[R-pkg-team] Bug#981820: r-bioc-purecn: autopkgtest failure

[Adrian Bunk]

On Fri, Feb 05, 2021 at 09:48:14PM +0100, Andreas Tille wrote:
> Control: tags -1 help
> 
> On Thu, Feb 04, 2021 at 12:44:46PM +0200, Adrian Bunk wrote:
> > ══ Failed tests ════════════════════════════════════════════════════════════════
> > ── Error (test_annotateTargets.R:2:1): (code run outside of `test_that()`) ─────
> > Error: there is no package called ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
> > Backtrace:
> >     â–ˆ
> >  1. └─base::library(TxDb.Hsapiens.UCSC.hg19.knownGene) test_annotateTargets.R:2:0
> 
> That's really strange.  This line
> 
>    https://salsa.debian.org/r-pkg-team/r-bioc-purecn/-/blob/master/debian/tests/run-unit-test#L23
> 
> was added to autopkgtest to remove test_annotateTargets.R which works
> perfectly fine for me.  Is there any strange reason why the removal does
> not work on some other test environment?

run-unit-test        PASS
pkg-r-autopkgtest    FAIL non-zero exit status 1

You fixed this for the run-unit-test,
what fails is the autopkgtest-pkg-r enabled in debian/control.

> Kind regards
> 
>       Andreas.

cu
Adrian