[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_arm64_23 #4121
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Fri Feb 3 05:59:36 UTC 2017
https://jenkins.debian.net/job/reproducible_builder_arm64_23/4121/------------------------------------------
[...truncated 272.29 KB...]
dpkg-buildpackage: info: source version 1.48-0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille at debian.org>
- dpkg-source --before-build r-cran-spatstat-1.48-0
+ dpkg-source --before-build 2nd
dpkg-buildpackage: info: host architecture arm64
fakeroot debian/rules clean
dh clean --buildsystem R
@@ -863,12 +880,12 @@
I: Building using R version 3.3.2-1
I: R API version: r-api-3
I: Using built-time from d/changelog: Thu, 05 Jan 2017 17:45:22 +0100
- mkdir -p /build/1st/r-cran-spatstat-1.48-0/debian/r-cran-spatstat/usr/lib/R/site-library
- R CMD INSTALL -l /build/1st/r-cran-spatstat-1.48-0/debian/r-cran-spatstat/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 05 Jan 2017 17:45:22 +0100'"
+ mkdir -p /build/r-cran-spatstat-1.48-0/2nd/debian/r-cran-spatstat/usr/lib/R/site-library
+ R CMD INSTALL -l /build/r-cran-spatstat-1.48-0/2nd/debian/r-cran-spatstat/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 05 Jan 2017 17:45:22 +0100'"
* installing *source* package 'spatstat' ...
** package 'spatstat' successfully unpacked and MD5 sums checked
** libs
-make[1]: Entering directory '/build/1st/r-cran-spatstat-1.48-0/src'
+make[1]: Entering directory '/build/r-cran-spatstat-1.48-0/2nd/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-l2QCH5/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Ediggatsti.c -o Ediggatsti.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-l2QCH5/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Ediggra.c -o Ediggra.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-l2QCH5/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Efiksel.c -o Efiksel.o
@@ -971,10 +988,10 @@
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-l2QCH5/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c whist.c -o whist.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-l2QCH5/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xyseg.c -o xyseg.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o spatstat.so Ediggatsti.o Ediggra.o Efiksel.o Egeyer.o Estrauss.o Kborder.o Knone.o Krect.o Perfect.o areadiff.o areaint.o areapair.o auctionbf.o badgey.o bdrymask.o call3d.o close3pair.o closepair.o connect.o corrections.o denspt.o densptcross.o dgs.o digber.o diggra.o dinfty.o discarea.o discs.o dist2.o dist2dpath.o distan3.o distances.o distmapbin.o distseg.o dwpure.o exactPdist.o exactdist.o f3.o fardist.o fastinterv.o fexitc.o fiksel.o g3.o getcif.o geyer.o hardcore.o hasclose.o idw.o inxyp.o k3.o knndistance.o knngrid.o lennard.o linSnncross.o linalg.o lincrossdist.o lineardisc.o linearradius.o linequad.o linknnd.o linnncross.o linnndist.o linpairdist.o linvdist.o linvknndist.o lixel.o localpcf.o loccum.o lookup.o massdisthack.o methas.o mhsnoop.o minnnd.o multihard.o nn3Ddist.o nnMDdist.o nndistance.o nngrid.o pcf3.o penttinen.o ply.o poly2im.o quasirandom.o rthin.o scan.o seg2pix.o segdens.o sftcr.o sparselinalg.o sphefrac.o sphevol.o straush.o straushm.o strauss.o straussm.o trigraf.o triplets.o utils.o veegraf.o whist.o xyseg.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory '/build/1st/r-cran-spatstat-1.48-0/src'
-make[1]: Entering directory '/build/1st/r-cran-spatstat-1.48-0/src'
-make[1]: Leaving directory '/build/1st/r-cran-spatstat-1.48-0/src'
-installing to /build/1st/r-cran-spatstat-1.48-0/debian/r-cran-spatstat/usr/lib/R/site-library/spatstat/libs
+make[1]: Leaving directory '/build/r-cran-spatstat-1.48-0/2nd/src'
+make[1]: Entering directory '/build/r-cran-spatstat-1.48-0/2nd/src'
+make[1]: Leaving directory '/build/r-cran-spatstat-1.48-0/2nd/src'
+installing to /build/r-cran-spatstat-1.48-0/2nd/debian/r-cran-spatstat/usr/lib/R/site-library/spatstat/libs
** R
** data
*** moving datasets to lazyload DB
@@ -1007,10 +1024,10 @@
I: Using r-cran-polyclip for Imports:polyclip (>= 1.5-0)
I: Using r-cran-goftest for Imports:goftest
debian/rules override_dh_install
-make[1]: Entering directory '/build/1st/r-cran-spatstat-1.48-0'
+make[1]: Entering directory '/build/r-cran-spatstat-1.48-0/2nd'
dh_install
find debian -type d -name ratfor | xargs rm -rf
-make[1]: Leaving directory '/build/1st/r-cran-spatstat-1.48-0'
+make[1]: Leaving directory '/build/r-cran-spatstat-1.48-0/2nd'
dh_installdocs -O--buildsystem=R
dh_installchangelogs -O--buildsystem=R
dh_installexamples -O--buildsystem=R
@@ -1046,12 +1063,12 @@
