[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_armhf_28 #16378

Thu Feb 16 06:12:46 UTC 2017

https://jenkins.debian.net/job/reproducible_builder_armhf_28/16378/------------------------------------------
[...truncated 216.99 KB...]
Adding cdbs dependencies to debian/r-cran-phylobase.substvars
dh_installdirs -pr-cran-phylobase \
	
chmod -x /build/r-cran-phylobase-0.8.2/debian/r-cran-phylobase/usr/lib/R/site-library/phylobase/nexusfiles/co1.nex
dh_installdocs -pr-cran-phylobase 
dh_installexamples -pr-cran-phylobase 
dh_installman -pr-cran-phylobase 
dh_installinfo -pr-cran-phylobase 
dh_installmenu -pr-cran-phylobase 
dh_installcron -pr-cran-phylobase 
dh_systemd_enable -pr-cran-phylobase 
dh_installinit -pr-cran-phylobase 
dh_installdebconf -pr-cran-phylobase 
dh_installemacsen -pr-cran-phylobase 
dh_installcatalogs -pr-cran-phylobase 
dh_installpam -pr-cran-phylobase 
dh_installlogrotate -pr-cran-phylobase 
dh_installlogcheck -pr-cran-phylobase 
dh_installchangelogs -pr-cran-phylobase 
dh_installudev -pr-cran-phylobase 
dh_lintian -pr-cran-phylobase 
dh_bugfiles -pr-cran-phylobase 
dh_install -pr-cran-phylobase 
dh_systemd_start -pr-cran-phylobase 
dh_link -pr-cran-phylobase 
dh_installmime -pr-cran-phylobase 
dh_installgsettings -pr-cran-phylobase 
dh_strip -pr-cran-phylobase  
dh_strip_nondeterminism -pr-cran-phylobase 
dh_compress -pr-cran-phylobase 
dh_fixperms -pr-cran-phylobase 
dh_makeshlibs -pr-cran-phylobase  
dh_installdeb -pr-cran-phylobase 
dh_perl -pr-cran-phylobase 
dh_shlibdeps -pr-cran-phylobase 
dpkg-shlibdeps: warning: tried to merge the same object (ld-linux-armhf.so.3) twice in a symfile
dh_gencontrol -pr-cran-phylobase  
dh_md5sums -pr-cran-phylobase 
dh_builddeb -pr-cran-phylobase 
dpkg-deb: building package 'r-cran-phylobase-dbgsym' in '../r-cran-phylobase-dbgsym_0.8.2-1_armhf.deb'.
dpkg-deb: building package 'r-cran-phylobase' in '../r-cran-phylobase_0.8.2-1_armhf.deb'.
 dpkg-genbuildinfo --build=binary
 dpkg-genchanges --build=binary >../r-cran-phylobase_0.8.2-1_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build r-cran-phylobase-0.8.2
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
I: user script /srv/workspace/pbuilder/4272/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/4272/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/4272 and its subdirectories
I: Current time: Thu Feb 16 20:12:30 +14 2017
I: pbuilder-time-stamp: 1487225550
Thu Feb 16 06:12:30 UTC 2017  I: Signing ./b2/r-cran-phylobase_0.8.2-1_armhf.buildinfo as r-cran-phylobase_0.8.2-1_armhf.buildinfo.asc
+ PRESULT=0
+ set -e
+ '[' 0 -eq 124 ']'
+ false
+ set +x
Thu Feb 16 06:12:30 UTC 2017  I: Signed ./b2/r-cran-phylobase_0.8.2-1_armhf.buildinfo as ./b2/r-cran-phylobase_0.8.2-1_armhf.buildinfo.asc
Thu Feb 16 06:12:30 UTC 2017 - build #2 for r-cran-phylobase/testing/armhf on ff2b done.
Starting cleanup.
All cleanup done.
Thu Feb 16 06:12:30 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-YST3Hssg, which will now be removed.
/srv/reproducible-results/rbuild-debian-SW0hkqf0/tmp.yd0i5t7Vi0:	 58.7% -- replaced with /srv/reproducible-results/rbuild-debian-SW0hkqf0/tmp.yd0i5t7Vi0.gz
/srv/reproducible-results/rbuild-debian-2WUf5Mt7:
total 88
drwxr-xr-x 2 jenkins jenkins  4096 Feb 16 06:07 b1
drwxr-xr-x 2 jenkins jenkins  4096 Feb 16 06:12 b2
-rw-r--r-- 1 jenkins jenkins  2156 Apr  9  2016 r-cran-phylobase_0.8.2-1.dsc
-rw------- 1 jenkins jenkins 73150 Feb 16 06:07 tmp.oZ9VI249Yr

