[R-pkg-team] Bug#995200: r-bioc-dropletutils: autopkgtest failures

Sebastian Ramacher sramacher at debian.org
Mon Sep 27 21:14:10 BST 2021


Source: r-bioc-dropletutils
Version: 1.12.2+ds-1
Severity: serious
X-Debbugs-Cc: sramacher at debian.org

| ══ Failed tests ════════════════════════════════════════════════════════════════
| ── Error (test-read10x.R:129:5): read10xCounts works correctly for HDF5 counts, version < 3 ──
| Error: BiocParallel errors
|   element index: 1
|   first error: Error in h5checktype(). Argument not of class H5IdComponent.
| Backtrace:
||  1. └─DropletUtils::read10xCounts(tmph5) test-read10x.R:129:4
|  2.   ├─BiocParallel::bplapply(...)
|  3.   └─BiocParallel::bplapply(...)
| ── Error (test-read10x.R:155:5): read10xCounts works correctly for HDF5 counts, version >= 3 ──
| Error: BiocParallel errors
|   element index: 1
|   first error: Error in h5checktype(). Argument not of class H5IdComponent.
| Backtrace:
||  1. └─DropletUtils::read10xCounts(tmph5) test-read10x.R:155:4
|  2.   ├─BiocParallel::bplapply(...)
|  3.   └─BiocParallel::bplapply(...)
|
| [ FAIL 2 | WARN 4 | SKIP 0 | PASS 970 ]

See
https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-dropletutils/15560540/log.gz

Cheers
-- 
Sebastian Ramacher
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