[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_armhf_21 #16849

jenkins at jenkins.debian.net jenkins at jenkins.debian.net
Fri Feb 3 06:57:35 UTC 2017 

https://jenkins.debian.net/job/reproducible_builder_armhf_21/16849/------------------------------------------
[...truncated 131.65 KB...]
 I: pbuilder: network access will be disabled during build
-I: Current time: Thu Feb  2 18:49:45 -12 2017
-I: pbuilder-time-stamp: 1486104585
+I: Current time: Fri Feb  3 20:53:51 +14 2017
+I: pbuilder-time-stamp: 1486104831
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
 I: copying local configuration
@@ -19,7 +19,7 @@
 I: Extracting source
 gpgv: unknown type of key resource 'trustedkeys.kbx'
 gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
-gpgv: Signature made Wed Nov 23 07:12:10 2016 -12
+gpgv: Signature made Thu Nov 24 09:12:10 2016 +14
 gpgv:                using RSA key 578A0494D1C646D1
 gpgv: Can't check signature: No public key
 dpkg-source: warning: failed to verify signature on ./parsnp_1.2+dfsg-3.dsc
@@ -35,6 +35,18 @@
 dpkg-source: info: applying drop_m64.patch
 dpkg-source: info: applying fix_build_with_as-needed.patch
 I: Installing the build-deps
+I: user script /srv/workspace/pbuilder/20426/tmp/hooks/D01_modify_environment starting
+disorder-fs debug: Running on odxu4c.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
+Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
+Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
+Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/20426/tmp/hooks/D01_modify_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -135,7 +147,7 @@
 Get: 53 http://ftp.us.debian.org/debian unstable/main armhf python-all-dev armhf 2.7.13-2 [962 B]
 Get: 54 http://ftp.us.debian.org/debian unstable/main armhf python-pkg-resources all 33.1.1-1 [166 kB]
 Get: 55 http://ftp.us.debian.org/debian unstable/main armhf python-setuptools all 33.1.1-1 [297 kB]
-Fetched 56.1 MB in 5s (9918 kB/s)
+Fetched 56.1 MB in 4s (11.6 MB/s)
 debconf: delaying package configuration, since apt-utils is not installed
 Selecting previously unselected package groff-base.
 (Reading database ... (Reading database ... 5%(Reading database ... 10%(Reading database ... 15%(Reading database ... 20%(Reading database ... 25%(Reading database ... 30%(Reading database ... 35%(Reading database ... 40%(Reading database ... 45%(Reading database ... 50%(Reading database ... 55%(Reading database ... 60%(Reading database ... 65%(Reading database ... 70%(Reading database ... 75%(Reading database ... 80%(Reading database ... 85%(Reading database ... 90%(Reading database ... 95%(Reading database ... 100%(Reading database ... 18363 files and directories currently installed.)
@@ -380,13 +392,15 @@
 fakeroot is already the newest version (1.21-3.1).
 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 I: Building the package
-I: Running cd /build/1st/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b --buildinfo-id=armhf -rfakeroot
+I: user script /srv/workspace/pbuilder/20426/tmp/hooks/A01_modfiy_src_dir starting
+I: user script /srv/workspace/pbuilder/20426/tmp/hooks/A01_modfiy_src_dir finished
+I: Running cd /build/parsnp-1.2+dfsg/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b --buildinfo-id=armhf -rfakeroot
 dpkg-buildpackage: warning: --buildinfo-id is deprecated, it is without effect
 dpkg-buildpackage: info: source package parsnp
 dpkg-buildpackage: info: source version 1.2+dfsg-3
 dpkg-buildpackage: info: source distribution unstable
 dpkg-buildpackage: info: source changed by Andreas Tille <tille at debian.org>
- dpkg-source --before-build parsnp-1.2+dfsg
+ dpkg-source --before-build 2nd
 dpkg-buildpackage: info: host architecture armhf
  fakeroot debian/rules clean
 dh clean --with python2 --with autoreconf
@@ -423,7 +437,7 @@
 automake: project, to avoid future incompatibilities.
