[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_12 #64684
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Sun Jan 8 06:35:21 UTC 2017
https://jenkins.debian.net/job/reproducible_builder_amd64_12/64684/------------------------------------------
[...truncated 94.27 KB...]
Sun Jan 8 06:35:19 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-IeAOUtdo, which will now be removed.
/srv/reproducible-results/rbuild-debian-3cMgDFZ7:
total 44
drwxr-xr-x 2 jenkins jenkins 4096 Jan 8 06:31 b1
drwxr-xr-x 2 jenkins jenkins 4096 Jan 8 06:35 b2
-rw-r--r-- 1 jenkins jenkins 2165 Jun 29 2016 conservation-code_20110309.0-5.dsc
-rw------- 1 jenkins jenkins 30025 Jan 8 06:31 tmp.pQga6pacGC
/srv/reproducible-results/rbuild-debian-3cMgDFZ7/b1:
total 72
-rw-r--r-- 1 jenkins jenkins 26383 Jan 8 06:31 build.log
-rw-r--r-- 1 jenkins jenkins 23578 Jan 8 06:31 conservation-code_20110309.0-5_all.deb
-rw-r--r-- 1 jenkins jenkins 4786 Jan 8 06:31 conservation-code_20110309.0-5_amd64.buildinfo
-rw-r--r-- 1 jenkins jenkins 5652 Jan 8 06:31 conservation-code_20110309.0-5_amd64.buildinfo.asc
-rw-r--r-- 1 jenkins jenkins 1856 Jan 8 06:31 conservation-code_20110309.0-5_amd64.changes
/srv/reproducible-results/rbuild-debian-3cMgDFZ7/b2:
total 72
-rw-r--r-- 1 jenkins jenkins 27369 Jan 8 06:35 build.log
-rw-r--r-- 1 jenkins jenkins 23578 Jan 8 06:35 conservation-code_20110309.0-5_all.deb
-rw-r--r-- 1 jenkins jenkins 4786 Jan 8 06:35 conservation-code_20110309.0-5_amd64.buildinfo
-rw-r--r-- 1 jenkins jenkins 5652 Jan 8 06:35 conservation-code_20110309.0-5_amd64.buildinfo.asc
-rw-r--r-- 1 jenkins jenkins 1856 Jan 8 06:35 conservation-code_20110309.0-5_amd64.changes
Sun Jan 8 06:35:19 UTC 2017 I: conservation-code_20110309.0-5_amd64.changes:
Format: 1.8
Date: Thu, 02 Jun 2016 01:10:35 +0000
Source: conservation-code
Binary: conservation-code
Architecture: all
Version: 20110309.0-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Tatiana Malygina <merlettaia at gmail.com>
Description:
conservation-code - protein sequence conservation scoring tool
Changes:
conservation-code (20110309.0-5) unstable; urgency=medium
.
* Team upload
[ Tatiana Malygina ]
* add draft autopkgtest
* fixed example file in test + added test with error in matrix path
* upstream fix - to load identity matrix without error when no alignment
matrix is found
* add hardening
* allow-stderr for testsuite to allow test pass instead of fail when matrix
file is not found
* verbose output in test + check distributions usage
* simplified debian/tests/non-default-params-test, but made more verbose
debian/README.test
* cme fix dpkg-copyright
.
[ Andreas Tille ]
* install link to /usr/bin rather than copy of Python file
* Add dh-python to Build-Depends (and drop unneeded perl)
* Add debian/README.test
* Secure Vcs-Browser
Checksums-Sha1:
ad0a9ae818f35371d42c5585480b6f212efea5dc 23578 conservation-code_20110309.0-5_all.deb
244098578b4db9441b4a28bf55ea661e0732576f 4786 conservation-code_20110309.0-5_amd64.buildinfo
Checksums-Sha256:
09ec0a576ef3b9ce7cb65d885c817b8267fb1bb76ffc42f6d2dbadb0b44e378f 23578 conservation-code_20110309.0-5_all.deb
dfe3148360ad5273436f9d6768c0c9183dd72b88b22a27ec9293686e28394443 4786 conservation-code_20110309.0-5_amd64.buildinfo
Files:
5d2079bca46c12815b4d19065332dc75 23578 science optional conservation-code_20110309.0-5_all.deb
65fd88ace55b0bdcb3da1e19652195dd 4786 science optional conservation-code_20110309.0-5_amd64.buildinfo
removed ‘/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/conservation-code_20110309.0-5.rbuild.log’
removed ‘/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/conservation-code_20110309.0-5.build1.log.gz’
removed ‘/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/conservation-code_20110309.0-5.build2.log.gz’
removed ‘/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/conservation-code_20110309.0-5.diff.gz’
Diff of the two buildlogs:
--
--- b1/build.log 2017-01-08 06:31:32.746784850 +0000
+++ b2/build.log 2017-01-08 06:35:19.618321639 +0000
@@ -1,10 +1,7 @@
I: using fakeroot in build.
