[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_arm64_23 #4116
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Fri Feb 3 05:02:26 UTC 2017
https://jenkins.debian.net/job/reproducible_builder_arm64_23/4116/------------------------------------------
[...truncated 87.29 KB...]
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille at debian.org>
- dpkg-source --before-build poa-2.0+20060928
+ dpkg-source --before-build 2nd
dpkg-buildpackage: info: host architecture arm64
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
make -j1 clean
-make[1]: Entering directory '/build/1st/poa-2.0+20060928'
+make[1]: Entering directory '/build/poa-2.0+20060928/2nd'
rm -f align_score.o main.o black_flag.o seq_util.o fasta_format.o msa_format.o align_lpo2.o align_lpo_po2.o buildup_lpo.o lpo.o heaviest_bundle.o lpo_format.o create_seq.o remove_bundle.o numeric_data.o stringptr.o poa liblpo.a poa_doc libbflag.a
-make[1]: Leaving directory '/build/1st/poa-2.0+20060928'
+make[1]: Leaving directory '/build/poa-2.0+20060928/2nd'
dh_clean
debian/rules build
dh build
@@ -264,9 +281,9 @@
dh_update_autotools_config
dh_auto_configure
debian/rules override_dh_auto_build
-make[1]: Entering directory '/build/1st/poa-2.0+20060928'
+make[1]: Entering directory '/build/poa-2.0+20060928/2nd'
/usr/bin/make poa
-make[2]: Entering directory '/build/1st/poa-2.0+20060928'
+make[2]: Entering directory '/build/poa-2.0+20060928/2nd'
gcc -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o align_score.o align_score.c
gcc -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o main.o main.c
gcc -g -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o black_flag.o black_flag.c
@@ -298,18 +315,18 @@
ar rc liblpo.a black_flag.o seq_util.o fasta_format.o msa_format.o align_lpo2.o align_lpo_po2.o buildup_lpo.o lpo.o heaviest_bundle.o lpo_format.o create_seq.o remove_bundle.o numeric_data.o stringptr.o
ranlib liblpo.a
gcc -o poa align_score.o main.o -lm liblpo.a -Wl,-z,relro
-make[2]: Leaving directory '/build/1st/poa-2.0+20060928'
-make[1]: Leaving directory '/build/1st/poa-2.0+20060928'
+make[2]: Leaving directory '/build/poa-2.0+20060928/2nd'
+make[1]: Leaving directory '/build/poa-2.0+20060928/2nd'
debian/rules override_dh_auto_test
-make[1]: Entering directory '/build/1st/poa-2.0+20060928'
+make[1]: Entering directory '/build/poa-2.0+20060928/2nd'
tmpfile=`mktemp` ; \
./poa -read_fasta multidom.seq -clustal $tmpfile -v blosum80.mat ; \
-if cmp $tmpfile /build/1st/poa-2.0+20060928/debian/test/multidom.clustal ; then \
+if cmp $tmpfile /build/poa-2.0+20060928/2nd/debian/test/multidom.clustal ; then \
echo "Test passed" ; \
rm -f $tmpfile ; \
else \
echo "TEST FAILED!!!" ; \
- echo "File $tmpfile is different from /build/1st/poa-2.0+20060928/multidom.clustal" ; \
+ echo "File $tmpfile is different from /build/poa-2.0+20060928/2nd/multidom.clustal" ; \
exit 1 ; \
fi
...Read 4 sequences from sequence file multidom.seq...
@@ -320,13 +337,13 @@
aligned (1394 nodes, 1413 edges) to (217 nodes, 216 edges): best local score = 437 @ (1274 215)
Fusing cluster 3 (MATK_HUMAN, nseq=1) --> 0 (ABL1_HUMAN, nseq=3)... score -1.00
aligned (1532 nodes, 1601 edges) to (507 nodes, 506 edges): best local score = 1212 @ (654 470)
-...Wrote 4 sequences to CLUSTAL file /tmp/tmp.srE1EZfJkk...
+...Wrote 4 sequences to CLUSTAL file /tmp/tmp.pvw1ujfSi0...
X-Gap Penalties (Open, Aff1, Aff2; LTrunc, LDecay): 12 6 6 16 0
X-Gap Penalties (0, 1, 2, ...): 12 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 ...
