[R-pkg-team] Bug#993814: ITP: r-bioc-biocio -- standard input and output for Bioconductor packages
Andreas Tille
tille at debian.org
Mon Sep 6 20:25:49 BST 2021
Package: wnpp
Severity: wishlist
Subject: ITP: r-bioc-biocio -- standard input and output for Bioconductor packages
Package: wnpp
Owner: Andreas Tille <tille at debian.org>
Severity: wishlist
* Package name : r-bioc-biocio
Version : 1.2.0
Upstream Author : Martin Morgan,
* URL : https://bioconductor.org/packages/BiocIO/
* License : Artistic-2.0
Programming Lang: GNU R
Description : standard input and output for Bioconductor packages
Implements `import()` and `export()` standard generics
for importing and exporting biological data formats. `import()`
supports whole-file as well as chunk-wise iterative import. The
`import()` interface optionally provides a standard mechanism for
'lazy' access via `filter()` (on row or element-like components of
the file resource), `select()` (on column-like components of the
file resource) and `collect()`. The `import()` interface
optionally provides transparent access to remote (e.g. via https)
as well as local access. Developers can register a file extension,
e.g., `.loom` for dispatch from character-based URIs to specific
`import()` / `export()` methods based on classes representing file
types, e.g., `LoomFile()`.
Remark: This package is maintained by Debian R Packages Maintainers at
https://salsa.debian.org/r-pkg-team/r-bioc-biocio
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