-OK: 577 ok
-577 packages current.
-|obs_loc=0;1;5;0 outdated=0;1;5;0 current=577;;;0 obs_ign=0;;;0 rm_unprg=0;;;0 hold=0;;;0 prg_conf=0;1;;0 security_outdated=0;;1;0
I: pbuilder: network access will be disabled during build
-I: Current time: Sat Feb 10 00:53:46 -12 2018
-I: pbuilder-time-stamp: 1518267226
+I: Current time: Sun Jan 8 20:31:37 +14 2017
+I: pbuilder-time-stamp: 1483857097
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
@@ -21,7 +18,7 @@
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
-gpgv: Signature made Wed Jun 29 00:45:49 2016 -12
+gpgv: Signature made Thu Jun 30 02:45:49 2016 +14
gpgv: using RSA key 578A0494D1C646D1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./conservation-code_20110309.0-5.dsc
@@ -38,6 +35,18 @@
dpkg-source: info: applying usage
dpkg-source: info: applying fix_load_identity_matrix
I: Installing the build-deps
+I: user script /srv/workspace/pbuilder/61316/tmp/hooks/D01_modify_environment starting
+disorder-fs debug: Running on profitbricks-build1-amd64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
+Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
+Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
+Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/61316/tmp/hooks/D01_modify_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -127,7 +136,7 @@
Get: 48 http://ftp.de.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get: 49 http://ftp.de.debian.org/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB]
Get: 50 http://ftp.de.debian.org/debian unstable/main amd64 debhelper all 10.2.3 [829 kB]
-Fetched 30.4 MB in 0s (51.5 MB/s)
+Fetched 30.4 MB in 1s (18.4 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package groff-base.
(Reading database ... (Reading database ... 5%(Reading database ... 10%(Reading database ... 15%(Reading database ... 20%(Reading database ... 25%(Reading database ... 30%(Reading database ... 35%(Reading database ... 40%(Reading database ... 45%(Reading database ... 50%(Reading database ... 55%(Reading database ... 60%(Reading database ... 65%(Reading database ... 70%(Reading database ... 75%(Reading database ... 80%(Reading database ... 85%(Reading database ... 90%(Reading database ... 95%(Reading database ... 100%(Reading database ... 18558 files and directories currently installed.)
@@ -353,21 +362,23 @@
fakeroot is already the newest version (1.21-3).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
-I: Running cd /build/1st/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b --buildinfo-id=amd64 -rfakeroot
+I: user script /srv/workspace/pbuilder/61316/tmp/hooks/A01_modfiy_src_dir starting
+I: user script /srv/workspace/pbuilder/61316/tmp/hooks/A01_modfiy_src_dir finished
+I: Running cd /build/conservation-code-20110309.0/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b --buildinfo-id=amd64 -rfakeroot
dpkg-buildpackage: warning: --buildinfo-id is deprecated, it is without effect
dpkg-buildpackage: info: source package conservation-code
dpkg-buildpackage: info: source version 20110309.0-5
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Tatiana Malygina <merlettaia at gmail.com>
- dpkg-source --before-build conservation-code-20110309.0
+ dpkg-source --before-build 2nd
dpkg-buildpackage: info: host architecture amd64
fakeroot debian/rules clean
dh clean --parallel --with python2
dh_testdir -O--parallel
debian/rules override_dh_auto_clean
-make[1]: Entering directory '/build/1st/conservation-code-20110309.0'
+make[1]: Entering directory '/build/conservation-code-20110309.0/2nd'
rm -f debian/score_conservation.1 ChangeLog
-make[1]: Leaving directory '/build/1st/conservation-code-20110309.0'
+make[1]: Leaving directory '/build/conservation-code-20110309.0/2nd'
dh_clean -O--parallel
debian/rules build
dh build --parallel --with python2
@@ -375,11 +386,11 @@
dh_update_autotools_config -O--parallel
dh_auto_configure -O--parallel
debian/rules override_dh_auto_build
-make[1]: Entering directory '/build/1st/conservation-code-20110309.0'
+make[1]: Entering directory '/build/conservation-code-20110309.0/2nd'
sed -e 's|__docdir__|/usr/share/doc/conservation-code|g;s|__pkgdatadir__|/usr/share/conservation-code|g;s|__VERSION__|20110309.0|g;' "debian/score_conservation.1.pod" | \