dh_strip_nondeterminism -O--buildsystem=R
dh_compress -O--buildsystem=R
debian/rules override_dh_fixperms
-make[1]: Entering directory '/build/1st/r-cran-spatstat-1.48-0'
+make[1]: Entering directory '/build/r-cran-spatstat-1.48-0/2nd'
dh_fixperms
find debian -name CITATION -exec chmod -x \{\} \;
find debian -name "*.txt" -exec chmod -x \{\} \;
find debian -name "*.Rnw" -exec chmod -x \{\} \;
-make[1]: Leaving directory '/build/1st/r-cran-spatstat-1.48-0'
+make[1]: Leaving directory '/build/r-cran-spatstat-1.48-0/2nd'
dh_strip -O--buildsystem=R
dh_makeshlibs -O--buildsystem=R
dh_shlibdeps -O--buildsystem=R
@@ -1066,15 +1083,17 @@
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../r-cran-spatstat_1.48-0-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
- dpkg-source --after-build r-cran-spatstat-1.48-0
+ dpkg-source --after-build 2nd
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/6809/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/6809/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/504 and its subdirectories
-I: Current time: Thu Feb 2 17:52:30 -12 2017
-I: pbuilder-time-stamp: 1486101150
+I: removing directory /srv/workspace/pbuilder/6809 and its subdirectories
+I: Current time: Fri Mar 9 02:21:25 +14 2018
+I: pbuilder-time-stamp: 1520511685
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/r-cran-spatstat_1.48-0-1.diff: 69.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/r-cran-spatstat_1.48-0-1.diff.gz
b2/build.log: 85.1%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 85.4%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/r-cran-spatstat_1.48-0-1.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-axwUBK7B/tmp.dwCGCirquO
+ mv /srv/reproducible-results/rbuild-debian-axwUBK7B/tmp.dwCGCirquO /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/r-cran-spatstat_1.48-0-1.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/r-cran-spatstat_1.48-0-1.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ filter_changes_files
+ sed -i -e '/^ [a-f0-9]\{32,64\} .*\.buildinfo$/d' b1/r-cran-spatstat_1.48-0-1_arm64.changes b2/r-cran-spatstat_1.48-0-1_arm64.changes
+ call_diffoscope_on_changes_files
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-axwUBK7B
+ local TMPLOG=/srv/reproducible-results/rbuild-debian-axwUBK7B/tmp.7gPIB8P5T5
+ local TIMEOUT=120m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-axwUBK7B -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/rbuild-debian-axwUBK7B/dbd-tmp-SAgzPLQ
++ schroot --directory /srv/reproducible-results/rbuild-debian-axwUBK7B -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 70'
++ echo diffoscope 70
++ grep '^E: 15binfmt: update-binfmts: unable to open'
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ log_info 'diffoscope 70 will be used to compare the two builds:'
+ _log I: 'diffoscope 70 will be used to compare the two builds:'
+ local prefix=I:
+ shift 1
+ tee -a /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/r-cran-spatstat_1.48-0-1.rbuild.log
++ date -u
+ echo -e 'Fri Feb 3 05:58:32 UTC 2017 I: diffoscope 70 will be used to compare the two builds:'
Fri Feb 3 05:58:32 UTC 2017 I: diffoscope 70 will be used to compare the two builds:
+ set +e
+ set -x
+ timeout 120m nice schroot --directory /srv/reproducible-results/rbuild-debian-axwUBK7B -c source:jenkins-reproducible-unstable-diffoscope -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian-axwUBK7B/dbd-tmp-SAgzPLQ ; diffoscope --html /srv/reproducible-results/rbuild-debian-axwUBK7B/r-cran-spatstat_1.48-0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian-axwUBK7B/r-cran-spatstat_1.48-0-1.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-axwUBK7B/b1/r-cran-spatstat_1.48-0-1_arm64.changes /srv/reproducible-results/rbuild-debian-axwUBK7B/b2/r-cran-spatstat_1.48-0-1_arm64.changes'
+ RESULT=1
++ grep '^E: 15binfmt: update-binfmts: unable to open' /srv/reproducible-results/rbuild-debian-axwUBK7B/tmp.7gPIB8P5T5
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ false
+ set +x
Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian-axwUBK7B/r-cran-spatstat_1.48-0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian-axwUBK7B/r-cran-spatstat_1.48-0-1.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-axwUBK7B/b1/r-cran-spatstat_1.48-0-1_arm64.changes /srv/reproducible-results/rbuild-debian-axwUBK7B/b2/r-cran-spatstat_1.48-0-1_arm64.changes
============================================================================================================================================================================================================================================================================================================================================================================================================================================
