[R-pkg-team] Bug#955735: ITP: r-bioc-edaseq -- GNU R exploratory data analysis and normalization for RNA-Seq
Andreas Tille
tille at debian.org
Sat Apr 4 12:03:35 BST 2020
Package: wnpp
Severity: wishlist
Subject: ITP: r-bioc-edaseq -- GNU R exploratory data analysis and normalization for RNA-Seq
Package: wnpp
Owner: Andreas Tille <tille at debian.org>
Severity: wishlist
* Package name : r-bioc-edaseq
Version : 2.20.0
Upstream Author : Davide Risso, Sandrine Dudoit, Ludwig Geistlinger
* URL : https://bioconductor.org/packages/EDASeq/
* License : Artistic-2.0
Programming Lang: GNU R
Description : GNU R exploratory data analysis and normalization for RNA-Seq
Numerical and graphical summaries of RNA-Seq read data.
Within-lane normalization procedures to adjust for GC-content
effect (or other gene-level effects) on read counts: loess
robust local regression, global-scaling, and full-quantile
normalization (Risso et al., 2011). Between-lane normalization
procedures to adjust for distributional differences between
lanes (e.g., sequencing depth): global-scaling and
full-quantile normalization (Bullard et al., 2010).
Remark: This package is maintained by Debian R Packages Maintainers at
https://salsa.debian.org/r-pkg-team/r-bioc-edaseq
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