pod2man -c 'User Commands' -r "20110309.0" -name DEBIAN/SCORE_CONSERVATION > "debian/score_conservation.1"
dh override_dh_auto_build --parallel --with python2
-make[1]: Leaving directory '/build/1st/conservation-code-20110309.0'
+make[1]: Leaving directory '/build/conservation-code-20110309.0/2nd'
dh_auto_test -O--parallel
fakeroot debian/rules binary
dh binary --parallel --with python2
@@ -387,16 +398,16 @@
dh_prep -O--parallel
dh_auto_install -O--parallel
debian/rules override_dh_install
-make[1]: Entering directory '/build/1st/conservation-code-20110309.0'
+make[1]: Entering directory '/build/conservation-code-20110309.0/2nd'
dh_install -X._
-make[1]: Leaving directory '/build/1st/conservation-code-20110309.0'
+make[1]: Leaving directory '/build/conservation-code-20110309.0/2nd'
dh_installdocs -O--parallel
debian/rules override_dh_installchangelogs
-make[1]: Entering directory '/build/1st/conservation-code-20110309.0'
+make[1]: Entering directory '/build/conservation-code-20110309.0/2nd'
# Courtesy of Jakub Wilk:
sed -n -e '/# [0-9/]\{8\}/ { s/# // p }' < score_conservation.py > ChangeLog
dh_installchangelogs
-make[1]: Leaving directory '/build/1st/conservation-code-20110309.0'
+make[1]: Leaving directory '/build/conservation-code-20110309.0/2nd'
dh_installexamples -O--parallel
dh_installman -O--parallel
dh_python2 -O--parallel
@@ -415,15 +426,17 @@
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=binary >../conservation-code_20110309.0-5_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
- dpkg-source --after-build conservation-code-20110309.0
+ dpkg-source --after-build 2nd
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/61316/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/61316/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/13855 and its subdirectories
-I: Current time: Sat Feb 10 00:54:33 -12 2018
-I: pbuilder-time-stamp: 1518267273
+I: removing directory /srv/workspace/pbuilder/61316 and its subdirectories
+I: Current time: Sun Jan 8 20:35:19 +14 2017
+I: pbuilder-time-stamp: 1483857319
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/conservation-code_20110309.0-5.diff: 68.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/conservation-code_20110309.0-5.diff.gz
b2/build.log: 80.1%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 80.2%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/conservation-code_20110309.0-5.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-3cMgDFZ7/tmp.pQga6pacGC
+ mv /srv/reproducible-results/rbuild-debian-3cMgDFZ7/tmp.pQga6pacGC /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/conservation-code_20110309.0-5.rbuild.log
mv: error writing ‘/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/conservation-code_20110309.0-5.rbuild.log’: No space left on device
mv: failed to extend ‘/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/conservation-code_20110309.0-5.rbuild.log’: No space left on device
+ cleanup_all
+ echo 'Starting cleanup.'
Starting cleanup.
+ '[' 0 = 1 ']'
+ '[' '!' -z '' ']'
+ '[' '!' -f /srv/reproducible-results/rbuild-debian-3cMgDFZ7/tmp.pQga6pacGC ']'
+ gzip -9fvn /srv/reproducible-results/rbuild-debian-3cMgDFZ7/tmp.pQga6pacGC
/srv/reproducible-results/rbuild-debian-3cMgDFZ7/tmp.pQga6pacGC: 76.0% -- replaced with /srv/reproducible-results/rbuild-debian-3cMgDFZ7/tmp.pQga6pacGC.gz
+ '[' master = master ']'
+ gen_package_html conservation-code
+ cd /srv/jenkins/bin
+ python3 -c 'import reproducible_html_packages as rep
pkg = rep.Package('\''conservation-code'\'', no_notes=True)
rep.gen_packages_html([pkg], no_clean=True)'
INFO: Starting at 2017-01-08 06:35:20.647742
CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/conservation-code_20110309.0-5_amd64.buildinfo
INFO: Finished at 2017-01-08 06:35:20.875176, took: 0:00:00.227446
+ cd -
+ cd
+ rm -r /srv/reproducible-results/rbuild-debian-3cMgDFZ7
+ echo 'All cleanup done.'
All cleanup done.
Sun 8 Jan 06:35:20 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-tbhjek4k, which will now be removed.
Build step 'Execute shell' marked build as failure
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