[R-pkg-team] Bug#1055589: r-cran-rgdal: FTBFS with GDAL 3.8.0

[Bas Couwenberg]

Source: r-cran-rgdal
Version: 1.6-7+dfsg-1
Severity: important
Tags: ftbfs
User: debian-gis at lists.debian.org
Usertags: gdal-3.8

Dear Maintainer,

Your package FTBFS with GDAL 3.8.0 from experimental:

 g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include/x86_64-linux-gnu -I/usr/include/webp  -DPROJ_H_API -I'/usr/lib/R/site-library/sp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2  -c OGR_write.cpp -o OGR_write.o
 In file included from /usr/include/gdal/ogr_geometry.h:36,
                  from /usr/include/gdal/ogr_feature.h:36,
                  from /usr/include/gdal/ogrsf_frmts.h:35,
                  from OGR_write.cpp:2:
 /usr/include/gdal/cpl_json.h:97:36: error: expected ')' before 'nVal'
    97 |     explicit CPLJSONObject(uint64_t nVal);
       |                           ~        ^~~~~
       |                                    )
 /usr/include/gdal/cpl_json.h:119:41: error: 'uint64_t' has not been declared
   119 |     void Add(const std::string &osName, uint64_t nValue);
       |                                         ^~~~~~~~
 /usr/include/gdal/cpl_json.h:119:10: error: 'void CPLJSONObject::Add(const std::string&, int)' cannot be overloaded with 'void CPLJSONObject::Add(const std::string&, int)'
   119 |     void Add(const std::string &osName, uint64_t nValue);
       |          ^~~
 /usr/include/gdal/cpl_json.h:117:10: note: previous declaration 'void CPLJSONObject::Add(const std::string&, int)'
   117 |     void Add(const std::string &osName, int nValue);
       |          ^~~
 /usr/include/gdal/cpl_json.h:131:41: error: 'uint64_t' has not been declared
   131 |     void Set(const std::string &osName, uint64_t nValue);
       |                                         ^~~~~~~~
 /usr/include/gdal/cpl_json.h:131:10: error: 'void CPLJSONObject::Set(const std::string&, int)' cannot be overloaded with 'void CPLJSONObject::Set(const std::string&, int)'
   131 |     void Set(const std::string &osName, uint64_t nValue);
       |          ^~~
 /usr/include/gdal/cpl_json.h:129:10: note: previous declaration 'void CPLJSONObject::Set(const std::string&, int)'
   129 |     void Set(const std::string &osName, int nValue);
       |          ^~~
 /usr/include/gdal/cpl_json.h:245:14: error: 'uint64_t' has not been declared
   245 |     void Add(uint64_t nValue);
       |              ^~~~~~~~
 /usr/include/gdal/cpl_json.h:245:10: error: 'void CPLJSONArray::Add(int)' cannot be overloaded with 'void CPLJSONArray::Add(int)'
   245 |     void Add(uint64_t nValue);
       |          ^~~
 /usr/include/gdal/cpl_json.h:243:10: note: previous declaration 'void CPLJSONArray::Add(int)'
   243 |     void Add(int nValue);
       |          ^~~

The full buildlog is attached.

