[R-pkg-team] Bug#1009454: r-bioc-rtracklayer: FTBFS: chain_io.c:1:10: fatal error: S.h: No such file or directory

Nilesh Patra nilesh at debian.org
Mon May 16 12:46:25 BST 2022


Control: fixed -1 1.56.0-1
Control: close -1

> During a rebuild of all packages in sid, your package failed to build
> on amd64.
> 
> 
> Relevant part (hopefully):
> > gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'    -fpic  -g -O2 -ffile-prefix-map=/build/r-base-uzEjFP/r-base-4.1.3.20220408=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c chain_io.c -o chain_io.o
> > chain_io.c:1:10: fatal error: S.h: No such file or directory
> >     1 | #include <S.h>
> >       |          ^~~~~
> > compilation terminated.
> > make[1]: *** [/usr/lib/R/etc/Makeconf:168: chain_io.o] Error 1
> 

Works at:

https://buildd.debian.org/status/package.php?p=r-bioc-rtracklayer

-- 
Best,
Nilesh
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