[R-pkg-team] Bug#982622: r-cran-matrixstats might need Breaks: r-bioc-matrixgenerics (<< 1.2.1)

[Adrian Bunk]

Package: r-cran-matrixstats
Version: 0.58.0-1
Severity: serious

https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-matrixgenerics/10405220/log.gz

...
> test_check("MatrixGenerics")
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure (test-api_compatibility.R:89:2): colAvgsPerRowSet works  ────────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Names: 1 string mismatch
Length mismatch: comparison on first 7 components
Component 7: 'is.NA' value mismatch: 0 in current 1 in target
── Error (test-api_compatibility.R:360:2): colMads works  ──────────────────────
Error: Argument 'center' should be of the same length as number of columns of 'x': 6 != 8
Backtrace:
    â–ˆ
 1. ├─MatrixGenerics::colMads(...) test-api_compatibility.R:360:8
 2. └─MatrixGenerics::colMads(...)
 3.   └─MatrixGenerics:::.local(...)
 4.     └─matrixStats::colMads(...)
── Error (test-api_compatibility.R:593:2): colSds works  ───────────────────────
Error: Argument 'center' should be of the same length as number of columns of 'x': 6 != 8
Backtrace:
    â–ˆ
 1. ├─MatrixGenerics::colSds(...) test-api_compatibility.R:593:8
 2. └─MatrixGenerics::colSds(...)
 3.   └─MatrixGenerics:::.local(x, rows, cols, na.rm, center, ...)
 4.     └─matrixStats::colSds(...)
 5.       └─matrixStats::colVars(...)
── Error (test-api_compatibility.R:678:2): colVars works  ──────────────────────
Error: Argument 'center' should be of the same length as number of columns of 'x': 6 != 8
Backtrace:
    â–ˆ
 1. ├─MatrixGenerics::colVars(...) test-api_compatibility.R:678:8
 2. └─MatrixGenerics::colVars(...)
 3.   └─MatrixGenerics:::.local(x, rows, cols, na.rm, center, ...)
 4.     └─matrixStats::colVars(...)
── Error (test-api_compatibility.R:698:2): colWeightedMads works  ──────────────
Error: Argument 'center' should be of the same length as number of columns of 'x': 1 != 6
Backtrace:
    â–ˆ
 1. ├─MatrixGenerics::colWeightedMads(...) test-api_compatibility.R:698:8
 2. └─MatrixGenerics::colWeightedMads(...)
 3.   └─matrixStats::colWeightedMads(...)
── Failure (test-api_compatibility.R:856:2): rowAvgsPerColSet works  ───────────
`matrixStats_formals` not identical to `MatrixGenerics_default_method_formals`.
Names: 1 string mismatch
Length mismatch: comparison on first 7 components
Component 7: 'is.NA' value mismatch: 0 in current 1 in target
── Error (test-api_compatibility.R:1127:2): rowMads works  ─────────────────────
Error: Argument 'center' should be of the same length as number of rows of 'x': 16 != 12
Backtrace:
    â–ˆ
 1. ├─MatrixGenerics::rowMads(...) test-api_compatibility.R:1127:8
 2. └─MatrixGenerics::rowMads(...)
 3.   └─MatrixGenerics:::.local(...)
 4.     └─matrixStats::rowMads(...)
── Error (test-api_compatibility.R:1360:2): rowSds works  ──────────────────────
Error: Argument 'center' should be of the same length as number of rows of 'x': 16 != 12
Backtrace:
    â–ˆ
 1. ├─MatrixGenerics::rowSds(...) test-api_compatibility.R:1360:8
 2. └─MatrixGenerics::rowSds(...)
 3.   └─MatrixGenerics:::.local(x, rows, cols, na.rm, center, ...)
 4.     └─matrixStats::rowSds(...)
 5.       └─matrixStats::rowVars(...)
── Error (test-api_compatibility.R:1445:2): rowVars works  ─────────────────────
Error: Argument 'center' should be of the same length as number of rows of 'x': 16 != 12
Backtrace:
    â–ˆ
 1. ├─MatrixGenerics::rowVars(...) test-api_compatibility.R:1445:8
 2. └─MatrixGenerics::rowVars(...)
 3.   └─MatrixGenerics:::.local(x, rows, cols, na.rm, center, ...)
 4.     └─matrixStats::rowVars(...)
── Error (test-api_compatibility.R:1466:2): rowWeightedMads works  ─────────────
Error: Argument 'center' should be of the same length as number of rows of 'x': 1 != 6
Backtrace:
    â–ˆ
 1. ├─MatrixGenerics::rowWeightedMads(...) test-api_compatibility.R:1466:8
 2. └─MatrixGenerics::rowWeightedMads(...)
 3.   └─matrixStats::rowWeightedMads(...)

[ FAIL 10 | WARN 0 | SKIP 0 | PASS 300 ]
Error: Test failures
Execution halted
autopkgtest [18:11:11]: test pkg-r-autopkgtest: -----------------------]
autopkgtest [18:11:11]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
pkg-r-autopkgtest    FAIL non-zero exit status 1
autopkgtest [18:11:11]: @@@@@@@@@@@@@@@@@@@@ summary
run-unit-test        FAIL non-zero exit status 1
pkg-r-autopkgtest    FAIL non-zero exit status 1