[R-pkg-team] Bug#961592: r-bioc-gviz: autopkgtest regression

Graham Inggs ginggs at debian.org
Tue May 26 13:37:04 BST 2020


Source: r-bioc-gviz
Version: 1.32.0+dfsg-1
Severity: serious
X-Debbugs-CC: debian-ci at lists.debian.org
User: debian-ci at lists.debian.org
Usertags: regression

Hi Maintainer

Since the upload of 1.32.0+dfsg-1, r-bioc-gviz has been failing its
own autopkgtests [1].   This now prevents the migration of r-base.
I've copied what I hope is the relevant part of the log below.

Regards
Graham


[1] https://ci.debian.net/packages/r/r-bioc-gviz/unstable/amd64/


> test_check("Gviz")
Error in library(BSgenome.Hsapiens.UCSC.hg19) :
  there is no package called 'BSgenome.Hsapiens.UCSC.hg19'
Calls: test_check ... source_dir -> lapply -> FUN -> eval -> eval -> library
Execution halted
autopkgtest [15:02:19]: test pkg-r-autopkgtest: -----------------------]
autopkgtest [15:02:19]: test pkg-r-autopkgtest:  - - - - - - - - - -
results - - - - - - - - - -
pkg-r-autopkgtest    FAIL non-zero exit status 1



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