[R-pkg-team] Bug#995204: r-bioc-metapod: autopkgtest failures

[Sebastian Ramacher]

Source: r-bioc-metapod
Version: 1.0.0+dfsg-2
Severity: serious
X-Debbugs-Cc: sramacher at debian.org

| > test_check("metapod")
| autopkgtest [00:12:43]: ERROR: timed out on command "su -s /bin/bash debci -c set -e; export USER=`id -nu`; . /etc/profile >/dev/null 2>&1 || true;  . ~/.profile >/dev/null 2>&1 || true; buildtree="/tmp/autopkgtest-lxc.fq0j71sv/downtmp/build.BVG/src"; mkdir -p -m 1777 -- "/tmp/autopkgtest-lxc.fq0j71sv/downtmp/run-unit-test-artifacts"; export AUTOPKGTEST_ARTIFACTS="/tmp/autopkgtest-lxc.fq0j71sv/downtmp/run-unit-test-artifacts"; export ADT_ARTIFACTS="$AUTOPKGTEST_ARTIFACTS"; mkdir -p -m 755 "/tmp/autopkgtest-lxc.fq0j71sv/downtmp/autopkgtest_tmp"; export AUTOPKGTEST_TMP="/tmp/autopkgtest-lxc.fq0j71sv/downtmp/autopkgtest_tmp"; export ADTTMP="$AUTOPKGTEST_TMP"; export DEBIAN_FRONTEND=noninteractive; export LANG=C.UTF-8; export DEB_BUILD_OPTIONS=parallel=48; unset LANGUAGE LC_CTYPE LC_NUMERIC LC_TIME LC_COLLATE   LC_MONETARY LC_MESSAGES LC_PAPER LC_NAME LC_ADDRESS   LC_TELEPHONE LC_MEASUREMENT LC_IDENTIFICATION LC_ALL;rm -f /tmp/autopkgtest_script_pid; set -C; echo $$ > /tmp/autopkgtest_script_pid; set +C; trap "rm -f /tmp/autopkgtest_script_pid" EXIT INT QUIT PIPE; cd "$buildtree"; chmod +x /tmp/autopkgtest-lxc.fq0j71sv/downtmp/build.BVG/src/debian/tests/run-unit-test; touch /tmp/autopkgtest-lxc.fq0j71sv/downtmp/run-unit-test-stdout /tmp/autopkgtest-lxc.fq0j71sv/downtmp/run-unit-test-stderr; /tmp/autopkgtest-lxc.fq0j71sv/downtmp/build.BVG/src/debian/tests/run-unit-test 2> >(tee -a /tmp/autopkgtest-lxc.fq0j71sv/downtmp/run-unit-test-stderr >&2) > >(tee -a /tmp/autopkgtest-lxc.fq0j71sv/downtmp/run-unit-test-stdout);" (kind: test)

and

| > test_check("metapod")
| terminate called after throwing an instance of '__gnu_cxx::recursive_init_error'
|   what():  std::exception
| Aborted

See
https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-metapod/15217942/log.gz

Cheers
-- 
Sebastian Ramacher
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