.2/2nd'
cd src && make all
-make[3]: Entering directory '/build/1st/seer-1.1.2/src'
+make[3]: Entering directory '/build/seer-1.1.2/2nd/src'
make[3]: Nothing to be done for 'all'.
-make[3]: Leaving directory '/build/1st/seer-1.1.2/src'
+make[3]: Leaving directory '/build/seer-1.1.2/2nd/src'
cd src && make install
-make[3]: Entering directory '/build/1st/seer-1.1.2/src'
-install -d /build/1st/seer-1.1.2/debian/seer/usr/bin
-install seer kmds map_back combineKmers filter_seer /build/1st/seer-1.1.2/debian/seer/usr/bin
-make[3]: Leaving directory '/build/1st/seer-1.1.2/src'
-make[2]: Leaving directory '/build/1st/seer-1.1.2'
-cp -a scripts/blast_top_hits.pl /build/1st/seer-1.1.2/debian/seer/usr/bin/blast_top_hits
-make[1]: Leaving directory '/build/1st/seer-1.1.2'
+make[3]: Entering directory '/build/seer-1.1.2/2nd/src'
+install -d /build/seer-1.1.2/2nd/debian/seer/usr/bin
+install seer kmds map_back combineKmers filter_seer /build/seer-1.1.2/2nd/debian/seer/usr/bin
+make[3]: Leaving directory '/build/seer-1.1.2/2nd/src'
+make[2]: Leaving directory '/build/seer-1.1.2/2nd'
+cp -a scripts/blast_top_hits.pl /build/seer-1.1.2/2nd/debian/seer/usr/bin/blast_top_hits
+make[1]: Leaving directory '/build/seer-1.1.2/2nd'
dh_installdocs
dh_installchangelogs
dh_installexamples
@@ -2712,8 +592,8 @@
dpkg-shlibdeps: warning: tried to merge the same object (ld-linux-aarch64.so.1) twice in a symfile
dpkg-shlibdeps: warning: tried to merge the same object (ld-linux-aarch64.so.1) twice in a symfile
dpkg-shlibdeps: warning: tried to merge the same object (ld-linux-aarch64.so.1) twice in a symfile
-dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/seer/usr/bin/seer debian/seer/usr/bin/kmds were not linked against liblapack.so.3 (they use none of the library's symbols)
-dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/seer/usr/bin/seer debian/seer/usr/bin/combineKmers debian/seer/usr/bin/kmds were not linked against libz.so.1 (they use none of the library's symbols)
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/seer/usr/bin/combineKmers debian/seer/usr/bin/kmds debian/seer/usr/bin/seer were not linked against libz.so.1 (they use none of the library's symbols)
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/seer/usr/bin/kmds debian/seer/usr/bin/seer were not linked against liblapack.so.3 (they use none of the library's symbols)
dh_installdeb
dh_gencontrol
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
@@ -2728,15 +608,17 @@
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=binary >../seer_1.1.2-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
- dpkg-source --after-build seer-1.1.2
+ dpkg-source --after-build 2nd
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/13901/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/13901/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/10173 and its subdirectories
-I: Current time: Wed Feb 7 22:22:06 -12 2018
-I: pbuilder-time-stamp: 1518085326
+I: removing directory /srv/workspace/pbuilder/13901 and its subdirectories
+I: Current time: Fri Jan 6 18:06:53 +14 2017
+I: pbuilder-time-stamp: 1483675613
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/seer_1.1.2-1.diff: 90.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/seer_1.1.2-1.diff.gz
b2/build.log: 83.4%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 89.2%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/seer_1.1.2-1.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-ynbmM1fq/tmp.pjsMwWFLPS
+ mv /srv/reproducible-results/rbuild-debian-ynbmM1fq/tmp.pjsMwWFLPS /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/seer_1.1.2-1.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/seer_1.1.2-1.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ filter_changes_files
+ sed -i -e '/^ [a-f0-9]\{32,64\} .*\.buildinfo$/d' b1/seer_1.1.2-1_arm64.changes b2/seer_1.1.2-1_arm64.changes
+ call_diffoscope_on_changes_files
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-ynbmM1fq
+ local TMPLOG=/srv/reproducible-results/rbuild-debian-ynbmM1fq/tmp.vwl27lcMJL
+ local TIMEOUT=120m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-ynbmM1fq -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/rbuild-debian-ynbmM1fq/dbd-tmp-NGSUbf2
++ schroot --directory /srv/reproducible-results/rbuild-debian-ynbmM1fq -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 67'
++ echo diffoscope 67
