[R-pkg-team] Bug#1055590: r-cran-sf: FTBFS with GDAL 3.8.0
Bas Couwenberg
sebastic at xs4all.nl
Wed Nov 8 15:48:04 GMT 2023
Source: r-cran-sf
Version: 1.0-14+dfsg-1
Severity: important
Tags: ftbfs
User: debian-gis at lists.debian.org
Usertags: gdal-3.8
Dear Maintainer,
Your package FTBFS with GDAL 3.8.0 from experimental:
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gdal_read.cpp -o gdal_read.o
In file included from /usr/include/gdal/ogr_geometry.h:36,
from /usr/include/gdal/ogr_feature.h:36,
from /usr/include/gdal/ogrsf_frmts.h:35,
from gdal_read.cpp:4:
/usr/include/gdal/cpl_json.h:97:36: error: expected ')' before 'nVal'
97 | explicit CPLJSONObject(uint64_t nVal);
| ~ ^~~~~
| )
/usr/include/gdal/cpl_json.h:119:41: error: 'uint64_t' has not been declared
119 | void Add(const std::string &osName, uint64_t nValue);
| ^~~~~~~~
/usr/include/gdal/cpl_json.h:119:10: error: 'void CPLJSONObject::Add(const std::string&, int)' cannot be overloaded with 'void CPLJSONObject::Add(const std::string&, int)'
119 | void Add(const std::string &osName, uint64_t nValue);
| ^~~
/usr/include/gdal/cpl_json.h:117:10: note: previous declaration 'void CPLJSONObject::Add(const std::string&, int)'
117 | void Add(const std::string &osName, int nValue);
| ^~~
/usr/include/gdal/cpl_json.h:131:41: error: 'uint64_t' has not been declared
131 | void Set(const std::string &osName, uint64_t nValue);
| ^~~~~~~~
/usr/include/gdal/cpl_json.h:131:10: error: 'void CPLJSONObject::Set(const std::string&, int)' cannot be overloaded with 'void CPLJSONObject::Set(const std::string&, int)'
131 | void Set(const std::string &osName, uint64_t nValue);
| ^~~
/usr/include/gdal/cpl_json.h:129:10: note: previous declaration 'void CPLJSONObject::Set(const std::string&, int)'
129 | void Set(const std::string &osName, int nValue);
| ^~~
/usr/include/gdal/cpl_json.h:245:14: error: 'uint64_t' has not been declared
245 | void Add(uint64_t nValue);
| ^~~~~~~~
/usr/include/gdal/cpl_json.h:245:10: error: 'void CPLJSONArray::Add(int)' cannot be overloaded with 'void CPLJSONArray::Add(int)'
245 | void Add(uint64_t nValue);
| ^~~
/usr/include/gdal/cpl_json.h:243:10: note: previous declaration 'void CPLJSONArray::Add(int)'
243 | void Add(int nValue);
| ^~~
The full buildlog is attached.
Kind Regards,
Bas
-------------- next part --------------
dpkg-checkbuilddeps: error: Unmet build dependencies: r-cran-classint r-cran-dbi r-cran-magrittr r-cran-rcpp r-cran-s2 (>= 1.1.0) r-cran-units (>= 0.7-0) libgdal-dev
[1;33mW: Unmet build-dependency in source[0m
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building r-cran-sf using existing ./r-cran-sf_1.0-14+dfsg.orig.tar.xz
dpkg-source: info: building r-cran-sf in r-cran-sf_1.0-14+dfsg-1.1.debian.tar.xz
dpkg-source: info: building r-cran-sf in r-cran-sf_1.0-14+dfsg-1.1.dsc
[0mI: Generating source changes file for original dsc[0m
dpkg-genchanges: info: not including original source code in upload
I: Copying COW directory
I: forking: rm -rf /var/cache/pbuilder/build/cow.3062380
I: forking: cp -al /var/cache/pbuilder/base-sid+rebuild.cow /var/cache/pbuilder/build/cow.3062380
I: removed stale ilistfile /var/cache/pbuilder/build/cow.3062380/.ilist
I: forking: chroot /var/cache/pbuilder/build/cow.3062380 cowdancer-ilistcreate /.ilist 'find . -xdev -path ./home -prune -o \( \( -type l -o -type f \) -a -links +1 -print0 \) | xargs -0 stat --format '%d %i ''
I: Invoking pbuilder
I: forking: pbuilder build --debbuildopts --debbuildopts --buildplace /var/cache/pbuilder/build/cow.3062380 --buildresult /var/cache/pbuilder/result/ --mirror http://ftp.nl.debian.org/debian/ --distribution sid --no-targz --internal-chrootexec 'chroot /var/cache/pbuilder/build/cow.3062380 cow-shell' /home/bas/tmp/debian/r-cran-sf_1.0-14+dfsg-1.1.dsc
[0mI: Running in no-targz mode[0m
[0mI: pbuilder: network access will be disabled during build[0m
[0mI: Current time: Wed Nov 8 16:42:36 CET 2023[0m
[0mI: pbuilder-time-stamp: 1699458156[0m
[0mI: copying local configuration[0m
[1;33mW: --override-config is not set; not updating apt.conf Read the manpage for details.[0m
[0mI: mounting /proc filesystem[0m
[0mI: mounting /sys filesystem[0m
[0mI: creating /{dev,run}/shm[0m
[0mI: mounting /dev/pts filesystem[0m
[0mI: redirecting /dev/ptmx to /dev/pts/ptmx[0m
[0mI: policy-rc.d already exists[0m
[0mI: Obtaining the cached apt archive contents[0m
[0mI: Copying source file[0m
[0mI: copying [/home/bas/tmp/debian/r-cran-sf_1.0-14+dfsg-1.1.dsc][0m
[0mI: copying [/home/bas/tmp/debian/r-cran-sf_1.0-14+dfsg.orig.tar.xz][0m
[0mI: copying [/home/bas/tmp/debian/r-cran-sf_1.0-14+dfsg-1.1.debian.tar.xz][0m
[0mI: Extracting source[0m
dpkg-source: warning: extracting unsigned source package (r-cran-sf_1.0-14+dfsg-1.1.dsc)
dpkg-source: info: extracting r-cran-sf in r-cran-sf-1.0-14+dfsg
dpkg-source: info: unpacking r-cran-sf_1.0-14+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-cran-sf_1.0-14+dfsg-1.1.debian.tar.xz
[0mI: Not using root during the build.[0m
[0mI: Installing the build-deps[0m
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint at lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-classint, r-cran-dbi, r-cran-magrittr, r-cran-rcpp, r-cran-s2 (>= 1.1.0), r-cran-units (>= 0.7-0), libgdal-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 14516 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-r; however:
Package dh-r is not installed.
