[R-pkg-team] Bug#956841: r-cran-rcdklibs: Debian packaged libcdk-java is not exposing all classes

[Andreas Tille]

Package: r-cran-rcdklibs
Version: 2.3+dfsg-4
Severity: important

Hi,

when running the test suite of r-cran-rcdk (ITP #956838) it becomes
obvious that not all classes from cdk source are available.  For
instance cdk-depict.jar is not build which results in the failure


Executing test function test.depictiongenerator  ... Timing stopped at: 0.005 0.004 0.004
Error in .jnew("org.openscience.cdk.depict.DepictionGenerator") : 
  java.lang.ClassNotFoundException
 done successfully.


in the r-cran-rcdk test suite.

Kind regards

       Andreas.


-- System Information:
Debian Release: bullseye/sid
  APT prefers testing
  APT policy: (501, 'testing'), (50, 'buildd-unstable'), (50, 'unstable'), (5, 'experimental'), (1, 'buildd-experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.4.0-4-amd64 (SMP w/4 CPU cores)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8), LANGUAGE=de_DE:de (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages r-cran-rcdklibs depends on:
ii  libcdk-java              1:2.3-2
ii  r-base-core [r-api-3.5]  3.6.3-2
ii  r-cran-rjava             0.9-12-1

r-cran-rcdklibs recommends no packages.

r-cran-rcdklibs suggests no packages.

-- no debconf information