[R-pkg-team] Bug#976840: ITP: r-bioc-gsva -- Gene Set Variation Analysis for microarray and RNA-seq data

Steffen Moeller moeller at debian.org
Tue Dec 8 13:23:12 GMT 2020


Package: wnpp
Severity: wishlist
X-Debbugs-Cc: moeller at debian.org

Subject: ITP: r-bioc-gsva -- Gene Set Variation Analysis for microarray and RNA-seq data
Package: wnpp
Owner: Steffen Moeller <moeller at debian.org>
Severity: wishlist

* Package name    : r-bioc-gsva
  Version         : 1.38.0+ds
  Upstream Author : Justin Guinney
* URL             : https://bioconductor.org/packages/GSVA/
* License         : GPL-2+
  Programming Lang: GNU R
  Description     : Gene Set Variation Analysis for microarray and RNA-seq data
 Gene Set Variation Analysis (GSVA) is a non-parametric, unsupervised
 method for estimating variation of gene set enrichment through the
 samples of a expression data set. GSVA performs a change in coordinate
 systems, transforming the data from a gene by sample matrix to a gene-
 set by sample matrix, thereby allowing the evaluation of pathway
 enrichment for each sample. This new matrix of GSVA enrichment scores
 facilitates applying standard analytical methods like functional
 enrichment, survival analysis, clustering, CNV-pathway analysis or cross-
 tissue pathway analysis, in a pathway-centric manner.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-bioc-gsva



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