[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_arm64_14 #5625
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Thu Feb 16 06:27:44 UTC 2017
https://jenkins.debian.net/job/reproducible_builder_arm64_14/5625/------------------------------------------
[...truncated 215.72 KB...]
+Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
+Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
+Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
+Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/26290/tmp/hooks/D01_modify_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -235,7 +243,7 @@
Get: 144 http://ftp.uk.debian.org/debian unstable/main arm64 r-cran-matrix arm64 1.2-8-1 [2275 kB]
Get: 145 http://ftp.uk.debian.org/debian unstable/main arm64 r-cran-nlme arm64 3.1.131-2 [2004 kB]
Get: 146 http://ftp.uk.debian.org/debian unstable/main arm64 r-cran-sp arm64 1:1.2-4-1 [1473 kB]
-Fetched 95.5 MB in 10s (9004 kB/s)
+Fetched 95.5 MB in 23s (4071 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package groff-base.
(Reading database ... (Reading database ... 5%(Reading database ... 10%(Reading database ... 15%(Reading database ... 20%(Reading database ... 25%(Reading database ... 30%(Reading database ... 35%(Reading database ... 40%(Reading database ... 45%(Reading database ... 50%(Reading database ... 55%(Reading database ... 60%(Reading database ... 65%(Reading database ... 70%(Reading database ... 75%(Reading database ... 80%(Reading database ... 85%(Reading database ... 90%(Reading database ... 95%(Reading database ... 100%(Reading database ... 18494 files and directories currently installed.)
@@ -865,7 +873,9 @@
fakeroot is already the newest version (1.21-3.1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
-I: Running cd /build/1st/r-cran-spdep-0.6-9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b --buildinfo-id=arm64 -rfakeroot
+I: user script /srv/workspace/pbuilder/26290/tmp/hooks/A01_modfiy_src_dir starting
+I: user script /srv/workspace/pbuilder/26290/tmp/hooks/A01_modfiy_src_dir finished
+I: Running cd /build/2nd/r-cran-spdep-0.6-9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b --buildinfo-id=arm64 -rfakeroot
dpkg-buildpackage: warning: --buildinfo-id is deprecated, it is without effect
dpkg-buildpackage: info: source package r-cran-spdep
dpkg-buildpackage: info: source version 0.6-9-1
@@ -896,12 +906,12 @@
I: Building using R version 3.3.2-1
I: R API version: r-api-3
I: Using built-time from d/changelog: Sun, 15 Jan 2017 08:39:39 +0100
- mkdir -p /build/1st/r-cran-spdep-0.6-9/debian/r-cran-spdep/usr/lib/R/site-library
- R CMD INSTALL -l /build/1st/r-cran-spdep-0.6-9/debian/r-cran-spdep/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 15 Jan 2017 08:39:39 +0100'"
+ mkdir -p /build/2nd/r-cran-spdep-0.6-9/debian/r-cran-spdep/usr/lib/R/site-library
+ R CMD INSTALL -l /build/2nd/r-cran-spdep-0.6-9/debian/r-cran-spdep/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 15 Jan 2017 08:39:39 +0100'"
* installing *source* package 'spdep' ...
file 'inst/doc/nb_igraph.html' has the wrong MD5 checksum
** libs
-make[1]: Entering directory '/build/1st/r-cran-spdep-0.6-9/src'
+make[1]: Entering directory '/build/2nd/r-cran-spdep-0.6-9/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-l2QCH5/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c card.c -o card.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-l2QCH5/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dfs_ncomp.c -o dfs_ncomp.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-l2QCH5/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnn.c -o dnn.o
@@ -924,10 +934,10 @@
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-l2QCH5/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c skater.c -o skater.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-l2QCH5/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c symtest.c -o symtest.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o spdep.so card.o dfs_ncomp.o dnn.o eminmaxC.o gabriel.o gearyw.o gsymtest.o init.o insiders.o jc.o knn.o lagw.o listw2Matrix.o listw2sn.o ml_sse.o mom_calc.o nbdists.o polypoly.o relative.o skater.o symtest.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
-make[1]: Leaving directory '/build/1st/r-cran-spdep-0.6-9/src'
-make[1]: Entering directory '/build/1st/r-cran-spdep-0.6-9/src'
-make[1]: Leaving directory '/build/1st/r-cran-spdep-0.6-9/src'
-installing to /build/1st/r-cran-spdep-0.6-9/debian/r-cran-spdep/usr/lib/R/site-library/spdep/libs
+make[1]: Leaving directory '/build/2nd/r-cran-spdep-0.6-9/src'
+make[1]: Entering directory '/build/2nd/r-cran-spdep-0.6-9/src'
+make[1]: Leaving directory '/build/2nd/r-cran-spdep-0.6-9/src'