 src/Makefile.am: installing './depcomp'
    debian/rules override_dh_auto_configure
-make[1]: Entering directory '/build/1st/parsnp-1.2+dfsg'
+make[1]: Entering directory '/build/parsnp-1.2+dfsg/2nd'
 dh_auto_configure -- --with-libmuscle=/usr/include/libMUSCLE-3.7
 	./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --with-libmuscle=/usr/include/libMUSCLE-3.7
 configure: WARNING: unrecognized options: --disable-maintainer-mode
@@ -472,65 +486,65 @@
 config.status: creating src/Makefile
 config.status: executing depfiles commands
 configure: WARNING: unrecognized options: --disable-maintainer-mode
-make[1]: Leaving directory '/build/1st/parsnp-1.2+dfsg'
+make[1]: Leaving directory '/build/parsnp-1.2+dfsg/2nd'
    dh_auto_build
-	make -j4
-make[1]: Entering directory '/build/1st/parsnp-1.2+dfsg'
+	make -j8
+make[1]: Entering directory '/build/parsnp-1.2+dfsg/2nd'
 Making all in src
-make[2]: Entering directory '/build/1st/parsnp-1.2+dfsg/src'
-g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I.   -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/1st/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-MuscleInterface.o `test -f 'MuscleInterface.cpp' || echo './'`MuscleInterface.cpp
-g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I.   -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/1st/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-parsnp.o `test -f 'parsnp.cpp' || echo './'`parsnp.cpp
-g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I.   -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/1st/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-LCB.o `test -f 'LCB.cpp' || echo './'`LCB.cpp
-g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I.   -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/1st/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-LCR.o `test -f 'LCR.cpp' || echo './'`LCR.cpp
-g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I.   -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/1st/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-TMum.o `test -f 'TMum.cpp' || echo './'`TMum.cpp
-g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I.   -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/1st/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-Converter.o `test -f 'Converter.cpp' || echo './'`Converter.cpp
-g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I.   -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/1st/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-iniFile.o `test -f './ext/iniFile.cpp' || echo './'`./ext/iniFile.cpp
-g++ -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/1st/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -Wl,-z,relro -Wl,-z,now -o parsnp parsnp-MuscleInterface.o parsnp-parsnp.o parsnp-LCB.o parsnp-LCR.o parsnp-TMum.o parsnp-Converter.o parsnp-iniFile.o  -lgomp -lstdc++ -lpthread -L/usr/include/libMUSCLE-3.7/lib -lMUSCLE-3.7
-make[2]: Leaving directory '/build/1st/parsnp-1.2+dfsg/src'
-make[2]: Entering directory '/build/1st/parsnp-1.2+dfsg'
+make[2]: Entering directory '/build/parsnp-1.2+dfsg/2nd/src'
+g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I.   -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/parsnp-1.2+dfsg/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-MuscleInterface.o `test -f 'MuscleInterface.cpp' || echo './'`MuscleInterface.cpp
+g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I.   -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/parsnp-1.2+dfsg/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-parsnp.o `test -f 'parsnp.cpp' || echo './'`parsnp.cpp
+g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I.   -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/parsnp-1.2+dfsg/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-LCB.o `test -f 'LCB.cpp' || echo './'`LCB.cpp
+g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I.   -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/parsnp-1.2+dfsg/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-LCR.o `test -f 'LCR.cpp' || echo './'`LCR.cpp
+g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I.   -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/parsnp-1.2+dfsg/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-TMum.o `test -f 'TMum.cpp' || echo './'`TMum.cpp
+g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I.   -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/parsnp-1.2+dfsg/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-Converter.o `test -f 'Converter.cpp' || echo './'`Converter.cpp
+g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I.   -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/parsnp-1.2+dfsg/2nd=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-iniFile.o `test -f './ext/iniFile.cpp' || echo './'`./ext/iniFile.cpp
+g++ -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/build/parsnp-1.2+dfsg/2nd=. -fstack-protector-strong -Wformat -Werror=format-security  -Wl,-z,relro -Wl,-z,now -o parsnp parsnp-MuscleInterface.o parsnp-parsnp.o parsnp-LCB.o parsnp-LCR.o parsnp-TMum.o parsnp-Converter.o parsnp-iniFile.o  -lgomp -lstdc++ -lpthread -L/usr/include/libMUSCLE-3.7/lib -lMUSCLE-3.7
+make[2]: Leaving directory '/build/parsnp-1.2+dfsg/2nd/src'
+make[2]: Entering directory '/build/parsnp-1.2+dfsg/2nd'
 make[2]: Nothing to be done for 'all-am'.
