[R-pkg-team] Bug#955735: ITP: r-bioc-edaseq -- GNU R exploratory data analysis and normalization for RNA-Seq

Andreas Tille tille at debian.org
Sat Apr 4 12:03:35 BST 2020


Package: wnpp
Severity: wishlist

Subject: ITP: r-bioc-edaseq -- GNU R exploratory data analysis and normalization for RNA-Seq
Package: wnpp
Owner: Andreas Tille <tille at debian.org>
Severity: wishlist

* Package name    : r-bioc-edaseq
  Version         : 2.20.0
  Upstream Author : Davide Risso, Sandrine Dudoit, Ludwig Geistlinger
* URL             : https://bioconductor.org/packages/EDASeq/
* License         : Artistic-2.0
  Programming Lang: GNU R
  Description     : GNU R exploratory data analysis and normalization for RNA-Seq
 Numerical and graphical summaries of RNA-Seq read data.
 Within-lane normalization procedures to adjust for GC-content
 effect (or other gene-level effects) on read counts: loess
 robust local regression, global-scaling, and full-quantile
 normalization (Risso et al., 2011). Between-lane normalization
 procedures to adjust for distributional differences between
 lanes (e.g., sequencing depth): global-scaling and
 full-quantile normalization (Bullard et al., 2010).

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-bioc-edaseq



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