[R-pkg-team] Bug#1033853: r-bioc-megadepth: autopkgtest regression: different output

[Paul Gevers]

Source: r-bioc-megadepth
Version: 1.8.0+ds-1
Severity: serious
Control: tags -1 bookworm-ignore
User: debian-ci at lists.debian.org
Usertags: regression

Dear maintainer(s),

Your package has an autopkgtest, great. However, it fails in testing 
since March 2023. Can you please investigate the situation and fix it? I 
copied some of the output at the bottom of this report.

The release team has announced [1] that failing autopkgtest on amd64 and 
arm64 are considered RC in testing. [Release Team member hat on] Because 
we're currently in the hard freeze for bookworm, I have marked this bug 
as bookworm-ignore. Targeted fixes are still welcome.

More information about this bug and the reason for filing it can be 
found on 
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://lists.debian.org/debian-devel-announce/2019/07/msg00002.html

https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-megadepth/32560589/log.gz

══ Failed tests 
════════════════════════════════════════════════════════════════
── Failure ('test-megadepth_main_tests.R:74'): test bigwig2mean on 
remote bw ───
readLines(file.path(tempdir(), "bw2.remote.mean.annotation.tsv")) 
(`actual`) not equal to 
readLines("https://raw.githubusercontent.com/ChristopherWilks/megadepth/master/tests/testbw2.bed.mean") 
(`expected`).

  actual | expected
         - "chr10\t0\t10\t0.00"               [1]
         - "chr10\t8756697\t8756762\t15.85"   [2]
         - "chr10\t4359156\t4359188\t3.00"    [3]
         - "GL000219.1\t168500\t168620\t1.26" [4]

[ FAIL 1 | WARN 1 | SKIP 0 | PASS 129 ]
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