/srv/reproducible-results/rbuild-debian-2WUf5Mt7/b1:
total 1120
-rw-r--r-- 1 jenkins jenkins  69514 Feb 16 06:07 build.log
-rw-r--r-- 1 jenkins jenkins 395930 Feb 16 06:07 r-cran-phylobase-dbgsym_0.8.2-1_armhf.deb
-rw-r--r-- 1 jenkins jenkins   8388 Feb 16 06:07 r-cran-phylobase_0.8.2-1_armhf.buildinfo
-rw-r--r-- 1 jenkins jenkins   9254 Feb 16 06:07 r-cran-phylobase_0.8.2-1_armhf.buildinfo.asc
-rw-r--r-- 1 jenkins jenkins   1438 Feb 16 06:07 r-cran-phylobase_0.8.2-1_armhf.changes
-rw-r--r-- 1 jenkins jenkins 637994 Feb 16 06:07 r-cran-phylobase_0.8.2-1_armhf.deb

/srv/reproducible-results/rbuild-debian-2WUf5Mt7/b2:
total 1124
-rw-r--r-- 1 jenkins jenkins  70662 Feb 16 06:12 build.log
-rw-r--r-- 1 jenkins jenkins 395930 Feb 16 06:12 r-cran-phylobase-dbgsym_0.8.2-1_armhf.deb
-rw-r--r-- 1 jenkins jenkins   8388 Feb 16 06:12 r-cran-phylobase_0.8.2-1_armhf.buildinfo
-rw-r--r-- 1 jenkins jenkins   9254 Feb 16 06:12 r-cran-phylobase_0.8.2-1_armhf.buildinfo.asc
-rw-r--r-- 1 jenkins jenkins   1438 Feb 16 06:12 r-cran-phylobase_0.8.2-1_armhf.changes
-rw-r--r-- 1 jenkins jenkins 637994 Feb 16 06:12 r-cran-phylobase_0.8.2-1_armhf.deb
Thu Feb 16 06:12:39 UTC 2017  I: Deleting $TMPDIR on ff2b-armhf-rb.debian.net.
Thu Feb 16 06:12:42 UTC 2017  I: r-cran-phylobase_0.8.2-1_armhf.changes:
Format: 1.8
Date: Sat, 09 Apr 2016 13:54:52 +0200
Source: r-cran-phylobase
Binary: r-cran-phylobase
Architecture: armhf
Version: 0.8.2-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Description:
 r-cran-phylobase - GNU R base package for phylogenetic structures and comparative da
Closes: 820520
Changes:
 r-cran-phylobase (0.8.2-1) unstable; urgency=low
 .
   * Initial release (Closes: #820520)
Checksums-Sha1:
 578af40554dde15291ccdb369278609463756512 395930 r-cran-phylobase-dbgsym_0.8.2-1_armhf.deb
 cc66eb7e54f26216d70defc4df6a08f0f550cb57 8388 r-cran-phylobase_0.8.2-1_armhf.buildinfo
 b279746fa78516d067ab49cad5fcfaaa825c9578 637994 r-cran-phylobase_0.8.2-1_armhf.deb
Checksums-Sha256:
 2c26ea1edc99ceac242e324c1bf5775ea2f2129b159a6d47eb2436228639fe4b 395930 r-cran-phylobase-dbgsym_0.8.2-1_armhf.deb
 ef0a985f90b54748531447541be0c20b341cbcb1e09ff2a4dcd240360440e751 8388 r-cran-phylobase_0.8.2-1_armhf.buildinfo
 5f0b0185a45add96ab59ec87b3070e90352ddf89026152075ee78cbbb36ea975 637994 r-cran-phylobase_0.8.2-1_armhf.deb
Files:
 5aabc60b212f140432adc7891d91bf5b 395930 debug extra r-cran-phylobase-dbgsym_0.8.2-1_armhf.deb
 37dd57cdbfda682fc89bb348f1c4065b 8388 gnu-r optional r-cran-phylobase_0.8.2-1_armhf.buildinfo
 235c97f79dc329e514742fce6fe556a5 637994 gnu-r optional r-cran-phylobase_0.8.2-1_armhf.deb
removed ‘/var/lib/jenkins/userContent/reproducible/debian/rbuild/testing/armhf/r-cran-phylobase_0.8.2-1.rbuild.log.gz’
removed ‘/var/lib/jenkins/userContent/reproducible/debian/logs/testing/armhf/r-cran-phylobase_0.8.2-1.build1.log.gz’
removed ‘/var/lib/jenkins/userContent/reproducible/debian/logs/testing/armhf/r-cran-phylobase_0.8.2-1.build2.log.gz’
removed ‘/var/lib/jenkins/userContent/reproducible/debian/buildinfo/testing/armhf/r-cran-phylobase_0.8.2-1_armhf.buildinfo’
removed ‘/var/lib/jenkins/userContent/reproducible/debian/logdiffs/testing/armhf/r-cran-phylobase_0.8.2-1.diff.gz’
Diff of the two buildlogs:

