[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_arm64_32 #4372
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Fri Feb 3 08:15:21 UTC 2017
https://jenkins.debian.net/job/reproducible_builder_arm64_32/4372/------------------------------------------
[...truncated 590.02 KB...]
+make[2]: Leaving directory '/build/tvc-5.0.3+dfsg/2nd/obj-aarch64-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/bin/tvc
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/bin/tvcassembly
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/bin/tvcutils
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/bin/variant_caller_pipeline.py
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/pluginMedia
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_somatic_lowstringency_p1_parameters.json
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/targetseq_germline_lowstringency_p1_parameters.json
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseq_germline_lowstringency_pgm_parameters.json
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_germline_lowstringency_p1_parameters.json
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/pgx4_germline_lowstringency_pgm_parameters.json
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseq_somatic_lowstringency_pgm_parameters.json
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ocp_somatic_lowstringency_pgm_parameters.json
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/sse
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/sse/motifset.txt
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/sse/ampliseqexome_germline_p1_hiq_motifset.txt
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/examples
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/examples/example1
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/examples/example1/reference.fasta.fai
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/examples/example1/reference.dict
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/examples/example1/test_merged_plain.bed
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/examples/example1/test.bam
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/examples/example1/test_original.bed
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/examples/example1/test.bed
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/examples/example1/expected
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/examples/example1/expected/small_variants.vcf
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/examples/example1/expected/TSVC_variants.vcf
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/examples/example1/reference.fasta
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/examples/example1/test.bam.bai
--- Installing: /build/1st/tvc-5.0.3+dfsg/debian/tvc/usr/share/TVC/examples/example1/test_unmerged_detail.bed
-make[1]: Leaving directory '/build/1st/tvc-5.0.3+dfsg/obj-aarch64-linux-gnu'
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/bin/tvc
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/bin/tvcassembly
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/bin/tvcutils
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/bin/variant_caller_pipeline.py
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/pluginMedia
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_somatic_lowstringency_p1_parameters.json
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/targetseq_germline_lowstringency_p1_parameters.json
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseq_germline_lowstringency_pgm_parameters.json
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_germline_lowstringency_p1_parameters.json
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/pgx4_germline_lowstringency_pgm_parameters.json
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ampliseq_somatic_lowstringency_pgm_parameters.json
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/pluginMedia/parameter_sets/ocp_somatic_lowstringency_pgm_parameters.json
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/sse
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/sse/motifset.txt
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/sse/ampliseqexome_germline_p1_hiq_motifset.txt
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/examples
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/examples/example1
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/examples/example1/reference.fasta.fai
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/examples/example1/reference.dict
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/examples/example1/test_merged_plain.bed
