[R-pkg-team] Bug#961591: [RFS] r-bioc-graph

Nilesh Patra npatra974 at gmail.com
Wed May 27 21:35:01 BST 2020

On Thu, 28 May 2020, 01:43 Dylan Aïssi, <daissi at debian.org> wrote:

> Hi,
> Le mer. 27 mai 2020 à 20:04, Nilesh Patra <npatra974 at gmail.com> a écrit :
> >
> > The second test (needing the library) failed on gitlab-ci, w/o adding
> r-cran-xml and r-cran-runit, possible because this doesn't pick up depends
> from test-depends.
> > This passed on my local machine though. Since I wanted to be sure, I
> moved this there.
> There is probably a bug on the salsa-ci side, because both tests
> passed on my computer. Let's skip salsa-ci for now.

Ahh, alrighty.

> I have moved back these dependencies to test-deps and I have updated
> your patch (str_replace_all --> gsub) to not add a new dependency.

That's good, and makes sense. I didn't know about this, possibly because I
don't speak R :P

> You probably already noticed, the debian/test/control files for R
> packages require a lot of manual work to keep the list of test-deps
> up-to-date. Because I don't want to do this manually, I moved the code
> to tests these packages into pkg-r-autopkgtest. The list of test-deps
> is automatically generated at run time from the DESCRIPTION file

That's nice!

Currently, it is enabled only for bioconductor packages, if there is
> no big bug with this transition, we will be able to remove the
> debian/test/control files and to enable this for other R packages.

Got it, thanks for the explanation.

> Thanks again for #961591.

And thanks a lot for letting me have this upload (i.e. my name on d/ch for
this upload)

Kind regards,

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/r-pkg-team/attachments/20200528/54f07597/attachment.html>

More information about the R-pkg-team mailing list