++ grep '^E: 15binfmt: update-binfmts: unable to open'
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ log_info 'diffoscope 67 will be used to compare the two builds:'
+ _log I: 'diffoscope 67 will be used to compare the two builds:'
+ local prefix=I:
+ shift 1
+ tee -a /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/seer_1.1.2-1.rbuild.log
++ date -u
+ echo -e 'Fri Jan 6 04:07:10 UTC 2017 I: diffoscope 67 will be used to compare the two builds:'
Fri Jan 6 04:07:10 UTC 2017 I: diffoscope 67 will be used to compare the two builds:
+ set +e
+ set -x
+ timeout 120m nice schroot --directory /srv/reproducible-results/rbuild-debian-ynbmM1fq -c source:jenkins-reproducible-unstable-diffoscope -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian-ynbmM1fq/dbd-tmp-NGSUbf2 ; diffoscope --html /srv/reproducible-results/rbuild-debian-ynbmM1fq/seer_1.1.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian-ynbmM1fq/seer_1.1.2-1.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-ynbmM1fq/b1/seer_1.1.2-1_arm64.changes /srv/reproducible-results/rbuild-debian-ynbmM1fq/b2/seer_1.1.2-1_arm64.changes'
+ RESULT=0
++ grep '^E: 15binfmt: update-binfmts: unable to open' /srv/reproducible-results/rbuild-debian-ynbmM1fq/tmp.vwl27lcMJL
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ false
+ set +x
Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian-ynbmM1fq/seer_1.1.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian-ynbmM1fq/seer_1.1.2-1.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-ynbmM1fq/b1/seer_1.1.2-1_arm64.changes /srv/reproducible-results/rbuild-debian-ynbmM1fq/b2/seer_1.1.2-1_arm64.changes
============================================================================================================================================================================================================================================================================================================================================================================================
command (total time: 0.000s)
----------------------------
0.000s 1 call cmp (internal)
has_same_content_as (total time: 0.000s)
----------------------------------------
0.000s 1 call abc.DotChangesFile
main (total time: 0.096s)
-------------------------
0.091s 2 calls outputs
0.006s 1 call parse_args
0.000s 1 call cleanup
recognizes (total time: 0.089s)
-------------------------------
0.089s 2 calls abc.DotChangesFile
0.000s 8 calls diffoscope.comparators.binary.FilesystemFile
___ ___ ___ _ __
/ __|/ _ \/ _ \ '__|
\__ \ __/ __/ |
|___/\___|\___|_|
Fri Jan 6 04:07:12 UTC 2017 I: diffoscope 67 found no differences in the changes files, and a .buildinfo file also exists.
Fri Jan 6 04:07:12 UTC 2017 I: seer from unstable built successfully and reproducibly on arm64.
INSERT 0 1
INSERT 0 1
DELETE 1
INFO: Starting at 2017-01-06 04:07:13.298844
INFO: Finished at 2017-01-06 04:07:13.550928, took: 0:00:00.252100
Fri Jan 6 04:07:13 UTC 2017 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/seer.html
Fri Jan 6 04:07:13 UTC 2017 I: Submitting .buildinfo files to external archives:
Fri Jan 6 04:07:16 UTC 2017 I: Done submitting .buildinfo files to submit at buildinfo.kfreebsd.eu.
https://buildinfo.debian.net/5c1489afb7e037157fb51750c2ff1b9ce70a359f/seer_1.1.2-1_arm64
https://buildinfo.debian.net/d66628a9b4ca27d4f2e1124fd26730321a585869/seer_1.1.2-1_arm64
Fri Jan 6 04:07:18 UTC 2017 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Fri Jan 6 04:07:18 UTC 2017 I: Done submitting .buildinfo files.
Fri Jan 6 04:07:18 UTC 2017 I: Removing signed seer_1.1.2-1_arm64.buildinfo.asc files:
removed ‘./b1/seer_1.1.2-1_arm64.buildinfo.asc’
removed ‘./b2/seer_1.1.2-1_arm64.buildinfo.asc’
Fri Jan 6 04:07:18 UTC 2017 - total duration: 0h 11m 34s.
Starting cleanup.
/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/seer_1.1.2-1.rbuild.log:
gzip: /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/seer_1.1.2-1.rbuild.log.gz: No space left on device
Starting cleanup.
/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/seer_1.1.2-1.rbuild.log:
gzip: /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/seer_1.1.2-1.rbuild.log.gz: No space left on device
Fri 6 Jan 04:07:18 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-zFvQ4kuE, which will now be removed.
Build step 'Execute shell' marked build as failure
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