+installing to /build/2nd/r-cran-spdep-0.6-9/debian/r-cran-spdep/usr/lib/R/site-library/spdep/libs
** R
** data
** inst
@@ -999,8 +1009,8 @@
dh_makeshlibs -O--buildsystem=R
dh_shlibdeps -O--buildsystem=R
dpkg-shlibdeps: warning: tried to merge the same object (ld-linux-aarch64.so.1) twice in a symfile
-dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-spdep/usr/lib/R/site-library/spdep/libs/spdep.so was not linked against liblapack.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-spdep/usr/lib/R/site-library/spdep/libs/spdep.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-spdep/usr/lib/R/site-library/spdep/libs/spdep.so was not linked against liblapack.so.3 (it uses none of the library's symbols)
dh_installdeb -O--buildsystem=R
dh_gencontrol -O--buildsystem=R
dh_md5sums -O--buildsystem=R
@@ -1013,12 +1023,14 @@
dpkg-source --after-build r-cran-spdep-0.6-9
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
+I: user script /srv/workspace/pbuilder/26290/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/26290/tmp/hooks/B01_cleanup finished
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/27307 and its subdirectories
-I: Current time: Wed Mar 21 00:47:13 -12 2018
-I: pbuilder-time-stamp: 1521636433
+I: removing directory /srv/workspace/pbuilder/26290 and its subdirectories
+I: Current time: Thu Feb 16 20:26:50 +14 2017
+I: pbuilder-time-stamp: 1487226410
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/r-cran-spdep_0.6-9-1.diff: 69.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/r-cran-spdep_0.6-9-1.diff.gz
b2/build.log: 82.2%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 82.3%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/r-cran-spdep_0.6-9-1.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/rbuild-debian-0RBBMFPq/tmp.dRJEJK84MI
+ mv /srv/reproducible-results/rbuild-debian-0RBBMFPq/tmp.dRJEJK84MI /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/r-cran-spdep_0.6-9-1.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/r-cran-spdep_0.6-9-1.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ filter_changes_files
+ sed -i -e '/^ [a-f0-9]\{32,64\} .*\.buildinfo$/d' b1/r-cran-spdep_0.6-9-1_arm64.changes b2/r-cran-spdep_0.6-9-1_arm64.changes
+ call_diffoscope_on_changes_files
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-0RBBMFPq
+ local TMPLOG=/srv/reproducible-results/rbuild-debian-0RBBMFPq/tmp.AfymFp3NSp
+ local TIMEOUT=120m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/rbuild-debian-0RBBMFPq -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/rbuild-debian-0RBBMFPq/dbd-tmp-cTSnH1A
++ schroot --directory /srv/reproducible-results/rbuild-debian-0RBBMFPq -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 77'
++ echo diffoscope 77
++ grep '^E: 15binfmt: update-binfmts: unable to open'
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ log_info 'diffoscope 77 will be used to compare the two builds:'
+ _log I: 'diffoscope 77 will be used to compare the two builds:'
+ local prefix=I:
+ shift 1
+ tee -a /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/r-cran-spdep_0.6-9-1.rbuild.log
++ date -u
+ echo -e 'Thu Feb 16 06:27:02 UTC 2017 I: diffoscope 77 will be used to compare the two builds:'
Thu Feb 16 06:27:02 UTC 2017 I: diffoscope 77 will be used to compare the two builds:
+ set +e
+ set -x
+ timeout 120m nice schroot --directory /srv/reproducible-results/rbuild-debian-0RBBMFPq -c source:jenkins-reproducible-unstable-diffoscope -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian-0RBBMFPq/dbd-tmp-cTSnH1A ; diffoscope --html /srv/reproducible-results/rbuild-debian-0RBBMFPq/r-cran-spdep_0.6-9-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian-0RBBMFPq/r-cran-spdep_0.6-9-1.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-0RBBMFPq/b1/r-cran-spdep_0.6-9-1_arm64.changes /srv/reproducible-results/rbuild-debian-0RBBMFPq/b2/r-cran-spdep_0.6-9-1_arm64.changes'
+ RESULT=1
++ grep '^E: 15binfmt: update-binfmts: unable to open' /srv/reproducible-results/rbuild-debian-0RBBMFPq/tmp.AfymFp3NSp
++ true
+ LOG_RESULT=
+ '[' '!' -z '' ']'
+ false
+ set +x
Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian-0RBBMFPq/r-cran-spdep_0.6-9-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian-0RBBMFPq/r-cran-spdep_0.6-9-1.diffoscope.txt --profile=- /srv/reproducible-results/rbuild-debian-0RBBMFPq/b1/r-cran-spdep_0.6-9-1_arm64.changes /srv/reproducible-results/rbuild-debian-0RBBMFPq/b2/r-cran-spdep_0.6-9-1_arm64.changes
