[R-pkg-team] Bug#993977: ITP: r-bioc-dorothea -- Collection Of Human And Mouse TF Regulons
Steffen Moeller
moeller at debian.org
Thu Sep 9 01:04:04 BST 2021
Package: wnpp
Severity: wishlist
Subject: ITP: r-bioc-dorothea -- Collection Of Human And Mouse TF Regulons
Package: wnpp
Owner: Steffen Moeller <moeller at debian.org>
Severity: wishlist
* Package name : r-bioc-dorothea
Version : 1.4.1
Upstream Author : Christian H. Holland
* URL : https://bioconductor.org/packages/data/experiment/dorothea/
* License : GPL-3
Programming Lang: GNU R
Description : Collection Of Human And Mouse TF Regulons
This package contains human and mouse TF regulons.
The human regulons were curated and collected from different types of
evidence such as literature curated resources, ChIP-seq peaks, TF binding
site motifs and interactions inferred directly from gene expression. The
mouse regulons were constructed by mapping the human gene symbols to their
orthologs in mice. Those regulons can be coupled with any statistical method
that aims to analyse gene sets to infer TF activity from gene expression
data. Preferably the statistical method viper is used.
Remark: This package is maintained by Debian R Packages Maintainers at
https://salsa.debian.org/r-pkg-team/r-bioc-dorothea
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