[R-pkg-team] Bug#1042421: ITP: r-bioc-saturn -- scalable analysis of differential transcript usage for RNA-sequencing
Andreas Tille
tille at debian.org
Fri Jul 28 05:28:30 BST 2023
Package: wnpp
Severity: wishlist
Subject: ITP: r-bioc-saturn -- scalable analysis of differential transcript usage for RNA-sequencing
Package: wnpp
Owner: Andreas Tille <tille at debian.org>
Severity: wishlist
* Package name : r-bioc-saturn
Version : 1.8.0
Upstream Author : Jeroen Gilis,
* URL : https://bioconductor.org/packages/satuRn/
* License : Artistic-2.0
Programming Lang: GNU R
Description : scalable analysis of differential transcript usage for RNA-sequencing
This Bioconductor package can be used for Scalable Analysis of Differential
Transcript Usage for Bulk and Single-Cell RNA-sequencing.
.
Applications satuRn provides a higly
performant and scalable framework for performing differential
transcript usage analyses. The package consists of three main
functions. The first function, fitDTU, fits quasi-binomial
generalized linear models that model transcript usage in different
groups of interest. The second function, testDTU, tests for
differential usage of transcripts between groups of interest.
Finally, plotDTU visualizes the usage profiles of transcripts in
groups of interest.
Remark: This package is maintained by Debian R Packages Maintainers at
https://salsa.debian.org/r-pkg-team/r-bioc-saturn
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