[R-pkg-team] Bug#1011222: r-cran-rstanarm: FTBFS with onetbb/2021.5.0-8 in experimental

Andrius Merkys merkys at debian.org
Wed May 18 13:10:46 BST 2022


Source: r-cran-rstanarm
Version: 2.21.1-1
Severity: normal
Tags: ftbfs

Hello,

tbb/onetbb transition (#1007222) is currently in the planning. During
test rebuild of libtbb-dev reverse dependencies with onetbb/2021.5.0-8
in experimental, current source failed to build with the following:

   dh_auto_install --destdir=debian/r-cran-rstanarm/ -O--buildsystem=R
I: R packages needed for DEP8: testthat, stanheaders (>= 2.18.1-10-2),
bh, hsaur3, codetools, r-base-dev
I: R Package: rstanarm Version: 2.21.1
I: Building using R version 4.2.0-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Mon, 08 Feb 2021 19:42:38 +0000
        mkdir -p
/<<PKGBUILDDIR>>/debian/r-cran-rstanarm/usr/lib/R/site-library
        R CMD INSTALL -l
/<<PKGBUILDDIR>>/debian/r-cran-rstanarm/usr/lib/R/site-library --clean .
"--built-timestamp='Mon, 08 Feb 2021 19:42:38 +0000'"
* installing *source* package ‘rstanarm’ ...
files ‘DESCRIPTION’, ‘src/Makevars’,
‘tests/testthat/test_stan_functions.R’ have the wrong MD5 checksums
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
"/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools',
'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan
Error in dyn.load(file, DLLpath = DLLpath, ...) :
  unable to load shared object
'/usr/lib/R/site-library/rstan/libs/rstan.so':
  /usr/lib/R/site-library/rstan/libs/rstan.so: undefined symbol:
_ZN3tbb8internal26task_scheduler_observer_v37observeEb
Calls: make_cc -> loadNamespace -> library.dynam -> dyn.load
Execution halted

Andrius



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