-make[2]: Leaving directory '/build/1st/parsnp-1.2+dfsg'
-make[1]: Leaving directory '/build/1st/parsnp-1.2+dfsg'
+make[2]: Leaving directory '/build/parsnp-1.2+dfsg/2nd'
+make[1]: Leaving directory '/build/parsnp-1.2+dfsg/2nd'
    dh_auto_test
-	make -j4 check VERBOSE=1
-make[1]: Entering directory '/build/1st/parsnp-1.2+dfsg'
+	make -j8 check VERBOSE=1
+make[1]: Entering directory '/build/parsnp-1.2+dfsg/2nd'
 Making check in src
-make[2]: Entering directory '/build/1st/parsnp-1.2+dfsg/src'
+make[2]: Entering directory '/build/parsnp-1.2+dfsg/2nd/src'
 make[2]: Nothing to be done for 'check'.
-make[2]: Leaving directory '/build/1st/parsnp-1.2+dfsg/src'
-make[2]: Entering directory '/build/1st/parsnp-1.2+dfsg'
+make[2]: Leaving directory '/build/parsnp-1.2+dfsg/2nd/src'
+make[2]: Entering directory '/build/parsnp-1.2+dfsg/2nd'
 make[2]: Nothing to be done for 'check-am'.
-make[2]: Leaving directory '/build/1st/parsnp-1.2+dfsg'
-make[1]: Leaving directory '/build/1st/parsnp-1.2+dfsg'
+make[2]: Leaving directory '/build/parsnp-1.2+dfsg/2nd'
+make[1]: Leaving directory '/build/parsnp-1.2+dfsg/2nd'
    create-stamp debian/debhelper-build-stamp
  fakeroot debian/rules binary
 dh binary --with python2 --with autoreconf
    dh_testroot
    dh_prep
    debian/rules override_dh_auto_install
-make[1]: Entering directory '/build/1st/parsnp-1.2+dfsg'
+make[1]: Entering directory '/build/parsnp-1.2+dfsg/2nd'
 dh_auto_install
-	make -j4 install DESTDIR=/build/1st/parsnp-1.2\+dfsg/debian/parsnp AM_UPDATE_INFO_DIR=no
-make[2]: Entering directory '/build/1st/parsnp-1.2+dfsg'
+	make -j8 install DESTDIR=/build/parsnp-1.2\+dfsg/2nd/debian/parsnp AM_UPDATE_INFO_DIR=no
+make[2]: Entering directory '/build/parsnp-1.2+dfsg/2nd'
 Making install in src
-make[3]: Entering directory '/build/1st/parsnp-1.2+dfsg/src'
-make[4]: Entering directory '/build/1st/parsnp-1.2+dfsg/src'
+make[3]: Entering directory '/build/parsnp-1.2+dfsg/2nd/src'
+make[4]: Entering directory '/build/parsnp-1.2+dfsg/2nd/src'
 make[4]: Nothing to be done for 'install-data-am'.
- /bin/mkdir -p '/build/1st/parsnp-1.2+dfsg/debian/parsnp/usr/bin'
-  /usr/bin/install -c parsnp '/build/1st/parsnp-1.2+dfsg/debian/parsnp/usr/bin'
-make[4]: Leaving directory '/build/1st/parsnp-1.2+dfsg/src'
-make[3]: Leaving directory '/build/1st/parsnp-1.2+dfsg/src'
-make[3]: Entering directory '/build/1st/parsnp-1.2+dfsg'
-make[4]: Entering directory '/build/1st/parsnp-1.2+dfsg'
+ /bin/mkdir -p '/build/parsnp-1.2+dfsg/2nd/debian/parsnp/usr/bin'
+  /usr/bin/install -c parsnp '/build/parsnp-1.2+dfsg/2nd/debian/parsnp/usr/bin'
+make[4]: Leaving directory '/build/parsnp-1.2+dfsg/2nd/src'
+make[3]: Leaving directory '/build/parsnp-1.2+dfsg/2nd/src'
+make[3]: Entering directory '/build/parsnp-1.2+dfsg/2nd'
+make[4]: Entering directory '/build/parsnp-1.2+dfsg/2nd'
 make[4]: Nothing to be done for 'install-exec-am'.
 make[4]: Nothing to be done for 'install-data-am'.
