[R-pkg-team] Bug#1034852: r-bioc-annotationhub: autopkgtest regression: download failed

[Paul Gevers]

Source: r-bioc-annotationhub
Version: 3.6.0+dfsg-1
Severity: serious
Control: tags -1 bookworm-ignore
User: debian-ci at lists.debian.org
Usertags: regression

Dear maintainer(s),

Your package has an autopkgtest, great. However, it fails since April 
2023. Can you please investigate the situation and fix it? I copied some 
of the output at the bottom of this report.

The release team has announced [1] that failing autopkgtest on amd64 and 
arm64 are considered RC in testing. [Release Team member hat on] Because 
we're currently in the hard freeze for bookworm, I have marked this bug 
as bookworm-ignore. Targeted fixes are still welcome.

More information about this bug and the reason for filing it can be 
found on 
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://lists.debian.org/debian-devel-announce/2019/07/msg00002.html

https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-annotationhub/33053151/log.gz

RUNIT TEST PROTOCOL -- Fri Apr 21 23:47:54 2023
***********************************************
Number of test functions: 19
Number of errors: 0
Number of failures: 2


1 Test Suite :
AnnotationHub RUnit Tests - 19 test functions, 0 errors, 2 failures
FAILURE in test_accessors_setters: Error in 
checkIdentical(dates[length(dates)], hubDate(ah)) : FALSE

FAILURE in test_db_connections: Error in checkIdentical(ids2, 
AnnotationHub:::.db_uid(hub)) : FALSE


Test files with failing tests

    test_AnnotationHub-class.R
      test_accessors_setters

    test_db_utils.R
      test_db_connections


Error in BiocGenerics:::testPackage("AnnotationHub") :
   unit tests failed for package AnnotationHub
In addition: Warning message:
download failed
   hub path: ‘bogus/url’
   cache resource: ‘AHInvalid : 5012’
   reason: all(rtype == "web" | file.exists(fpath)) is not TRUE
Execution halted
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