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/examples/example1/test.bam
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/examples/example1/test_original.bed
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/examples/example1/test.bed
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/examples/example1/expected
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/examples/example1/expected/small_variants.vcf
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/examples/example1/expected/TSVC_variants.vcf
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/examples/example1/reference.fasta
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/examples/example1/test.bam.bai
+-- Installing: /build/tvc-5.0.3+dfsg/2nd/debian/tvc/usr/share/TVC/examples/example1/test_unmerged_detail.bed
+make[1]: Leaving directory '/build/tvc-5.0.3+dfsg/2nd/obj-aarch64-linux-gnu'
dh_installdocs -O--parallel
dh_installchangelogs -O--parallel
dh_perl -O--parallel
@@ -953,15 +964,17 @@
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../tvc_5.0.3+dfsg-1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
- dpkg-source --after-build tvc-5.0.3+dfsg
+ dpkg-source --after-build 2nd
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/1910/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/1910/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/2276 and its subdirectories
-I: Current time: Thu Mar 8 02:28:20 -12 2018
-I: pbuilder-time-stamp: 1520519300
+I: removing directory /srv/workspace/pbuilder/1910 and its subdirectories
+I: Current time: Fri Feb 3 22:12:32 +14 2017
+I: pbuilder-time-stamp: 1486109552
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/tvc_5.0.3+dfsg-1.diff: 94.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/tvc_5.0.3+dfsg-1.diff.gz
b2/build.log: 90.6%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 90.8%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/arm64/tvc_5.0.3+dfsg-1.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-F9jiLJEV/tmp.nN1LpsxiF2
+ mv /srv/reproducible-results/rbuild-debian-F9jiLJEV/tmp.nN1LpsxiF2 /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/tvc_5.0.3+dfsg-1.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/tvc_5.0.3+dfsg-1.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ filter_changes_files
+ sed -i -e '/^ [a-f0-9]\{32,64\} .*\.buildinfo$/d' b1/tvc_5.0.3+dfsg-1_arm64.changes b2/tvc_5.0.3+dfsg-1_arm64.changes
+ call_diffoscope_on_changes_files
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-F9jiLJEV
+ local TMPLOG=/srv/reproducible-results/rbuild-debian-F9jiLJEV/tmp.Ub5ifd1lzq
+ local TIMEOUT=120m
+ DBDSUITE=experimental
+ '[' experimental = experimental ']'
+ DBDSUITE=unstable
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-F9jiLJEV -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/rbuild-debian-F9jiLJEV/dbd-tmp-albnRGM
++ schroot --directory /srv/reproducible-results/rbuild-debian-F9jiLJEV -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 70'
++ echo diffoscope 70
++ grep '^E: 15binfmt: update-binfmts: unable to open'
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ log_info 'diffoscope 70 will be used to compare the two builds:'
+ _log I: 'diffoscope 70 will be used to compare the two builds:'
+ local prefix=I:
+ shift 1
+ tee -a /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/tvc_5.0.3+dfsg-1.rbuild.log
++ date -u
+ echo -e 'Fri Feb 3 08:12:38 UTC 2017 I: diffoscope 70 will be used to compare the two builds:'
Fri Feb 3 08:12:38 UTC 2017 I: diffoscope 70 will be used to compare the two builds:
+ set +e
+ set -x
+ timeout 120m nice schroot --directory /srv/reproducible-results/rbuild-debian-F9jiLJEV -c source:jenkins-reproducible-unstable-diffoscope -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian-F9jiLJEV/dbd-tmp-albnRGM ; diffoscope --html /srv/reproducible-results/rbuild-debian-F9jiLJEV/tvc_5.0.3+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian-F9jiLJEV/tvc_5.0.3+dfsg-1.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-F9jiLJEV/b1/tvc_5.0.3+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian-F9jiLJEV/b2/tvc_5.0.3+dfsg-1_arm64.changes'
+ RESULT=1
++ grep '^E: 15binfmt: update-binfmts: unable to open' /srv/reproducible-results/rbuild-debian-F9jiLJEV/tmp.Ub5ifd1lzq
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ false
+ set +x
Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian-F9jiLJEV/tvc_5.0.3+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian-F9jiLJEV/tvc_5.0.3+dfsg-1.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-F9jiLJEV/b1/tvc_5.0.3+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian-F9jiLJEV/b2/tvc_5.0.3+dfsg-1_arm64.changes
