[R-pkg-team] Bug#1048735: r-cran-commonmark: Fails to build source after successful build

[Lucas Nussbaum]

Source: r-cran-commonmark
Version: 1.9.0-1
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild

Hi,

This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).

This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.

More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild

Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S
> -----------------------------------------------------------------------------------------------------------------------------------------
> 
> dpkg-buildpackage: info: source package r-cran-commonmark
> dpkg-buildpackage: info: source version 1.9.0-1
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Andreas Tille <tille at debian.org>
>  dpkg-source --before-build .
>  debian/rules clean
> dh clean --buildsystem R
>    dh_auto_clean -O--buildsystem=R
>    dh_autoreconf_clean -O--buildsystem=R
>    dh_clean -O--buildsystem=R
>  dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building r-cran-commonmark using existing ./r-cran-commonmark_1.9.0.orig.tar.gz
> dpkg-source: error: cannot represent change to src/cmark/arena.o: binary file contents changed
> dpkg-source: error: add src/cmark/arena.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/blocks.o: binary file contents changed
> dpkg-source: error: add src/cmark/blocks.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/buffer.o: binary file contents changed
> dpkg-source: error: add src/cmark/buffer.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/cmark.o: binary file contents changed
> dpkg-source: error: add src/cmark/cmark.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/cmark_ctype.o: binary file contents changed
> dpkg-source: error: add src/cmark/cmark_ctype.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/commonmark.o: binary file contents changed
> dpkg-source: error: add src/cmark/commonmark.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/footnotes.o: binary file contents changed
> dpkg-source: error: add src/cmark/footnotes.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/houdini_href_e.o: binary file contents changed
> dpkg-source: error: add src/cmark/houdini_href_e.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/houdini_html_e.o: binary file contents changed
> dpkg-source: error: add src/cmark/houdini_html_e.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/houdini_html_u.o: binary file contents changed
> dpkg-source: error: add src/cmark/houdini_html_u.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/html.o: binary file contents changed
> dpkg-source: error: add src/cmark/html.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/inlines.o: binary file contents changed
> dpkg-source: error: add src/cmark/inlines.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/iterator.o: binary file contents changed
> dpkg-source: error: add src/cmark/iterator.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/latex.o: binary file contents changed
> dpkg-source: error: add src/cmark/latex.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/libstatcmark.a: binary file contents changed
> dpkg-source: error: add src/cmark/libstatcmark.a in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/linked_list.o: binary file contents changed
> dpkg-source: error: add src/cmark/linked_list.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/man.o: binary file contents changed
> dpkg-source: error: add src/cmark/man.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/map.o: binary file contents changed
> dpkg-source: error: add src/cmark/map.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/node.o: binary file contents changed
> dpkg-source: error: add src/cmark/node.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/plaintext.o: binary file contents changed
> dpkg-source: error: add src/cmark/plaintext.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/plugin.o: binary file contents changed
> dpkg-source: error: add src/cmark/plugin.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/references.o: binary file contents changed
> dpkg-source: error: add src/cmark/references.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/registry.o: binary file contents changed
> dpkg-source: error: add src/cmark/registry.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/render.o: binary file contents changed
> dpkg-source: error: add src/cmark/render.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/scanners.o: binary file contents changed
> dpkg-source: error: add src/cmark/scanners.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/syntax_extension.o: binary file contents changed
> dpkg-source: error: add src/cmark/syntax_extension.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/utf8.o: binary file contents changed
> dpkg-source: error: add src/cmark/utf8.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/cmark/xml.o: binary file contents changed
> dpkg-source: error: add src/cmark/xml.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/extensions/autolink.o: binary file contents changed
> dpkg-source: error: add src/extensions/autolink.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/extensions/core-extensions.o: binary file contents changed
> dpkg-source: error: add src/extensions/core-extensions.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/extensions/ext_scanners.o: binary file contents changed
> dpkg-source: error: add src/extensions/ext_scanners.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/extensions/strikethrough.o: binary file contents changed
> dpkg-source: error: add src/extensions/strikethrough.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/extensions/table.o: binary file contents changed
> dpkg-source: error: add src/extensions/table.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/extensions/tagfilter.o: binary file contents changed
> dpkg-source: error: add src/extensions/tagfilter.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to src/extensions/tasklist.o: binary file contents changed
> dpkg-source: error: add src/extensions/tasklist.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: unrepresentable changes to source
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1
> 
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S' failed to run.


The full build log is available from:
http://qa-logs.debian.net/2023/08/13/r-cran-commonmark_1.9.0-1_unstable.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.