[R-pkg-team] Bug#1039634: r-bioc-biocneighbors: autopkgtest failure with r-base (4.3.1-1)

[Bas Couwenberg]

Source: r-bioc-biocneighbors
Version: 1.16.0+ds-1
Severity: serious
Justification: autopkgtest failure

Dear Maintainer,

The autopkgtest of your package fail with r-base (4.3.1-1):

 344s [ FAIL 6 | WARN 488 | SKIP 0 | PASS 3372 ]
 344s 
 344s ══ Failed tests ════════════════════════════════════════════════════════════════
 344s ── Error ('test-find-exhaustive.R:11'): findExhaustive() behaves correctly on simple inputs ──
 344s Error in `FNN::get.knn(X, k = k)`: DLL requires the use of native symbols
 344s Backtrace:
 344s     ▆
 344s  1. └─BiocNeighbors:::refFindKNN(X, k = k) at test-find-exhaustive.R:11:12
 344s  2.   └─FNN::get.knn(X, k = k) at tests/testthat/setup.R:58:8
 344s ── Error ('test-find-kmknn.R:11'): findKmknn() behaves correctly on simple inputs ──
 344s Error in `FNN::get.knn(X, k = k)`: DLL requires the use of native symbols
 344s Backtrace:
 344s     ▆
 344s  1. └─BiocNeighbors:::refFindKNN(X, k = k) at test-find-kmknn.R:11:12
 344s  2.   └─FNN::get.knn(X, k = k) at tests/testthat/setup.R:58:8
 344s ── Error ('test-find-vptree.R:11'): findVptree() behaves correctly on simple inputs ──
 344s Error in `FNN::get.knn(X, k = k)`: DLL requires the use of native symbols
 344s Backtrace:
 344s     ▆
 344s  1. └─BiocNeighbors:::refFindKNN(X, k = k) at test-find-vptree.R:11:12
 344s  2.   └─FNN::get.knn(X, k = k) at tests/testthat/setup.R:58:8
 344s ── Error ('test-query-exhaustive.R:15'): queryExhaustive() behaves correctly with queries ──
 344s Error in `FNN::get.knnx(data = X, query = Y, k = k)`: DLL requires the use of native symbols
 344s Backtrace:
 344s     ▆
 344s  1. └─BiocNeighbors:::refQueryKNN(X, Y, k = k) at test-query-exhaustive.R:15:12
 344s  2.   └─FNN::get.knnx(data = X, query = Y, k = k) at tests/testthat/setup.R:78:8
 344s ── Error ('test-query-kmknn.R:15'): queryKmknn() behaves correctly with queries ──
 344s Error in `FNN::get.knnx(data = X, query = Y, k = k)`: DLL requires the use of native symbols
 344s Backtrace:
 344s     ▆
 344s  1. └─BiocNeighbors:::refQueryKNN(X, Y, k = k) at test-query-kmknn.R:15:12
 344s  2.   └─FNN::get.knnx(data = X, query = Y, k = k) at tests/testthat/setup.R:78:8
 344s ── Error ('test-query-vptree.R:15'): queryVptree() behaves correctly with queries ──
 344s Error in `FNN::get.knnx(data = X, query = Y, k = k)`: DLL requires the use of native symbols
 344s Backtrace:
 344s     ▆
 344s  1. └─BiocNeighbors:::refQueryKNN(X, Y, k = k) at test-query-vptree.R:15:12
 344s  2.   └─FNN::get.knnx(data = X, query = Y, k = k) at tests/testthat/setup.R:78:8
 344s 
 344s [ FAIL 6 | WARN 488 | SKIP 0 | PASS 3372 ]

https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-biocneighbors/34918493/log.gz