[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_armhf_20 #17025

jenkins at jenkins.debian.net jenkins at jenkins.debian.net
Wed Mar 1 22:31:00 UTC 2017


See <https://jenkins.debian.net/job/reproducible_builder_armhf_20/17025/display/redirect>

------------------------------------------
[...truncated 56.26 KB...]
checking for libgen.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking netinet/tcp.h usability... yes
checking netinet/tcp.h presence... yes
checking for netinet/tcp.h... yes
checking paths.h usability... yes
checking paths.h presence... yes
checking for paths.h... yes
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking valgrind/memcheck.h usability... no
checking valgrind/memcheck.h presence... no
checking for valgrind/memcheck.h... no
checking wchar.h usability... yes
checking wchar.h presence... yes
checking for wchar.h... yes
checking whether time.h and sys/time.h may both be included... yes
checking for gethostbyname_r... 6
checking for gethostbyaddr_r... 8
checking for getservbyname_r... 6
checking for getpwuid_r... 5
checking for getlogin_r... yes
checking for localtime_r... yes
checking for pthread_setconcurrency... yes
checking for pthread_atfork... yes
checking return type of localtime_r... struct
checking whether pthread mutexes are available... yes
checking for vprintf... yes
checking for _doprnt... no
checking for alarm... yes
checking for asprintf... yes
checking for atoll... yes
checking for basename... yes
checking for euidaccess... yes
checking for fseeko... yes
checking for fstat... yes
checking for getgrouplist... yes
checking for getopt... yes
checking for getpagesize... yes
checking for getpass... yes
checking for getpassphrase... no
checking for getpwuid... yes
checking for getrusage... yes
checking for gettimeofday... yes
checking for getuid... yes
checking for lchown... yes
checking for lutimes... yes
checking for memrchr... yes
checking for putenv... yes
checking for readpassphrase... no
checking for readv... yes
checking for select... yes
checking for setenv... yes
checking for statfs... yes
checking for statvfs... yes
checking for strcasecmp... yes
checking for strdup... yes
checking for strlcat... no
checking for strlcpy... no
checking for strndup... yes
checking for strsep... yes
checking for strtok_r... yes
checking for sysmp... no
checking for timegm... yes
checking for usleep... yes
checking for utimes... yes
checking for vasprintf... yes
checking for vsnprintf... yes
checking for writev... yes
checking return type of signal handlers... void
checking whether select updates the timeout when interrupted... yes
checking whether strcasecmp treats letters as lowercase... yes
checking for Linux-like sysinfo with 1 arg... yes
checking for getloadavg... yes
checking for readdir_r... 3
checking for an ANSI C-conforming const... yes
checking whether byte ordering is bigendian... no
checking whether char is unsigned... yes
checking for char... yes
checking size of char... 1
checking for double... yes
checking size of double... 8
checking for float... yes
checking size of float... 4
checking for int... yes
checking size of int... 4
checking for long... yes
checking size of long... 4
checking for long double... yes
checking size of long double... 8
checking for long long... yes
checking size of long long... 8
checking for short... yes
checking size of short... 2
checking for void*... yes
checking size of void*... 4
checking for wchar_t... yes
checking size of wchar_t... 4
checking for __int64... no
checking size of __int64... 0
checking for intptr_t... yes
checking for uintptr_t... yes
checking for struct sockaddr_in.sin_len... no
checking for struct tm.tm_zone... yes
checking for struct tm.__tm_zone... no
checking whether function prototypes can use throw(...)... yes
checking for obsolete string::compare() syntax... no
checking whether the auto_ptr template class works... yes
checking for min/max templates... yes
checking whether new C++ streams have ios_base::... yes
checking for ios(_base)::register_callback... yes
checking for std::char_traits::... yes
checking for SysV semaphores... yes
checking for union semun... no
checking which way the stack grows... up
checking whether the preprocessor supports C99-style variadic macros... yes
checking whether the preprocessor supports GNU-style variadic macros... yes
checking syntax for marking deprecated functions... __attribute__((__deprecated__))
checking how to force inlining... inline __attribute__((always_inline))
checking whether the C compiler supports __attribute__((destructor))... yes
checking whether /usr/bin/gcc  -std=gnu11 -fgnu89-inline supports __attribute__((visibility("default")))... (cached) unnecessary
checking whether the C compiler supports C99 restrict... __restrict__
checking whether the C++ compiler supports C99 restrict... __restrict__
checking syntax for marking functions that never return... __attribute__((__noreturn__))
