[R-pkg-team] Bug#961001: r-bioc-chemminer: autopkgtest failure

[Adrian Bunk]

Source: r-bioc-chemminer
Version: 3.38.0+dfsg-3
Severity: serious

https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-chemminer/5030571/log.gz

...
RUNIT TEST PROTOCOL -- Fri Apr 17 15:28:55 2020 
*********************************************** 
Number of test functions: 24 
Number of deactivated test functions: 7 
Number of errors: 2 
Number of failures: 0 

 
1 Test Suite : 
ChemmineR RUnit Tests - 24 test functions, 2 errors, 0 failures
DEACTIVATED test_ea.comparison: local test
DEACTIVATED test_ea.dupDescriptors: local test only
DEACTIVATED test.3dCoords: causing timeout on bioc, disabling for now
ERROR in test.formatConversions: Error : Forbidden

DEACTIVATED test.genAPDescriptors: removed old version of function
DEACTIVATED test.largestComponent: just for manual testing
DEACTIVATED test.parseV3000: requires local files
DEACTIVATED test.propOB: fails on ubuntu 16.04
ERROR in test.pubchemPUG: Error : 


Test files with failing tests

   test_db.R 
     test_ea.comparison 
     test_ea.dupDescriptors 

   test_general.R 
     test.3dCoords 
     test.formatConversions 
     test.genAPDescriptors 
     test.largestComponent 
     test.parseV3000 
     test.propOB 
     test.pubchemPUG 


Error in BiocGenerics:::testPackage("ChemmineR") : 
  unit tests failed for package ChemmineR
In addition: Warning messages:
1: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘ChemmineOB’
2: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘ChemmineOB’
Execution halted
autopkgtest [15:28:55]: test pkg-r-autopkgtest: -----------------------]
autopkgtest [15:28:55]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
pkg-r-autopkgtest    FAIL non-zero exit status 1



I think "Testsuite: autopkgtest-pkg-r" is just the same problem as
the one documented in debian/tests/control_needs_r-bioc-chemmineob
(BTW: r-bioc-chemmineob is not in Debian at all.)