[R-pkg-team] Bug#1039688: r-cran-projpred: autopkgtest failure with r-base (4.3.1-1)

[Bas Couwenberg]

Source: r-cran-projpred
Version: 2.3.0+dfsg-1
Severity: serious
Justification: autopkgtest failure

Dear Maintainer,

 90s [ FAIL 14 | WARN 0 | SKIP 97 | PASS 1186 ]
 90s 
 90s ══ Skipped tests ═══════════════════════════════════════════════════════════════
 90s • On CRAN (3)
 90s • run_cvvs is not TRUE (18)
 90s • run_prj is not TRUE (35)
 90s • run_prll is not TRUE (3)
 90s • run_vs is not TRUE (38)
 90s 
 90s ══ Failed tests ════════════════════════════════════════════════════════════════
 90s ── Failure ('test_datafit.R:202'): init_refmodel(): `object` of class "datafit" works ──
 90s Names of `fam_orig` ('family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'dispersion') don't match 'family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta'
 90s rstanarm.glm.gauss.stdformul.with_wobs.with_offs
 90s Backtrace:
 90s     ▆
 90s  1. └─projpred:::refmodel_tester(...) at test_datafit.R:202:4
 90s  2.   └─projpred:::extfam_tester(...)
 90s  3.     └─testthat::expect_named(fam_orig, fam_orig_nms, info = info_str)
 90s ── Failure ('test_datafit.R:202'): init_refmodel(): `object` of class "datafit" works ──
 90s Names of `fam_orig` ('family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'simulate', 'dispersion') don't match 'family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'simulate'
 90s rstanarm.glm.brnll.stdformul.without_wobs.without_offs
 90s Backtrace:
 90s     ▆
 90s  1. └─projpred:::refmodel_tester(...) at test_datafit.R:202:4
 90s  2.   └─projpred:::extfam_tester(...)
 90s  3.     └─testthat::expect_named(fam_orig, fam_orig_nms, info = info_str)
 90s ── Failure ('test_datafit.R:202'): init_refmodel(): `object` of class "datafit" works ──
 90s Names of `fam_orig` ('family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'dispersion') don't match 'family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta'
 90s rstanarm.glmm.gauss.spclformul.with_wobs.with_offs
 90s Backtrace:
 90s     ▆
 90s  1. └─projpred:::refmodel_tester(...) at test_datafit.R:202:4
 90s  2.   └─projpred:::extfam_tester(...)
 90s  3.     └─testthat::expect_named(fam_orig, fam_orig_nms, info = info_str)
 90s ── Failure ('test_datafit.R:202'): init_refmodel(): `object` of class "datafit" works ──
 90s Names of `fam_orig` ('family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'dispersion') don't match 'family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta'
 90s rstanarm.gam.gauss.spclformul.with_wobs.without_offs
 90s Backtrace:
 90s     ▆
 90s  1. └─projpred:::refmodel_tester(...) at test_datafit.R:202:4
 90s  2.   └─projpred:::extfam_tester(...)
 90s  3.     └─testthat::expect_named(fam_orig, fam_orig_nms, info = info_str)
 90s ── Failure ('test_datafit.R:202'): init_refmodel(): `object` of class "datafit" works ──
 90s Names of `fam_orig` ('family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'simulate', 'dispersion') don't match 'family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'simulate'
 90s rstanarm.gamm.brnll.stdformul.without_wobs.without_offs
 90s Backtrace:
 90s     ▆
 90s  1. └─projpred:::refmodel_tester(...) at test_datafit.R:202:4
 90s  2.   └─projpred:::extfam_tester(...)
 90s  3.     └─testthat::expect_named(fam_orig, fam_orig_nms, info = info_str)
 90s ── Failure ('test_extend_family.R:13'): `family` works ─────────────────────────
 90s Names of `fam_orig` ('family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'dispersion') don't match 'family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta'
 90s gauss
 90s Backtrace:
 90s     ▆
 90s  1. └─projpred:::extfam_tester(...) at test_extend_family.R:13:4
 90s  2.   └─testthat::expect_named(fam_orig, fam_orig_nms, info = info_str)
 90s ── Failure ('test_extend_family.R:13'): `family` works ─────────────────────────
 90s Names of `fam_orig` ('family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'simulate', 'dispersion') don't match 'family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'simulate'