Kind Regards,

Bas
-------------- next part --------------
dpkg-checkbuilddeps: error: Unmet build dependencies: r-cran-sp libgdal-dev
W: Unmet build-dependency in source
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building r-cran-rgdal using existing ./r-cran-rgdal_1.6-7+dfsg.orig.tar.xz
dpkg-source: info: building r-cran-rgdal in r-cran-rgdal_1.6-7+dfsg-1.1.debian.tar.xz
dpkg-source: info: building r-cran-rgdal in r-cran-rgdal_1.6-7+dfsg-1.1.dsc
I: Generating source changes file for original dsc
dpkg-genchanges: info: not including original source code in upload
I: Copying COW directory
I: forking: rm -rf /var/cache/pbuilder/build/cow.3036531
I: forking: cp -al /var/cache/pbuilder/base-sid+rebuild.cow /var/cache/pbuilder/build/cow.3036531
I: removed stale ilistfile /var/cache/pbuilder/build/cow.3036531/.ilist
I: forking: chroot /var/cache/pbuilder/build/cow.3036531 cowdancer-ilistcreate /.ilist 'find . -xdev -path ./home -prune -o \( \( -type l -o -type f \) -a -links +1 -print0 \) | xargs -0 stat --format '%d %i ''
I: Invoking pbuilder
I: forking: pbuilder build --debbuildopts  --debbuildopts  --buildplace /var/cache/pbuilder/build/cow.3036531 --buildresult /var/cache/pbuilder/result/ --mirror http://ftp.nl.debian.org/debian/ --distribution sid --no-targz --internal-chrootexec 'chroot /var/cache/pbuilder/build/cow.3036531 cow-shell' /home/bas/tmp/debian/r-cran-rgdal_1.6-7+dfsg-1.1.dsc
I: Running in no-targz mode
I: pbuilder: network access will be disabled during build
I: Current time: Wed Nov  8 16:37:33 CET 2023
I: pbuilder-time-stamp: 1699457853
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Obtaining the cached apt archive contents
I: Copying source file
I: copying [/home/bas/tmp/debian/r-cran-rgdal_1.6-7+dfsg-1.1.dsc]
I: copying [/home/bas/tmp/debian/r-cran-rgdal_1.6-7+dfsg.orig.tar.xz]
I: copying [/home/bas/tmp/debian/r-cran-rgdal_1.6-7+dfsg-1.1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: extracting unsigned source package (r-cran-rgdal_1.6-7+dfsg-1.1.dsc)
dpkg-source: info: extracting r-cran-rgdal in r-cran-rgdal-1.6-7+dfsg
dpkg-source: info: unpacking r-cran-rgdal_1.6-7+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-cran-rgdal_1.6-7+dfsg-1.1.debian.tar.xz
I: Not using root during the build.
I: Installing the build-deps
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint at lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-sp, libgdal-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
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Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-r; however:
  Package dh-r is not installed.
 pbuilder-satisfydepends-dummy depends on r-base-dev; however:
  Package r-base-dev is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-sp; however:
  Package r-cran-sp is not installed.
 pbuilder-satisfydepends-dummy depends on libgdal-dev; however:
  Package libgdal-dev is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
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pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} default-libmysqlclient-dev{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gdal-data{a} gdal-plugins{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libaom-dev{a} libaom3{a} libarchive-zip-perl{a} libarmadillo-dev{a} libarmadillo12{a} libarpack2{a} libarpack2-dev{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libblosc-dev{a} libblosc1{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libcfitsio-dev{a} libcfitsio10{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-openssl-dev{a} libdata-optlist-perl{a} libdatrie1{a} libdav1d-dev{a} libdav1d7{a} libde265-0{a} libde265-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfreexl-dev{a} libfreexl1{a} libfribidi0{a} libfyba-dev{a} libfyba0{a} libgdal-dev{a} libgdal34{a} libgeos-c1v5{a} libgeos-dev{a} libgeos3.12.0{a} libgeotiff-dev{a} libgeotiff5{a} libgfortran-13-dev{a} libgfortran5{a} libgif-dev{a} libgif7{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf4-0-alt{a} libhdf4-alt-dev{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libheif-dev{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjson-c-dev{a} libjson-c5{a} libkml-dev{a} libkmlbase1{a} libkmlconvenience1{a} libkmldom1{a} libkmlengine1{a} libkmlregionator1{a} libkmlxsd1{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} liblerc-dev{a} liblerc4{a} libltdl-dev{a} libltdl7{a} liblwp-mediatypes-perl{a} liblz4-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmariadb-dev{a} libmariadb-dev-compat{a} libmariadb3{a} libminizip-dev{a} libminizip1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnetcdf-dev{a} libnetcdf19{a} libnghttp2-14{a} libnspr4{a} libnss3{a} libnuma1{a} libodbc2{a} libodbccr2{a} libodbcinst2{a} libogdi-dev{a} libogdi4.1{a} libopenjp2-7{a} libopenjp2-7-dev{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libpoppler-dev{a} libpoppler-private-dev{a} libpoppler126{a} libpq-dev{a} libpq5{a} libproj-dev{a} libproj25{a} libpsl5{a} libqhull-dev{a} libqhull-r8.0{a} libqhull8.0{a} libqhullcpp8.0{a} libreadline-dev{a} librtmp1{a} librttopo-dev{a} librttopo1{a} libsharpyuv-dev{a} libsharpyuv0{a} libsm6{a} libsnappy1v5{a} libspatialite-dev{a} libspatialite8{a} libsqlite3-dev{a} libssh2-1{a} libssl-dev{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libsuperlu-dev{a} libsuperlu6{a} libsz2{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} liburiparser-dev{a} liburiparser1{a} libvariable-magic-perl{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libx265-199{a} libx265-dev{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxerces-c-dev{a} libxerces-c3.2{a} libxext6{a} libxft2{a} libxml2{a} libxml2-dev{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} libzstd-dev{a} m4{a} man-db{a} mariadb-common{a} mysql-common{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} proj-data{a} r-base-core{a} r-base-dev{a} r-cran-lattice{a} r-cran-sp{a} ucf{a} unixodbc-common{a} unixodbc-dev{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  bzip2-doc cme curl devscripts git-buildpackage libarchive-cpio-perl libcfitsio-doc libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libheif-plugin-aomenc libheif-plugin-x265 libio-compress-brotli-perl libmail-sendmail-perl libnet-dbus-perl libpng-tools libx11-protocol-perl lynx poppler-data proj-bin publicsuffix r-cran-deldir r-cran-gstat r-cran-knitr r-cran-raster r-cran-rcolorbrewer r-cran-rmarkdown r-cran-sf r-cran-terra r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 290 newly installed, 0 to remove and 0 not upgraded.
Need to get 31.1 MB/169 MB of archives. After unpacking 723 MB will be used.
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Get: 7 http://ftp.nl.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.22-5-1 [1394 kB]
Get: 8 http://ftp.nl.debian.org/debian sid/main amd64 r-cran-sp amd64 1:2.1-1+dfsg-1 [1449 kB]
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Setting up mysql-common (5.8+1.1.0) ...
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Creating config file /etc/papersize with new version
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Setting up libarpack2:amd64 (3.9.1-1) ...
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Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up libxml2-dev:amd64 (2.9.14+dfsg-1.3) ...
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Setting up libfreetype6:amd64 (2.13.2+dfsg-1) ...
Setting up libtiff-dev:amd64 (4.5.1+git230720-1) ...
Setting up libde265-dev:amd64 (1.0.12-2) ...
Setting up libopenjp2-7-dev:amd64 (2.5.0-2) ...
Setting up gfortran-13 (13.2.0-6) ...
Setting up libkmlregionator1:amd64 (1.3.0-10) ...
Setting up libgeos-dev (3.12.0-1) ...
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Setting up liblapack-dev:amd64 (3.11.0-2) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
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Setting up libx265-199:amd64 (3.5-2+b1) ...
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Setting up unixodbc-dev:amd64 (2.3.12-1) ...
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Setting up fontconfig (2.14.2-6) ...
Regenerating fonts cache... done.
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Setting up libcfitsio-dev:amd64 (4.3.0-2) ...
Setting up libxerces-c3.2:amd64 (3.2.4+debian-1) ...
Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
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Setting up libpango-1.0-0:amd64 (1.51.0+ds-3) ...
Setting up libxext6:amd64 (2:1.3.4-1+b1) ...
Setting up libwww-curl-perl:amd64 (4.17-10) ...
Setting up man-db (2.12.0-1) ...
Building database of manual pages ...
Setting up gfortran (4:13.2.0-1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:amd64 (1.18.0-1) ...
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Setting up libspatialite8:amd64 (5.1.0-1) ...
Setting up libx265-dev:amd64 (3.5-2+b1) ...
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Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libspatialite-dev:amd64 (5.1.0-1) ...
Setting up libxt6:amd64 (1:1.2.1-1.1) ...
Setting up libpoppler126:amd64 (22.12.0-2+b1) ...
Setting up libhdf5-103-1:amd64 (1.10.10+repack-3) ...
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Setting up libxss1:amd64 (1:1.2.3-1) ...
Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-3) ...
Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-3) ...
Setting up libhdf5-hl-100:amd64 (1.10.10+repack-3) ...
Setting up default-libmysqlclient-dev:amd64 (1.1.0) ...
Setting up libpoppler-dev:amd64 (22.12.0-2+b1) ...
Setting up libxft2:amd64 (2.3.6-1) ...
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Setting up libpoppler-private-dev:amd64 (22.12.0-2+b1) ...
Setting up debhelper (13.11.7) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up libhdf5-hl-cpp-100:amd64 (1.10.10+repack-3) ...
Setting up r-base-core (4.3.2-1) ...

