[R-pkg-team] Bug#993977: ITP: r-bioc-dorothea -- Collection Of Human And Mouse TF Regulons

Steffen Moeller moeller at debian.org
Thu Sep 9 01:04:04 BST 2021


Package: wnpp
Severity: wishlist

Subject: ITP: r-bioc-dorothea -- Collection Of Human And Mouse TF Regulons
Package: wnpp
Owner: Steffen Moeller <moeller at debian.org>
Severity: wishlist

* Package name    : r-bioc-dorothea
  Version         : 1.4.1
  Upstream Author : Christian H. Holland
* URL             : https://bioconductor.org/packages/data/experiment/dorothea/
* License         : GPL-3
  Programming Lang: GNU R
  Description     : Collection Of Human And Mouse TF Regulons
 This package contains human and mouse TF regulons.
 The human regulons were curated and collected from different types of
 evidence such as literature curated resources, ChIP-seq peaks, TF binding
 site motifs and interactions inferred directly from gene expression. The
 mouse regulons were constructed by mapping the human gene symbols to their
 orthologs in mice. Those regulons can be coupled with any statistical method
 that aims to analyse gene sets to infer TF activity from gene expression
 data. Preferably the statistical method viper is used.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-bioc-dorothea



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