 90s brnll
 90s Backtrace:
 90s     ▆
 90s  1. └─projpred:::extfam_tester(...) at test_extend_family.R:13:4
 90s  2.   └─testthat::expect_named(fam_orig, fam_orig_nms, info = info_str)
 90s ── Failure ('test_extend_family.R:13'): `family` works ─────────────────────────
 90s Names of `fam_orig` ('family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'simulate', 'dispersion') don't match 'family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'simulate'
 90s binom
 90s Backtrace:
 90s     ▆
 90s  1. └─projpred:::extfam_tester(...) at test_extend_family.R:13:4
 90s  2.   └─testthat::expect_named(fam_orig, fam_orig_nms, info = info_str)
 90s ── Failure ('test_extend_family.R:13'): `family` works ─────────────────────────
 90s Names of `fam_orig` ('family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'simulate', 'dispersion') don't match 'family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'simulate'
 90s poiss
 90s Backtrace:
 90s     ▆
 90s  1. └─projpred:::extfam_tester(...) at test_extend_family.R:13:4
 90s  2.   └─testthat::expect_named(fam_orig, fam_orig_nms, info = info_str)
 90s ── Failure ('test_refmodel.R:20'): `object` of class "stanreg" or "brmsfit" works ──
 90s Names of `fam_orig` ('family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'dispersion') don't match 'family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta'
 90s rstanarm.glm.gauss.stdformul.with_wobs.with_offs
 90s Backtrace:
 90s     ▆
 90s  1. └─projpred:::refmodel_tester(...) at test_refmodel.R:20:4
 90s  2.   └─projpred:::extfam_tester(...)
 90s  3.     └─testthat::expect_named(fam_orig, fam_orig_nms, info = info_str)
 90s ── Failure ('test_refmodel.R:20'): `object` of class "stanreg" or "brmsfit" works ──
 90s Names of `fam_orig` ('family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'simulate', 'dispersion') don't match 'family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'simulate'
 90s rstanarm.glm.brnll.stdformul.without_wobs.without_offs
 90s Backtrace:
 90s     ▆
 90s  1. └─projpred:::refmodel_tester(...) at test_refmodel.R:20:4
 90s  2.   └─projpred:::extfam_tester(...)
 90s  3.     └─testthat::expect_named(fam_orig, fam_orig_nms, info = info_str)
 90s ── Failure ('test_refmodel.R:20'): `object` of class "stanreg" or "brmsfit" works ──
 90s Names of `fam_orig` ('family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'dispersion') don't match 'family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta'
 90s rstanarm.glmm.gauss.spclformul.with_wobs.with_offs
 90s Backtrace:
 90s     ▆
 90s  1. └─projpred:::refmodel_tester(...) at test_refmodel.R:20:4
 90s  2.   └─projpred:::extfam_tester(...)
 90s  3.     └─testthat::expect_named(fam_orig, fam_orig_nms, info = info_str)
 90s ── Failure ('test_refmodel.R:20'): `object` of class "stanreg" or "brmsfit" works ──
 90s Names of `fam_orig` ('family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'dispersion') don't match 'family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta'
 90s rstanarm.gam.gauss.spclformul.with_wobs.without_offs
 90s Backtrace:
 90s     ▆
 90s  1. └─projpred:::refmodel_tester(...) at test_refmodel.R:20:4
 90s  2.   └─projpred:::extfam_tester(...)
 90s  3.     └─testthat::expect_named(fam_orig, fam_orig_nms, info = info_str)
 90s ── Failure ('test_refmodel.R:20'): `object` of class "stanreg" or "brmsfit" works ──
 90s Names of `fam_orig` ('family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'simulate', 'dispersion') don't match 'family', 'link', 'linkfun', 'linkinv', 'variance', 'dev.resids', 'aic', 'mu.eta', 'initialize', 'validmu', 'valideta', 'simulate'
 90s rstanarm.gamm.brnll.stdformul.without_wobs.without_offs
 90s Backtrace:
 90s     ▆
 90s  1. └─projpred:::refmodel_tester(...) at test_refmodel.R:20:4
 90s  2.   └─projpred:::extfam_tester(...)
 90s  3.     └─testthat::expect_named(fam_orig, fam_orig_nms, info = info_str)
 90s 
 90s [ FAIL 14 | WARN 0 | SKIP 97 | PASS 1186 ]

https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-cran-projpred/34918878/log.gz