[R-pkg-team] Bug#1039657: r-cran-pammtools: autopkgtest failure with r-base (4.3.1-1)

[Bas Couwenberg]

Source: r-cran-pammtools
Version: 0.5.8-1
Severity: serious
Justification: autopkgtest failure

Dear Maintainer,

The autopkgtest of your package fails with r-base (4.3.1-1):

 59s [ FAIL 2 | WARN 8 | SKIP 0 | PASS 341 ]
 59s 
 59s ══ Failed tests ════════════════════════════════════════════════════════════════
 59s ── Error ('test-cumulative-effect.R:29'): LL helpers and as_ped produce equivalent LL windows ──
 59s Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the use of native symbols
 59s Backtrace:
 59s      ▆
 59s   1. ├─pammtools::sim_pexp(...) at test-cumulative-effect.R:29:2
 59s   2. │ ├─base::suppressMessages(ped <- ped %>% left_join(reduce(df2, full_join)))
 59s   3. │ │ └─base::withCallingHandlers(...)
 59s   4. │ └─ped %>% left_join(reduce(df2, full_join))
 59s   5. ├─dplyr::left_join(., reduce(df2, full_join))
 59s   6. ├─pammtools:::left_join.ped(., reduce(df2, full_join))
 59s   7. │ └─pammtools:::ped_classes(y)
 59s   8. │   └─class(ped) %in% ...
 59s   9. └─purrr::reduce(df2, full_join)
 59s  10.   └─purrr:::reduce_impl(.x, .f, ..., .init = .init, .dir = .dir)
 59s  11.     ├─dplyr (local) fn(out, elt, ...)
 59s  12.     └─dplyr:::full_join.data.frame(out, elt, ...)
 59s  13.       └─dplyr:::join_mutate(...)
 59s  14.         ├─base::`[<-`(`*tmp*`, new_rows, names(y_key), value = `<tibble[,2]>`)
 59s  15.         └─tibble:::`[<-.tbl_df`(`*tmp*`, new_rows, names(y_key), value = `<tibble[,2]>`)
 59s  16.           └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
 59s  17.             └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
 59s  18.               ├─base::withCallingHandlers(...)
 59s  19.               └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
 59s ── Error ('test-simple-transform.R:50'): Transformation of regular survival data works ──
 59s Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the use of native symbols
 59s Backtrace:
 59s     ▆
 59s  1. ├─base::`[<-`(`*tmp*`, 6, "days", value = `<dbl>`) at test-simple-transform.R:50:2
 59s  2. └─tibble:::`[<-.tbl_df`(`*tmp*`, 6, "days", value = `<dbl>`) at test-simple-transform.R:50:2
 59s  3.   └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
 59s  4.     └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
 59s  5.       ├─base::withCallingHandlers(...)
 59s  6.       └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
 59s 
 59s [ FAIL 2 | WARN 8 | SKIP 0 | PASS 341 ]

https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-cran-pammtools/34918508/log.gz