close_archive (total time: 0.001s)
----------------------------------
0.000s 16 calls diffoscope.comparators.gzip.GzipContainer
0.000s 12 calls diffoscope.comparators.tar.TarContainer
0.000s 6 calls diffoscope.comparators.xz.XzContainer
0.000s 6 calls diffoscope.comparators.deb.DebTarContainer
0.000s 8 calls diffoscope.comparators.deb.DebContainer
command (total time: 28.037s)
-----------------------------
7.511s 121 calls diff
6.085s 912 calls readelf
5.460s 40 calls xxd
4.058s 88 calls objdump
3.574s 6 calls xz
0.992s 2 calls objcopy
0.204s 16 calls gzip
0.152s 13 calls cmp
0.002s 13 calls cmp (internal)
compare_files (cumulative) (total time: 152.590s)
-------------------------------------------------
30.973s 1 call abc.DotChangesFile
30.746s 2 calls abc.DebFile
30.135s 2 calls abc.XzFile
26.687s 2 calls abc.DebDataTarFile
15.914s 2 calls abc.ElfFile
9.591s 2 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
5.504s 8 calls diffoscope.comparators.elf.ElfCodeSection
1.678s 35 calls diffoscope.comparators.elf.ElfSection
0.652s 4 calls abc.GzipFile
0.278s 2 calls diffoscope.comparators.utils.archive.ArchiveMember
0.177s 2 calls abc.TarFile
0.099s 2 calls diffoscope.comparators.elf.ElfStringSection
0.065s 2 calls abc.TextFile
0.063s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection
0.028s 2 calls abc.Md5sumsFile
0.000s 37 calls diffoscope.comparators.utils.libarchive.LibarchiveDirectory
container_extract (total time: 4.739s)
--------------------------------------
3.575s 6 calls diffoscope.comparators.xz.XzContainer
0.556s 22 calls diffoscope.comparators.deb.DebContainer
0.390s 14 calls diffoscope.comparators.deb.DebTarContainer
0.206s 16 calls diffoscope.comparators.gzip.GzipContainer
0.013s 16 calls diffoscope.comparators.tar.TarContainer
has_same_content_as (total time: 4.321s)
----------------------------------------
3.558s 6 calls diffoscope.comparators.utils.archive.ArchiveMember
0.742s 16 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.018s 2 calls diffoscope.comparators.debian.DebControlMember
0.001s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink
0.001s 35 calls diffoscope.comparators.elf.ElfSection
0.000s 37 calls diffoscope.comparators.utils.libarchive.LibarchiveDirectory
0.000s 1 call abc.DotChangesFile
0.000s 8 calls diffoscope.comparators.elf.ElfCodeSection
0.000s 2 calls diffoscope.comparators.elf.ElfStringSection
0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection
main (total time: 61.965s)
--------------------------
61.890s 2 calls outputs
0.075s 1 call cleanup
open_archive (total time: 0.001s)
---------------------------------
0.000s 16 calls diffoscope.comparators.gzip.GzipContainer
0.000s 12 calls diffoscope.comparators.tar.TarContainer
0.000s 8 calls diffoscope.comparators.deb.DebContainer
0.000s 6 calls diffoscope.comparators.xz.XzContainer
0.000s 6 calls diffoscope.comparators.deb.DebTarContainer
output (total time: 30.793s)
----------------------------
29.108s 1 call html
1.686s 1 call text
recognizes (total time: 0.175s)
-------------------------------
0.121s 10 calls diffoscope.comparators.binary.FilesystemFile
0.024s 636 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.013s 630 calls diffoscope.comparators.elf.ElfSection
0.008s 334 calls diffoscope.comparators.utils.archive.ArchiveMember
0.004s 144 calls diffoscope.comparators.elf.ElfCodeSection
0.002s 18 calls diffoscope.comparators.elf.MonkeyPatchedElfSection
0.002s 88 calls diffoscope.comparators.debian.DebControlMember
0.001s 36 calls diffoscope.comparators.elf.ElfStringSection
0.000s 8 calls abc.DotChangesFile
Fri Feb 3 05:59:35 UTC 2017 E: r-cran-spatstat failed to build reproducibly in unstable on arm64.
mv: error writing ‘/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/unstable/arm64/r-cran-spatstat_1.48-0-1.diffoscope.txt’: No space left on device
mv: failed to extend ‘/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/unstable/arm64/r-cran-spatstat_1.48-0-1.diffoscope.txt’: No space left on device
Starting cleanup.
/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/r-cran-spatstat_1.48-0-1.rbuild.log:
gzip: /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/r-cran-spatstat_1.48-0-1.rbuild.log.gz: No space left on device
Fri 3 Feb 05:59:35 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-nelv5ED7, which will now be removed.
Build step 'Execute shell' marked build as failure
More information about the Qa-jenkins-scm
mailing list