[R-pkg-team] Bug#1042150: r-cran-genabel: FTBFS: ctest.h:32:13: error: unknown type name ‘Sint’; did you mean ‘uint’?

[Lucas Nussbaum]

Source: r-cran-genabel
Version: 1.8-0-6
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20230726 ftbfs-trixie

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> gcc -I"/usr/share/R/include" -DNDEBUG       -fpic  -g -O2 -ffile-prefix-map=/build/r-base-hJdbdy/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c fexact.c -o fexact.o
> In file included from fexact.c:18:
> ctest.h:32:13: error: unknown type name ‘Sint’; did you mean ‘uint’?
>    32 | void d2x2xk(Sint *k, double *m, double *n, double *t, double *d);
>       |             ^~~~
>       |             uint
> ctest.h:36:14: error: unknown type name ‘Sint’; did you mean ‘uint’?
>    36 | void pansari(Sint *len, double *x, Sint *m, Sint *n);
>       |              ^~~~
>       |              uint
> ctest.h:36:36: error: unknown type name ‘Sint’; did you mean ‘uint’?
>    36 | void pansari(Sint *len, double *x, Sint *m, Sint *n);
>       |                                    ^~~~
>       |                                    uint
> ctest.h:36:45: error: unknown type name ‘Sint’; did you mean ‘uint’?
>    36 | void pansari(Sint *len, double *x, Sint *m, Sint *n);
>       |                                             ^~~~
>       |                                             uint
> ctest.h:37:14: error: unknown type name ‘Sint’; did you mean ‘uint’?
>    37 | void dansari(Sint *len, double *x, Sint *m, Sint *n);
>       |              ^~~~
>       |              uint
> ctest.h:37:36: error: unknown type name ‘Sint’; did you mean ‘uint’?
>    37 | void dansari(Sint *len, double *x, Sint *m, Sint *n);
>       |                                    ^~~~
>       |                                    uint
> ctest.h:37:45: error: unknown type name ‘Sint’; did you mean ‘uint’?
>    37 | void dansari(Sint *len, double *x, Sint *m, Sint *n);
>       |                                             ^~~~
>       |                                             uint
> ctest.h:38:31: error: unknown type name ‘Sint’; did you mean ‘uint’?
>    38 | void pkolmogorov2x(double *x, Sint *n);
>       |                               ^~~~
>       |                               uint
> ctest.h:39:15: error: unknown type name ‘Sint’; did you mean ‘uint’?
>    39 | void pkendall(Sint *len, double *x, Sint *n);
>       |               ^~~~
>       |               uint
> ctest.h:39:37: error: unknown type name ‘Sint’; did you mean ‘uint’?
>    39 | void pkendall(Sint *len, double *x, Sint *n);
>       |                                     ^~~~
>       |                                     uint
> ctest.h:40:13: error: unknown type name ‘Sint’; did you mean ‘uint’?
>    40 | void pkstwo(Sint *n, double *x, double *tol) ;
>       |             ^~~~
>       |             uint
> ctest.h:42:28: error: unknown type name ‘Sint’; did you mean ‘uint’?
>    42 | void psmirnov2x(double *x, Sint *m, Sint *n);
>       |                            ^~~~
>       |                            uint
> ctest.h:42:37: error: unknown type name ‘Sint’; did you mean ‘uint’?
>    42 | void psmirnov2x(double *x, Sint *m, Sint *n);
>       |                                     ^~~~
>       |                                     uint
> ctest.h:43:14: error: unknown type name ‘Sint’; did you mean ‘uint’?
>    43 | void qansari(Sint *len, double *x, Sint *m, Sint *n);
>       |              ^~~~
>       |              uint
> ctest.h:43:36: error: unknown type name ‘Sint’; did you mean ‘uint’?
>    43 | void qansari(Sint *len, double *x, Sint *m, Sint *n);
>       |                                    ^~~~
>       |                                    uint
> ctest.h:43:45: error: unknown type name ‘Sint’; did you mean ‘uint’?
>    43 | void qansari(Sint *len, double *x, Sint *m, Sint *n);
>       |                                             ^~~~
>       |                                             uint
> make[1]: *** [/usr/lib/R/etc/Makeconf:191: fexact.o] Error 1


The full build log is available from:
http://qa-logs.debian.net/2023/07/26/r-cran-genabel_1.8-0-6_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20230726;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20230726&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.