Creating config file /etc/R/Renviron with new version
Setting up libhdf5-fortran-102:amd64 (1.10.10+repack-3) ...
Setting up r-cran-lattice (0.22-5-1) ...
Setting up libnetcdf19:amd64 (1:4.9.2-2) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up libhdf5-hl-fortran-100:amd64 (1.10.10+repack-3) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up r-base-dev (4.3.2-1) ...
Setting up libmoose-perl:amd64 (2.2206-1) ...
Setting up r-cran-sp (1:2.1-1+dfsg-1) ...
Setting up libhdf5-dev (1.10.10+repack-3) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libnetcdf-dev (1:4.9.2-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up libarmadillo-dev (1:12.6.4+dfsg-1) ...
Setting up libhdf4-alt-dev (4.2.16-3) ...
Setting up dh-r (20231024) ...
Setting up libheif-plugin-dav1d:amd64 (1.17.1-1+b1) ...
Setting up libheif-plugin-libde265:amd64 (1.17.1-1+b1) ...
Setting up libheif1:amd64 (1.17.1-1+b1) ...
Setting up libheif-dev:amd64 (1.17.1-1+b1) ...
Setting up libgdal34 (3.8.0~rc1+dfsg-1~exp1) ...
Setting up libgdal-dev (3.8.0~rc1+dfsg-1~exp1) ...
Processing triggers for libc-bin (2.37-12) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Copying back the cached apt archive contents
I: new cache content 'dh-r_20231024_all.deb' added
I: new cache content 'libmoose-perl_2.2206-1_amd64.deb' added
I: new cache content 'r-cran-sp_1%3a2.1-1+dfsg-1_amd64.deb' added
I: new cache content 'r-base-core_4.3.2-1_amd64.deb' added
I: new cache content 'r-base-dev_4.3.2-1_all.deb' added
I: new cache content 'r-cran-lattice_0.22-5-1_amd64.deb' added
I: Building the package
I: Running cd /build/r-cran-rgdal-1.6-7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us -uc  && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-genchanges -S  > ../r-cran-rgdal_1.6-7+dfsg-1.1_source.changes
dpkg-buildpackage: info: source package r-cran-rgdal
dpkg-buildpackage: info: source version 1.6-7+dfsg-1.1
dpkg-buildpackage: info: source distribution UNRELEASED
dpkg-buildpackage: info: source changed by Bas Couwenberg <sebastic at debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 dpkg-source -b .
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building r-cran-rgdal using existing ./r-cran-rgdal_1.6-7+dfsg.orig.tar.xz
dpkg-source: info: building r-cran-rgdal in r-cran-rgdal_1.6-7+dfsg-1.1.debian.tar.xz
dpkg-source: info: building r-cran-rgdal in r-cran-rgdal_1.6-7+dfsg-1.1.dsc
 debian/rules binary
dh binary --buildsystem R
   dh_update_autotools_config -O--buildsystem=R
   dh_autoreconf -O--buildsystem=R
   dh_auto_configure -O--buildsystem=R
   dh_auto_build -O--buildsystem=R
   dh_auto_test -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=R
   dh_prep -O--buildsystem=R
   dh_auto_install --destdir=debian/r-cran-rgdal/ -O--buildsystem=R
I: R packages needed for DEP8: 
I: R Package: rgdal Version: 1.6-7
I: Building using R version 4.3.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Wed, 08 Nov 2023 16:37:30 +0100
	mkdir -p /build/r-cran-rgdal-1.6-7\+dfsg/debian/r-cran-rgdal/usr/lib/R/site-library
	R CMD INSTALL -l /build/r-cran-rgdal-1.6-7\+dfsg/debian/r-cran-rgdal/usr/lib/R/site-library --clean . "--built-timestamp='Wed, 08 Nov 2023 16:37:30 +0100'"
* installing *source* package 'rgdal' ...
files 'inst/doc/CRS_projections_transformations.html', 'inst/doc/PROJ6_GDAL3.html' are missing
** using staged installation
configure: R_HOME: /usr/lib/R
configure: CC: gcc
configure: CXX: g++ -std=gnu++17
configure: CFLAGS: -g -O2 -ffile-prefix-map=/build/r-cran-rgdal-1.6-7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
configure: CPPFLAGS: -Wdate-time -D_FORTIFY_SOURCE=2
configure: CXXFLAGS: -g -O2 -ffile-prefix-map=/build/r-cran-rgdal-1.6-7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
configure: LDFLAGS: -Wl,-z,relro
configure: LDFLAGS: -Wl,-z,relro
configure: CXX17 is: g++, CXX17STD is: -std=gnu++17
configure: CXX is: g++ -std=gnu++17
configure: C++17 support available
configure: rgdal: 1.6-7
checking for /usr/bin/svnversion... no
configure: svn revision: 1203
checking for gdal-config... /usr/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 3.8.0
checking GDAL version != 3.6.0... yes
checking GDAL version >= 1.11.4... yes
checking GDAL version <= 2.5 or >= 3.0... yes
checking GDAL: linking with --libs only... yes
checking GDAL: gdal-config data directory readable... yes
checking GDAL: /usr/share/gdal/stateplane.csv readable... yes
