[R-pkg-team] Bug#961591: r-bioc-graph: autopkgtest regression

Graham Inggs ginggs at debian.org
Tue May 26 13:29:37 BST 2020

Source: r-bioc-graph
Version: 1.66.0-1
Severity: serious
X-Debbugs-CC: debian-ci at lists.debian.org
User: debian-ci at lists.debian.org
Usertags: regression

Hi Maintainer

Since the upload of 1.66.0-1, r-bioc-graph has been failing its own
autopkgtests [1].   This now prevents the migration of r-base.
I've copied what I hope is the relevant part of the log below.


[1] https://ci.debian.net/packages/r/r-bioc-graph/unstable/amd64/

> BiocGenerics:::testPackage("graph", pattern="_test.R")

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    anyDuplicated, append, as.data.frame, basename, cbind, colnames,
    dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep,
    grepl, intersect, is.unsorted, lapply, Map, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank,
    rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Timing stopped at: 0.002 0 0.002
Error in checkEquals("not a node: 'not-a-node'", conditionMessage(ans)) :
  1 string mismatch

RUNIT TEST PROTOCOL -- Tue May 26 07:01:18 2020
Number of test functions: 206
Number of errors: 0
Number of failures: 1

1 Test Suite :
graph RUnit Tests - 206 test functions, 0 errors, 1 failure
FAILURE in testInEdges: Error in checkEquals("not a node:
'not-a-node'", conditionMessage(ans)) :
  1 string mismatch

Test files with failing tests


Error in BiocGenerics:::testPackage("graph", pattern = "_test.R") :
  unit tests failed for package graph
Execution halted
autopkgtest [07:01:18]: test pkg-r-autopkgtest: -----------------------]
autopkgtest [07:01:18]: test pkg-r-autopkgtest:  - - - - - - - - - -
results - - - - - - - - - -
pkg-r-autopkgtest    FAIL non-zero exit status 1

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