[R-pkg-team] Bug#993814: ITP: r-bioc-biocio -- standard input and output for Bioconductor packages

Andreas Tille tille at debian.org
Mon Sep 6 20:25:49 BST 2021


Package: wnpp
Severity: wishlist

Subject: ITP: r-bioc-biocio -- standard input and output for Bioconductor packages
Package: wnpp
Owner: Andreas Tille <tille at debian.org>
Severity: wishlist

* Package name    : r-bioc-biocio
  Version         : 1.2.0
  Upstream Author : Martin Morgan,
* URL             : https://bioconductor.org/packages/BiocIO/
* License         : Artistic-2.0
  Programming Lang: GNU R
  Description     : standard input and output for Bioconductor packages
 Implements `import()` and `export()` standard generics
 for importing and exporting biological data formats. `import()`
 supports whole-file as well as chunk-wise iterative import. The
 `import()` interface optionally provides a standard mechanism for
 'lazy' access via `filter()` (on row or element-like components of
 the file resource), `select()` (on column-like components of the
 file resource) and `collect()`. The `import()` interface
 optionally provides transparent access to remote (e.g. via https)
 as well as local access. Developers can register a file extension,
 e.g., `.loom` for dispatch from character-based URIs to specific
 `import()` / `export()` methods based on classes representing file
 types, e.g., `LoomFile()`.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-bioc-biocio



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