configure: pkg-config proj exists, will use it
configure: PROJ version: 9.3.0
configure: PROJ CPP flags: -DPROJ_H_API -I/usr/include/x86_64-linux-gnu -I/usr/include/webp  
configure: PROJ LIBS: -lproj  
checking PROJ header API:... yes
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether g++ -std=gnu++17 accepts -g... yes
checking for g++ -std=gnu++17 option to enable C++11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for proj.h... yes
checking for proj_context_create in -lproj... yes
checking Using GDAL < 3 with PROJ >= 6... no
checking PROJ version >= 4.8.0... yes
checking PROJ: proj.db found and readable... yes
configure: Package CPP flags:  -I/usr/include/gdal -I/usr/include/x86_64-linux-gnu -I/usr/include/webp  -DPROJ_H_API
configure: Package LIBS:  -L/usr/lib/x86_64-linux-gnu -lgdal -lproj 
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: 'gcc (Debian 13.2.0-6) 13.2.0'
using C++ compiler: 'g++ (Debian 13.2.0-6) 13.2.0'
using C++17
make[1]: Entering directory '/build/r-cran-rgdal-1.6-7+dfsg/src'
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include/x86_64-linux-gnu -I/usr/include/webp  -DPROJ_H_API -I'/usr/lib/R/site-library/sp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2  -c OGR_write.cpp -o OGR_write.o
In file included from /usr/include/gdal/ogr_geometry.h:36,
                 from /usr/include/gdal/ogr_feature.h:36,
                 from /usr/include/gdal/ogrsf_frmts.h:35,
                 from OGR_write.cpp:2:
/usr/include/gdal/cpl_json.h:97:36: error: expected ')' before 'nVal'
   97 |     explicit CPLJSONObject(uint64_t nVal);
      |                           ~        ^~~~~
      |                                    )
/usr/include/gdal/cpl_json.h:119:41: error: 'uint64_t' has not been declared
  119 |     void Add(const std::string &osName, uint64_t nValue);
      |                                         ^~~~~~~~
/usr/include/gdal/cpl_json.h:119:10: error: 'void CPLJSONObject::Add(const std::string&, int)' cannot be overloaded with 'void CPLJSONObject::Add(const std::string&, int)'
  119 |     void Add(const std::string &osName, uint64_t nValue);
      |          ^~~
/usr/include/gdal/cpl_json.h:117:10: note: previous declaration 'void CPLJSONObject::Add(const std::string&, int)'
  117 |     void Add(const std::string &osName, int nValue);
      |          ^~~
/usr/include/gdal/cpl_json.h:131:41: error: 'uint64_t' has not been declared
  131 |     void Set(const std::string &osName, uint64_t nValue);
      |                                         ^~~~~~~~
/usr/include/gdal/cpl_json.h:131:10: error: 'void CPLJSONObject::Set(const std::string&, int)' cannot be overloaded with 'void CPLJSONObject::Set(const std::string&, int)'
  131 |     void Set(const std::string &osName, uint64_t nValue);
      |          ^~~
/usr/include/gdal/cpl_json.h:129:10: note: previous declaration 'void CPLJSONObject::Set(const std::string&, int)'
  129 |     void Set(const std::string &osName, int nValue);
      |          ^~~
/usr/include/gdal/cpl_json.h:245:14: error: 'uint64_t' has not been declared
  245 |     void Add(uint64_t nValue);
      |              ^~~~~~~~
/usr/include/gdal/cpl_json.h:245:10: error: 'void CPLJSONArray::Add(int)' cannot be overloaded with 'void CPLJSONArray::Add(int)'
  245 |     void Add(uint64_t nValue);
      |          ^~~
/usr/include/gdal/cpl_json.h:243:10: note: previous declaration 'void CPLJSONArray::Add(int)'
  243 |     void Add(int nValue);
      |          ^~~
make[1]: *** [/usr/lib/R/etc/Makeconf:200: OGR_write.o] Error 1
make[1]: Leaving directory '/build/r-cran-rgdal-1.6-7+dfsg/src'
make[1]: Entering directory '/build/r-cran-rgdal-1.6-7+dfsg/src'
make[1]: Leaving directory '/build/r-cran-rgdal-1.6-7+dfsg/src'
ERROR: compilation failed for package 'rgdal'
* removing '/build/r-cran-rgdal-1.6-7+dfsg/debian/r-cran-rgdal/usr/lib/R/site-library/rgdal'
dh_auto_install: error: R CMD INSTALL -l /build/r-cran-rgdal-1.6-7\+dfsg/debian/r-cran-rgdal/usr/lib/R/site-library --clean . "--built-timestamp='Wed, 08 Nov 2023 16:37:30 +0100'" returned exit code 1
make: *** [debian/rules:4: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
I: copying local configuration
E: Failed autobuilding of package
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: Cleaning COW directory
I: forking: rm -rf /var/cache/pbuilder/build/cow.3036531