============================================================================================================================================================================================================================================================================================================================================================================================================
close_archive (total time: 0.001s)
----------------------------------
0.000s 10 calls diffoscope.comparators.deb.DebTarContainer
0.000s 10 calls diffoscope.comparators.xz.XzContainer
0.000s 12 calls diffoscope.comparators.tar.TarContainer
0.000s 12 calls diffoscope.comparators.gzip.GzipContainer
0.000s 8 calls diffoscope.comparators.deb.DebContainer
command (total time: 161.965s)
------------------------------
122.356s 2824 calls readelf
22.655s 264 calls objdump
7.146s 6 calls objcopy
5.469s 10 calls xz
4.103s 302 calls diff
0.127s 14 calls cmp
0.108s 12 calls gzip
0.001s 10 calls cmp (internal)
compare_files (cumulative) (total time: 822.516s)
-------------------------------------------------
159.667s 1 call abc.DotChangesFile
159.489s 2 calls abc.DebFile
158.998s 2 calls abc.XzFile
157.406s 2 calls abc.DebDataTarFile
155.681s 6 calls abc.ElfFile
23.732s 24 calls diffoscope.comparators.elf.ElfCodeSection
4.699s 113 calls diffoscope.comparators.elf.ElfSection
2.395s 6 calls diffoscope.comparators.elf.ElfStringSection
0.173s 2 calls abc.GzipFile
0.115s 3 calls diffoscope.comparators.elf.MonkeyPatchedElfSection
0.110s 2 calls abc.TarFile
0.027s 1 call abc.TextFile
0.023s 2 calls abc.Md5sumsFile
0.000s 22 calls diffoscope.comparators.utils.libarchive.LibarchiveDirectory
container_extract (total time: 6.893s)
--------------------------------------
5.471s 10 calls diffoscope.comparators.xz.XzContainer
0.798s 18 calls diffoscope.comparators.deb.DebTarContainer
0.398s 26 calls diffoscope.comparators.deb.DebContainer
0.116s 16 calls diffoscope.comparators.tar.TarContainer
0.110s 12 calls diffoscope.comparators.gzip.GzipContainer
has_same_content_as (total time: 1.997s)
----------------------------------------
1.618s 4 calls diffoscope.comparators.utils.archive.ArchiveMember
0.358s 16 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.016s 2 calls diffoscope.comparators.debian.DebControlMember
0.002s 113 calls diffoscope.comparators.elf.ElfSection
0.001s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink
0.000s 24 calls diffoscope.comparators.elf.ElfCodeSection
0.000s 22 calls diffoscope.comparators.utils.libarchive.LibarchiveDirectory
0.000s 1 call abc.DotChangesFile
0.000s 6 calls diffoscope.comparators.elf.ElfStringSection
0.000s 3 calls diffoscope.comparators.elf.MonkeyPatchedElfSection
main (total time: 161.507s)
---------------------------
161.425s 2 calls outputs
0.082s 1 call cleanup
open_archive (total time: 0.001s)
---------------------------------
0.000s 12 calls diffoscope.comparators.tar.TarContainer
0.000s 12 calls diffoscope.comparators.gzip.GzipContainer
0.000s 8 calls diffoscope.comparators.deb.DebContainer
0.000s 10 calls diffoscope.comparators.deb.DebTarContainer
0.000s 10 calls diffoscope.comparators.xz.XzContainer
output (total time: 1.686s)
---------------------------
1.682s 1 call html
0.004s 1 call text
recognizes (total time: 0.162s)
-------------------------------
0.069s 10 calls diffoscope.comparators.binary.FilesystemFile
0.042s 2034 calls diffoscope.comparators.elf.ElfSection
0.024s 678 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.008s 432 calls diffoscope.comparators.elf.ElfCodeSection
0.008s 54 calls diffoscope.comparators.elf.MonkeyPatchedElfSection
0.006s 294 calls diffoscope.comparators.utils.archive.ArchiveMember
0.003s 88 calls diffoscope.comparators.debian.DebControlMember
0.003s 108 calls diffoscope.comparators.elf.ElfStringSection
0.000s 8 calls abc.DotChangesFile
Fri Feb 3 08:15:21 UTC 2017 E: tvc failed to build reproducibly in experimental on arm64.
mv: error writing ‘/var/lib/jenkins/userContent/reproducible/debian/dbd/experimental/arm64/tvc_5.0.3+dfsg-1.diffoscope.html’: No space left on device
mv: failed to extend ‘/var/lib/jenkins/userContent/reproducible/debian/dbd/experimental/arm64/tvc_5.0.3+dfsg-1.diffoscope.html’: No space left on device
Starting cleanup.
/var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/tvc_5.0.3+dfsg-1.rbuild.log:
gzip: /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/tvc_5.0.3+dfsg-1.rbuild.log.gz: No space left on device
Fri 3 Feb 08:15:21 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-b4a8n8L7, which will now be removed.
Build step 'Execute shell' marked build as failure
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