[R-pkg-team] Bug#1039633: r-bioc-bioccheck: autopkgtest failure with r-base (4.3.1-1)

Bas Couwenberg sebastic at xs4all.nl
Wed Jun 28 06:54:56 BST 2023


Source: r-bioc-bioccheck
Version: 1.34.2+dfsg-1
Severity: serious
Justification: autopkgtest failure

Dear Maintainer,

The autopkgtest of your package fails with r-base (4.3.1-1):

 209s RUNIT TEST PROTOCOL -- Tue Jun 27 15:46:32 2023 
 209s *********************************************** 
 209s Number of test functions: 48 
 209s Number of deactivated test functions: 3 
 209s Number of errors: 0 
 209s Number of failures: 1 
 209s 
 209s  
 209s 1 Test Suite : 
 209s BiocCheck RUnit Tests - 48 test functions, 0 errors, 1 failure
 209s FAILURE in test_checkBBScompatibility: Error in checkTrue(.BiocCheck$getNum("note") == 1, "citation produces note") : 
 209s   Test not TRUE
 209s citation produces note
 209s DEACTIVATED test_checkExportsAreDocumented: Skip this test, it requires a package non-available in Debian
 209s DEACTIVATED test_checkUsageOfDont: Skip this test, it requires a package non-available in Debian
 209s DEACTIVATED test_remotesUsage: Skip this test, it requires a package non-available in Debian
 209s 
 209s Test files with failing tests
 209s 
 209s    test_BiocCheck.R 
 209s      test_checkBBScompatibility 
 209s      test_checkExportsAreDocumented 
 209s      test_checkUsageOfDont 
 209s      test_remotesUsage 
 209s 
 209s 
 209s Error in BiocGenerics:::testPackage("BiocCheck") : 
 209s   unit tests failed for package BiocCheck

https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-bioccheck/34907238/log.gz

Kind Regards,

Bas



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