checking syntax for marking functions whose result should be checked... __attribute__((warn_unused_result))
checking syntax for declaring thread-local variables... __thread
checking syntax for marking types as packed to save memory... __attribute__((__packed__))
checking whether FIONBIO requires BSD_COMP to be defined... no
checking whether INADDR_NONE is defined... yes
checking whether unaligned reads are permissible... yes
checking whether /usr/bin/gcc  -std=gnu11 -fgnu89-inline supports SIMD vector arithmetic... yes
checking whether /usr/bin/gcc  -std=gnu11 -fgnu89-inline supports -funsafe-math-optimizations... yes
checking whether /usr/bin/gcc  -std=gnu11 -fgnu89-inline supports -msse4.1... no
checking whether /usr/bin/gcc  -std=gnu11 -fgnu89-inline supports -maes... no
checking whether /usr/bin/gcc  -std=gnu11 -fgnu89-inline supports -fdiagnostics-color=always... yes
checking whether in-house NCBI resources are available... no
checking for gethostbyname in -lnsl... yes
checking for connect in -lsocket... no
checking for res_search in -lresolv... yes
checking for inet_ntoa_r... no
checking for getaddrinfo... yes
checking for getnameinfo... yes
checking for freehostent... no
checking for gethostent_r... yes
checking for getipnodebyaddr... no
checking for getipnodebyname... no
checking for inet_ntop... yes
checking for socketpair... yes
checking for erf... yes
checking for library containing kstat_open... no
checking for library containing rstat... no
checking for library containing setkey... -lcrypt
checking for library containing dlopen... -ldl
checking for library containing uuid_generate... no
checking for library containing fuse_loop... no
checking for library containing clock_gettime... none required
checking for library containing cplus_demangle... no
checking for nanosleep... yes
checking for pthread_condattr_setclock... yes
checking for sched_yield... yes
checking for library containing iconv... none required
checking for iconv declaration... 
       extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for libz... yes
checking for libbz2... yes
checking for libpcre... yes
checking for libgmp... yes
checking for libgcrypt-config... no
checking for libgcrypt... no
checking for libhogweed... yes
checking for libgnutls-config... no
checking for libgnutls... yes
checking for libssl... no
checking for krb5-config... no
checking for libgssapi_krb5... no
checking for libcurl... no
checking for reentrant Sybase libraries... no
checking for Sybase... no
checking for FreeTDS... no
checking for mysql_config... no
checking for Berkeley DB libraries... no
checking for python... no
checking for python2.5... no
checking for python2.6... no
checking for python2.7... no
checking for python3... no
checking for perl... /usr/bin/perl
checking for usable Perl libraries... no
checking Boost version... 1_62
checking for Boost library name tag... -gcc63-mt-1_62 (autodetected)
checking for Boost.Regex... no
checking for Boost.Spirit... yes
checking for Boost.System... no
checking for Boost.Filesystem... no
checking for Boost.Iostreams... no
checking for Boost.Program-Options... no
checking for Boost.Test... Starting cleanup.
/srv/reproducible-results/rbuild-debian/tmp.r39No5fUdC/tmp.3Z6oSTk4zN:	 45.2% -- replaced with /srv/reproducible-results/rbuild-debian/tmp.r39No5fUdC/tmp.3Z6oSTk4zN.gz
INFO: Starting at 2017-03-01 22:30:57.737057
CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/ncbi-blast+ is unreproducible, but without diffoscope output.
CRITICAL: https://tests.reproducible-builds.org/debian/unstable/armhf/ncbi-blast+ is unreproducible, but without diffoscope output.
INFO: Finished at 2017-03-01 22:30:58.697447, took: 0:00:00.960410
Starting cleanup.
INFO: Starting at 2017-03-01 22:30:59.647804
CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/ncbi-blast+ is unreproducible, but without diffoscope output.
CRITICAL: https://tests.reproducible-builds.org/debian/unstable/armhf/ncbi-blast+ is unreproducible, but without diffoscope output.
INFO: Finished at 2017-03-01 22:31:00.093012, took: 0:00:00.445225
All cleanup done.
rm: cannot remove ‘/srv/reproducible-results/rbuild-debian/tmp.r39No5fUdC’: No such file or directory
All cleanup done.
UPDATE 1
Wed Mar  1 22:31:00 UTC 2017 - https://jenkins.debian.net/job/reproducible_builder_armhf_20/17025/console got remote error with exit code 143 from opi2b-armhf-rb.debian.net for build #1 for ncbi-blast+ on testing/armhf
Sleeping 5m before aborting the job.
FATAL: null
java.lang.NullPointerException
	at hudson.plugins.build_timeout.BuildTimeoutWrapper$EnvironmentImpl.tearDown(BuildTimeoutWrapper.java:199)
	at hudson.model.Build$BuildExecution.doRun(Build.java:173)
	at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:534)
	at hudson.model.Run.execute(Run.java:1728)
	at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
	at hudson.model.ResourceController.execute(ResourceController.java:98)
	at hudson.model.Executor.run(Executor.java:404)



More information about the Qa-jenkins-scm mailing list