Y-Gap Penalties (Open, Aff1, Aff2; LTrunc, LDecay): 12 6 6 16 0
Y-Gap Penalties (0, 1, 2, ...): 12 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 ...
Test passed
-make[1]: Leaving directory '/build/1st/poa-2.0+20060928'
+make[1]: Leaving directory '/build/poa-2.0+20060928/2nd'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary
dh binary
@@ -360,15 +377,17 @@
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../poa_2.0+20060928-4_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
- dpkg-source --after-build poa-2.0+20060928
+ dpkg-source --after-build 2nd
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/22453/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/22453/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/12194 and its subdirectories
-I: Current time: Thu Feb 2 17:01:32 -12 2017
-I: pbuilder-time-stamp: 1486098092
+I: removing directory /srv/workspace/pbuilder/22453 and its subdirectories
+I: Current time: Fri Mar 9 01:25:13 +14 2018
+I: pbuilder-time-stamp: 1520508313
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/poa_2.0+20060928-4.diff: 66.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/poa_2.0+20060928-4.diff.gz
b2/build.log: 76.1%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 76.5%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/poa_2.0+20060928-4.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-uAuepgTY/tmp.ZC9dZ4HQmM
+ mv /srv/reproducible-results/rbuild-debian-uAuepgTY/tmp.ZC9dZ4HQmM /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/poa_2.0+20060928-4.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/poa_2.0+20060928-4.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ filter_changes_files
+ sed -i -e '/^ [a-f0-9]\{32,64\} .*\.buildinfo$/d' b1/poa_2.0+20060928-4_arm64.changes b2/poa_2.0+20060928-4_arm64.changes
+ call_diffoscope_on_changes_files
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-uAuepgTY
+ local TMPLOG=/srv/reproducible-results/rbuild-debian-uAuepgTY/tmp.L4BrYg7SAq
+ local TIMEOUT=120m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-uAuepgTY -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/rbuild-debian-uAuepgTY/dbd-tmp-czO05ds
++ schroot --directory /srv/reproducible-results/rbuild-debian-uAuepgTY -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 70'
++ echo diffoscope 70
++ grep '^E: 15binfmt: update-binfmts: unable to open'
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ log_info 'diffoscope 70 will be used to compare the two builds:'
+ _log I: 'diffoscope 70 will be used to compare the two builds:'
+ local prefix=I:
+ shift 1
+ tee -a /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/poa_2.0+20060928-4.rbuild.log
++ date -u
+ echo -e 'Fri Feb 3 05:02:17 UTC 2017 I: diffoscope 70 will be used to compare the two builds:'
Fri Feb 3 05:02:17 UTC 2017 I: diffoscope 70 will be used to compare the two builds:
+ set +e
+ set -x
+ timeout 120m nice schroot --directory /srv/reproducible-results/rbuild-debian-uAuepgTY -c source:jenkins-reproducible-unstable-diffoscope -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian-uAuepgTY/dbd-tmp-czO05ds ; diffoscope --html /srv/reproducible-results/rbuild-debian-uAuepgTY/poa_2.0+20060928-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian-uAuepgTY/poa_2.0+20060928-4.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-uAuepgTY/b1/poa_2.0+20060928-4_arm64.changes /srv/reproducible-results/rbuild-debian-uAuepgTY/b2/poa_2.0+20060928-4_arm64.changes'
+ RESULT=1
++ grep '^E: 15binfmt: update-binfmts: unable to open' /srv/reproducible-results/rbuild-debian-uAuepgTY/tmp.L4BrYg7SAq
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ false
+ set +x
Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian-uAuepgTY/poa_2.0+20060928-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian-uAuepgTY/poa_2.0+20060928-4.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-uAuepgTY/b1/poa_2.0+20060928-4_arm64.changes /srv/reproducible-results/rbuild-debian-uAuepgTY/b2/poa_2.0+20060928-4_arm64.changes
====================================================================================================================================================================================================================================================================================================================================================================================================================