-make[4]: Leaving directory '/build/1st/parsnp-1.2+dfsg'
-make[3]: Leaving directory '/build/1st/parsnp-1.2+dfsg'
-make[2]: Leaving directory '/build/1st/parsnp-1.2+dfsg'
+make[4]: Leaving directory '/build/parsnp-1.2+dfsg/2nd'
+make[3]: Leaving directory '/build/parsnp-1.2+dfsg/2nd'
+make[2]: Leaving directory '/build/parsnp-1.2+dfsg/2nd'
 # The actual user interface is the Python script so move the binary to /usr/lib
 mkdir -p debian/parsnp/usr/lib/parsnp
 mv debian/parsnp/usr/bin/parsnp debian/parsnp/usr/lib/parsnp
-make[1]: Leaving directory '/build/1st/parsnp-1.2+dfsg'
+make[1]: Leaving directory '/build/parsnp-1.2+dfsg/2nd'
    dh_install
    dh_installdocs
    dh_installchangelogs
@@ -543,10 +557,10 @@
    dh_strip_nondeterminism
    dh_compress
    debian/rules override_dh_fixperms
-make[1]: Entering directory '/build/1st/parsnp-1.2+dfsg'
+make[1]: Entering directory '/build/parsnp-1.2+dfsg/2nd'
 dh_fixperms
 chmod -x debian/parsnp/usr/share/parsnp/template.ini
-make[1]: Leaving directory '/build/1st/parsnp-1.2+dfsg'
+make[1]: Leaving directory '/build/parsnp-1.2+dfsg/2nd'
    dh_strip
    dh_makeshlibs
    dh_shlibdeps
@@ -560,15 +574,17 @@
  dpkg-genbuildinfo --build=binary
  dpkg-genchanges --build=binary >../parsnp_1.2+dfsg-3_armhf.changes
 dpkg-genchanges: info: binary-only upload (no source code included)
- dpkg-source --after-build parsnp-1.2+dfsg
+ dpkg-source --after-build 2nd
 dpkg-buildpackage: info: binary-only upload (no source included)
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/20426/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/20426/tmp/hooks/B01_cleanup finished
 I: unmounting /dev/shm filesystem
 I: unmounting dev/pts filesystem
 I: unmounting run/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/14633 and its subdirectories
-I: Current time: Thu Feb  2 18:53:31 -12 2017
-I: pbuilder-time-stamp: 1486104811
+I: removing directory /srv/workspace/pbuilder/20426 and its subdirectories
+I: Current time: Fri Feb  3 20:57:20 +14 2017
+I: pbuilder-time-stamp: 1486105040

Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/parsnp_1.2+dfsg-3.diff:	 83.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/parsnp_1.2+dfsg-3.diff.gz
b2/build.log:	 80.4%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log:	 80.6%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/parsnp_1.2+dfsg-3.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-x1Ieww80/tmp.jmdHs1aeZz
+ mv /srv/reproducible-results/rbuild-debian-x1Ieww80/tmp.jmdHs1aeZz /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/armhf/parsnp_1.2+dfsg-3.rbuild.log
mv: error writing ‘/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/armhf/parsnp_1.2+dfsg-3.rbuild.log’: No space left on device
mv: failed to extend ‘/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/armhf/parsnp_1.2+dfsg-3.rbuild.log’: No space left on device
+ cleanup_all
+ echo 'Starting cleanup.'
Starting cleanup.
+ '[' 0 = 1 ']'
+ '[' '!' -z '' ']'
+ '[' '!' -f /srv/reproducible-results/rbuild-debian-x1Ieww80/tmp.jmdHs1aeZz ']'
+ gzip -9fvn /srv/reproducible-results/rbuild-debian-x1Ieww80/tmp.jmdHs1aeZz
/srv/reproducible-results/rbuild-debian-x1Ieww80/tmp.jmdHs1aeZz:	 77.2% -- replaced with /srv/reproducible-results/rbuild-debian-x1Ieww80/tmp.jmdHs1aeZz.gz
+ '[' master = master ']'
+ gen_package_html parsnp
+ cd /srv/jenkins/bin
+ python3 -c 'import reproducible_html_packages as rep
pkg = rep.Package('\''parsnp'\'', no_notes=True)
rep.gen_packages_html([pkg], no_clean=True)'
INFO: Starting at 2017-02-03 06:57:35.231479
CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/armhf/parsnp_1.2+dfsg-3_armhf.buildinfo
INFO: Finished at 2017-02-03 06:57:35.669295, took: 0:00:00.437833
+ cd -
+ cd
+ rm -r /srv/reproducible-results/rbuild-debian-x1Ieww80
+ echo 'All cleanup done.'
All cleanup done.
Fri  3 Feb 06:57:35 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-cOKwMmDw, which will now be removed.
Build step 'Execute shell' marked build as failure

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