--

--- b1/build.log	2017-02-16 06:07:04.753383613 +0000
+++ b2/build.log	2017-02-16 06:12:35.769761073 +0000
@@ -1,7 +1,7 @@
 I: using fakeroot in build.
 I: pbuilder: network access will be disabled during build
-I: Current time: Wed Feb 15 18:03:49 -12 2017
-I: pbuilder-time-stamp: 1487225029
+I: Current time: Thu Feb 16 20:07:25 +14 2017
+I: pbuilder-time-stamp: 1487225245
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/testing-reproducible-base.tgz]
 I: copying local configuration
@@ -19,7 +19,7 @@
 I: Extracting source
 gpgv: unknown type of key resource 'trustedkeys.kbx'
 gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error
-gpgv: Signature made Sat Apr  9 00:05:20 2016 -12
+gpgv: Signature made Sun Apr 10 02:05:20 2016 +14
 gpgv:                using RSA key 578A0494D1C646D1
 gpgv: Can't check signature: No public key
 dpkg-source: warning: failed to verify signature on ./r-cran-phylobase_0.8.2-1.dsc
@@ -27,6 +27,18 @@
 dpkg-source: info: unpacking r-cran-phylobase_0.8.2.orig.tar.gz
 dpkg-source: info: unpacking r-cran-phylobase_0.8.2-1.debian.tar.xz
 I: Installing the build-deps
+I: user script /srv/workspace/pbuilder/4272/tmp/hooks/D01_modify_environment starting
+disorder-fs debug: Running on ff2b.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
+Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
+Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
+Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/4272/tmp/hooks/D01_modify_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -248,7 +260,7 @@
 Get: 170 http://ftp.us.debian.org/debian testing/main armhf r-cran-uuid armhf 0.1.2-8 [14.5 kB]
 Get: 171 http://ftp.us.debian.org/debian testing/main armhf r-cran-tidyr armhf 0.6.1-1 [330 kB]
 Get: 172 http://ftp.us.debian.org/debian testing/main armhf r-cran-rnexml all 2.0.7-1 [337 kB]
-Fetched 107 MB in 11s (9342 kB/s)
+Fetched 107 MB in 12s (8412 kB/s)
 debconf: delaying package configuration, since apt-utils is not installed
 Selecting previously unselected package groff-base.
 (Reading database ... (Reading database ... 5%(Reading database ... 10%(Reading database ... 15%(Reading database ... 20%(Reading database ... 25%(Reading database ... 30%(Reading database ... 35%(Reading database ... 40%(Reading database ... 45%(Reading database ... 50%(Reading database ... 55%(Reading database ... 60%(Reading database ... 65%(Reading database ... 70%(Reading database ... 75%(Reading database ... 80%(Reading database ... 85%(Reading database ... 90%(Reading database ... 95%(Reading database ... 100%(Reading database ... 18368 files and directories currently installed.)
@@ -982,7 +994,9 @@
 fakeroot is already the newest version (1.21-3.1).
 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 I: Building the package
-I: Running cd /build/r-cran-phylobase-0.8.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b --buildinfo-id=armhf -rfakeroot
+I: user script /srv/workspace/pbuilder/4272/tmp/hooks/A01_modfiy_src_dir starting
+I: user script /srv/workspace/pbuilder/4272/tmp/hooks/A01_modfiy_src_dir finished
+I: Running cd /build/r-cran-phylobase-0.8.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b --buildinfo-id=armhf -rfakeroot
 dpkg-buildpackage: warning: --buildinfo-id is deprecated, it is without effect
 dpkg-buildpackage: info: source package r-cran-phylobase
 dpkg-buildpackage: info: source version 0.8.2-1
@@ -1105,12 +1119,14 @@
  dpkg-source --after-build r-cran-phylobase-0.8.2
 dpkg-buildpackage: info: binary-only upload (no source included)
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/4272/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/4272/tmp/hooks/B01_cleanup finished
 I: unmounting /dev/shm filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/4324 and its subdirectories
-I: Current time: Wed Feb 15 18:06:58 -12 2017
-I: pbuilder-time-stamp: 1487225218
+I: removing directory /srv/workspace/pbuilder/4272 and its subdirectories
+I: Current time: Thu Feb 16 20:12:30 +14 2017
+I: pbuilder-time-stamp: 1487225550

Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/testing/armhf/r-cran-phylobase_0.8.2-1.diff:	 65.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/testing/armhf/r-cran-phylobase_0.8.2-1.diff.gz
b2/build.log:	 82.1%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log:	 82.3%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/testing/armhf/r-cran-phylobase_0.8.2-1.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-2WUf5Mt7/tmp.oZ9VI249Yr
+ mv /srv/reproducible-results/rbuild-debian-2WUf5Mt7/tmp.oZ9VI249Yr /var/lib/jenkins/userContent/reproducible/debian/rbuild/testing/armhf/r-cran-phylobase_0.8.2-1.rbuild.log
mv: error writing ‘/var/lib/jenkins/userContent/reproducible/debian/rbuild/testing/armhf/r-cran-phylobase_0.8.2-1.rbuild.log’: No space left on device
mv: failed to extend ‘/var/lib/jenkins/userContent/reproducible/debian/rbuild/testing/armhf/r-cran-phylobase_0.8.2-1.rbuild.log’: No space left on device
+ cleanup_all
+ echo 'Starting cleanup.'
Starting cleanup.
+ '[' 0 = 1 ']'
+ '[' '!' -z '' ']'
+ '[' '!' -f /srv/reproducible-results/rbuild-debian-2WUf5Mt7/tmp.oZ9VI249Yr ']'
+ gzip -9fvn /srv/reproducible-results/rbuild-debian-2WUf5Mt7/tmp.oZ9VI249Yr
/srv/reproducible-results/rbuild-debian-2WUf5Mt7/tmp.oZ9VI249Yr:	 80.4% -- replaced with /srv/reproducible-results/rbuild-debian-2WUf5Mt7/tmp.oZ9VI249Yr.gz
+ '[' master = master ']'
+ gen_package_html r-cran-phylobase
+ cd /srv/jenkins/bin
+ python3 -c 'import reproducible_html_packages as rep
pkg = rep.Package('\''r-cran-phylobase'\'', no_notes=True)
rep.gen_packages_html([pkg], no_clean=True)'
INFO: Starting at 2017-02-16 06:12:45.673409
CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/debian/buildinfo/testing/armhf/r-cran-phylobase_0.8.2-1_armhf.buildinfo
INFO: Finished at 2017-02-16 06:12:46.343674, took: 0:00:00.670287
+ cd -
+ cd
+ rm -r /srv/reproducible-results/rbuild-debian-2WUf5Mt7
+ echo 'All cleanup done.'
All cleanup done.
Thu 16 Feb 06:12:46 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-cTTSmLfs, which will now be removed.
Build step 'Execute shell' marked build as failure