close_archive (total time: 0.001s)
----------------------------------
0.000s 12 calls diffoscope.comparators.gzip.GzipContainer
0.000s 12 calls diffoscope.comparators.tar.TarContainer
0.000s 6 calls diffoscope.comparators.xz.XzContainer
0.000s 8 calls diffoscope.comparators.deb.DebContainer
0.000s 6 calls diffoscope.comparators.deb.DebTarContainer
command (total time: 4.026s)
----------------------------
1.291s 112 calls diff
1.106s 898 calls readelf
1.021s 88 calls objdump
0.334s 2 calls objcopy
0.105s 12 calls gzip
0.098s 6 calls xz
0.070s 8 calls cmp
0.002s 12 calls cmp (internal)
compare_files (cumulative) (total time: 30.982s)
------------------------------------------------
5.972s 1 call abc.DotChangesFile
5.786s 2 calls abc.DebFile
5.449s 2 calls abc.XzFile
5.361s 2 calls abc.DebDataTarFile
5.201s 2 calls abc.ElfFile
1.469s 8 calls diffoscope.comparators.elf.ElfCodeSection
1.159s 33 calls diffoscope.comparators.elf.ElfSection
0.227s 2 calls abc.GzipFile
0.157s 2 calls abc.TarFile
0.097s 2 calls diffoscope.comparators.elf.ElfStringSection
0.042s 1 call abc.TextFile
0.036s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection
0.027s 2 calls abc.Md5sumsFile
0.000s 19 calls diffoscope.comparators.utils.libarchive.LibarchiveDirectory
container_extract (total time: 0.250s)
--------------------------------------
0.107s 12 calls diffoscope.comparators.gzip.GzipContainer
0.098s 6 calls diffoscope.comparators.xz.XzContainer
0.017s 6 calls diffoscope.comparators.deb.DebTarContainer
0.014s 16 calls diffoscope.comparators.tar.TarContainer
0.014s 22 calls diffoscope.comparators.deb.DebContainer
has_same_content_as (total time: 0.214s)
----------------------------------------
0.118s 4 calls diffoscope.comparators.utils.archive.ArchiveMember
0.076s 12 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.017s 2 calls diffoscope.comparators.debian.DebControlMember
0.001s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink
0.001s 33 calls diffoscope.comparators.elf.ElfSection
0.000s 19 calls diffoscope.comparators.utils.libarchive.LibarchiveDirectory
0.000s 8 calls diffoscope.comparators.elf.ElfCodeSection
0.000s 1 call abc.DotChangesFile
0.000s 2 calls diffoscope.comparators.elf.ElfStringSection
0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection
main (total time: 7.307s)
-------------------------
7.297s 2 calls outputs
0.010s 1 call cleanup
open_archive (total time: 0.001s)
---------------------------------
0.000s 12 calls diffoscope.comparators.tar.TarContainer
0.000s 6 calls diffoscope.comparators.deb.DebTarContainer
0.000s 12 calls diffoscope.comparators.gzip.GzipContainer
0.000s 8 calls diffoscope.comparators.deb.DebContainer
0.000s 6 calls diffoscope.comparators.xz.XzContainer
output (total time: 1.317s)
---------------------------
1.281s 1 call html
0.036s 1 call text
recognizes (total time: 0.053s)
-------------------------------
0.018s 478 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.013s 594 calls diffoscope.comparators.elf.ElfSection
0.006s 10 calls diffoscope.comparators.binary.FilesystemFile
0.005s 258 calls diffoscope.comparators.utils.archive.ArchiveMember
0.004s 144 calls diffoscope.comparators.elf.ElfCodeSection
0.002s 18 calls diffoscope.comparators.elf.MonkeyPatchedElfSection
0.002s 88 calls diffoscope.comparators.debian.DebControlMember
0.002s 36 calls diffoscope.comparators.elf.ElfStringSection
0.000s 8 calls abc.DotChangesFile
Fri Feb 3 05:02:25 UTC 2017 E: poa failed to build reproducibly in unstable on arm64.
mv: error writing ‘/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/unstable/arm64/poa_2.0+20060928-4.diffoscope.txt’: No space left on device
mv: failed to extend ‘/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/unstable/arm64/poa_2.0+20060928-4.diffoscope.txt’: No space left on device
Starting cleanup.
/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/poa_2.0+20060928-4.rbuild.log:
gzip: /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/poa_2.0+20060928-4.rbuild.log.gz: No space left on device
Fri 3 Feb 05:02:25 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-TXU0U71U, which will now be removed.
Build step 'Execute shell' marked build as failure
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