[R-pkg-team] Bug#961234: r-cran-treescape: FTBFS on ppc64el:Segmentation fault

[Graham Inggs]

Source: r-cran-treescape
Version: 1.10.18+dfsg-1
Severity: serious
Tags: ftbfs bullseye sid

Hi Maintainer

In the recent rebuild for r-api4.0, r-cran-treescape FTBFS on ppc64el [1].
I've copied what I hope is the relevant part of the log below.

Upstream's homepage has a note:
Package ‘treescape’ was removed from the CRAN repository.
Formerly available versions can be obtained from the archive.
Archived on 2017-05-23 as requested by the maintainer
<m.kendall at imperial.ac.uk>.
Consider using package ‘treespace’ instead.

Regards
Graham


[1] https://buildd.debian.org/status/logs.php?pkg=r-cran-treescape&arch=ppc64el
[2] https://cran.r-project.org/web/packages/treescape/index.html


make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I'/usr/lib/R/site-library/Rcpp/include'    -fPIC  -g -O2
-fdebug-prefix-map=/build/r-base-BUYUMC/r-base-4.0.0=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g  -c CPP_update_combinations.cpp -o
CPP_update_combinations.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I'/usr/lib/R/site-library/Rcpp/include'    -fPIC  -g -O2
-fdebug-prefix-map=/build/r-base-BUYUMC/r-base-4.0.0=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o treescape.so
CPP_update_combinations.o RcppExports.o -L/usr/lib/R/lib -lR
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-cran-treescape/usr/lib/R/site-library/00LOCK-r-cran-treescape-1.10.18+dfsg/00new/treescape/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in
package ‘googleVis’
Segmentation fault
ERROR: lazy loading failed for package ‘treescape’
* removing ‘/<<PKGBUILDDIR>>/debian/r-cran-treescape/usr/lib/R/site-library/treescape’
dh_auto_install: error: xvfb-run --auto-servernum --server-num=20 -s
"-screen 0 1024x768x24 -ac +extension GLX +render -noreset" R CMD
INSTALL -l /<<BUILDDIR>>/r-cran-treescape-1.10.18\+dfsg/debian/r-cran-treescape/usr/lib/R/site-library
--clean . "--built-timestamp='Thu, 21 May 2020 09:37:46 +0000'"
returned exit code 1
make[1]: *** [debian/rules:26: override_dh_auto_install] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:16: binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess
returned exit status 2