============================================================================================================================================================================================================================================================================================================================================================================================================================
close_archive (total time: 0.001s)
----------------------------------
0.000s 18 calls diffoscope.comparators.gzip.GzipContainer
0.000s 12 calls diffoscope.comparators.tar.TarContainer
0.000s 8 calls diffoscope.comparators.deb.DebContainer
0.000s 6 calls diffoscope.comparators.xz.XzContainer
0.000s 6 calls diffoscope.comparators.deb.DebTarContainer
command (total time: 7.854s)
----------------------------
3.240s 72 calls diff
1.210s 50 calls xxd
1.000s 404 calls readelf
0.906s 6 calls xz
0.744s 2 calls objcopy
0.391s 44 calls objdump
0.218s 18 calls gzip
0.143s 11 calls cmp
0.002s 16 calls cmp (internal)
compare_files (cumulative) (total time: 96.700s)
------------------------------------------------
19.957s 1 call abc.DotChangesFile
19.587s 2 calls abc.DebFile
19.058s 2 calls abc.XzFile
18.182s 2 calls abc.DebDataTarFile
15.883s 1 call abc.ElfFile
1.548s 2 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.649s 12 calls diffoscope.comparators.elf.ElfSection
0.621s 5 calls abc.GzipFile
0.562s 4 calls diffoscope.comparators.elf.ElfCodeSection
0.211s 2 calls abc.TarFile
0.146s 3 calls diffoscope.comparators.utils.archive.ArchiveMember
0.104s 1 call diffoscope.comparators.elf.ElfStringSection
0.086s 2 calls abc.Md5sumsFile
0.065s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection
0.041s 1 call abc.TextFile
0.000s 34 calls diffoscope.comparators.utils.libarchive.LibarchiveDirectory
container_extract (total time: 1.524s)
--------------------------------------
0.906s 6 calls diffoscope.comparators.xz.XzContainer
0.220s 18 calls diffoscope.comparators.gzip.GzipContainer
0.205s 22 calls diffoscope.comparators.deb.DebContainer
0.166s 16 calls diffoscope.comparators.deb.DebTarContainer
0.027s 16 calls diffoscope.comparators.tar.TarContainer
has_same_content_as (total time: 1.351s)
----------------------------------------
0.982s 7 calls diffoscope.comparators.utils.archive.ArchiveMember
0.326s 16 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.041s 2 calls diffoscope.comparators.debian.DebControlMember
0.001s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink
0.000s 34 calls diffoscope.comparators.utils.libarchive.LibarchiveDirectory
0.000s 1 call abc.DotChangesFile
0.000s 12 calls diffoscope.comparators.elf.ElfSection
0.000s 4 calls diffoscope.comparators.elf.ElfCodeSection
0.000s 1 call diffoscope.comparators.elf.ElfStringSection
0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection
main (total time: 40.054s)
--------------------------
40.001s 2 calls outputs
0.053s 1 call cleanup
open_archive (total time: 0.001s)
---------------------------------
0.000s 18 calls diffoscope.comparators.gzip.GzipContainer
0.000s 12 calls diffoscope.comparators.tar.TarContainer
0.000s 8 calls diffoscope.comparators.deb.DebContainer
0.000s 6 calls diffoscope.comparators.xz.XzContainer
0.000s 6 calls diffoscope.comparators.deb.DebTarContainer
output (total time: 19.809s)
----------------------------
19.662s 1 call html
0.147s 1 call text
recognizes (total time: 0.092s)
-------------------------------
0.039s 10 calls diffoscope.comparators.binary.FilesystemFile
0.030s 622 calls diffoscope.comparators.utils.libarchive.LibarchiveMember
0.009s 372 calls diffoscope.comparators.utils.archive.ArchiveMember
0.005s 216 calls diffoscope.comparators.elf.ElfSection
0.004s 88 calls diffoscope.comparators.debian.DebControlMember
0.002s 72 calls diffoscope.comparators.elf.ElfCodeSection
0.002s 18 calls diffoscope.comparators.elf.MonkeyPatchedElfSection
0.001s 18 calls diffoscope.comparators.elf.ElfStringSection
0.000s 8 calls abc.DotChangesFile
Thu Feb 16 06:27:44 UTC 2017 E: r-cran-spdep failed to build reproducibly in unstable on arm64.
mv: error writing ‘/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/unstable/arm64/r-cran-spdep_0.6-9-1.diffoscope.txt’: No space left on device
mv: failed to extend ‘/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/unstable/arm64/r-cran-spdep_0.6-9-1.diffoscope.txt’: No space left on device
Starting cleanup.
/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/r-cran-spdep_0.6-9-1.rbuild.log:
gzip: /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/r-cran-spdep_0.6-9-1.rbuild.log.gz: No space left on device
Thu 16 Feb 06:27:44 UTC 2017 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-syX3nyyg, which will now be removed.
Build step 'Execute shell' marked build as failure
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