pbuilder-satisfydepends-dummy depends on r-base-dev; however:
Package r-base-dev is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-classint; however:
Package r-cran-classint is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-dbi; however:
Package r-cran-dbi is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-magrittr; however:
Package r-cran-magrittr is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-rcpp; however:
Package r-cran-rcpp is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-s2 (>= 1.1.0); however:
Package r-cran-s2 is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-units (>= 0.7-0); however:
Package r-cran-units is not installed.
pbuilder-satisfydepends-dummy depends on libgdal-dev; however:
Package libgdal-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} default-libmysqlclient-dev{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gdal-data{a} gdal-plugins{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libaom-dev{a} libaom3{a} libarchive-zip-perl{a} libarmadillo-dev{a} libarmadillo12{a} libarpack2{a} libarpack2-dev{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libblosc-dev{a} libblosc1{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libcfitsio-dev{a} libcfitsio10{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-openssl-dev{a} 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libsub-override-perl{a} libsuperlu-dev{a} libsuperlu6{a} libsz2{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libudunits2-0{a} libudunits2-data{a} liburi-perl{a} liburiparser-dev{a} liburiparser1{a} libvariable-magic-perl{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libx265-199{a} libx265-dev{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxerces-c-dev{a} libxerces-c3.2{a} libxext6{a} libxft2{a} libxml2{a} libxml2-dev{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} libzstd-dev{a} littler{a} m4{a} man-db{a} mariadb-common{a} mysql-common{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} proj-data{a} r-base-core{a} r-base-dev{a} r-cran-class{a} r-cran-classint{a} r-cran-dbi{a} r-cran-e1071{a} r-cran-kernsmooth{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-pkgkitten{a} r-cran-proxy{a} r-cran-rcpp{a} r-cran-s2{a} r-cran-units{a} r-cran-wk{a} ucf{a} unixodbc-common{a} unixodbc-dev{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
bzip2-doc cme curl devscripts git-buildpackage libarchive-cpio-perl libcfitsio-doc libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libheif-plugin-aomenc libheif-plugin-x265 libio-compress-brotli-perl libmail-sendmail-perl libnet-dbus-perl libpng-tools libx11-protocol-perl lynx poppler-data proj-bin publicsuffix r-cran-bit64 r-cran-cba r-cran-crayon r-cran-dplyr r-cran-ggplot2 r-cran-knitr r-cran-pillar r-cran-readr r-cran-rmarkdown r-cran-sf r-cran-spdata r-cran-testthat r-cran-tibble r-cran-tinytest r-cran-vctrs r-cran-vdiffr r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs
0 packages upgraded, 305 newly installed, 0 to remove and 0 not upgraded.
Need to get 6883 kB/175 MB of archives. After unpacking 740 MB will be used.
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Get: 1 http://ftp.nl.debian.org/debian sid/main amd64 libhdf4-0-alt amd64 4.2.16-3 [264 kB]
Get: 2 http://ftp.nl.debian.org/debian sid/main amd64 libhdf4-alt-dev amd64 4.2.16-3 [358 kB]
Get: 3 http://ftp.nl.debian.org/debian sid/main amd64 r-cran-littler amd64 0.3.18-2 [98.1 kB]
Get: 4 http://ftp.nl.debian.org/debian sid/main amd64 littler all 0.3.18-2 [14.8 kB]
Get: 5 http://ftp.nl.debian.org/debian sid/main amd64 r-cran-classint amd64 0.4-10+dfsg-1 [109 kB]
Get: 6 http://ftp.nl.debian.org/debian sid/main amd64 r-cran-rcpp amd64 1.0.11-1 [2064 kB]
Get: 7 http://ftp.nl.debian.org/debian sid/main amd64 r-cran-wk amd64 0.9.0-1 [1782 kB]
Get: 8 http://ftp.nl.debian.org/debian sid/main amd64 r-cran-s2 amd64 1.1.4-1 [1924 kB]
Get: 9 http://ftp.nl.debian.org/debian sid/main amd64 r-cran-units amd64 0.8-4+dfsg-2 [270 kB]
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Setting up libfreetype6:amd64 (2.13.2+dfsg-1) ...
Setting up libtiff-dev:amd64 (4.5.1+git230720-1) ...
Setting up libde265-dev:amd64 (1.0.12-2) ...
Setting up libopenjp2-7-dev:amd64 (2.5.0-2) ...
Setting up gfortran-13 (13.2.0-6) ...
Setting up libkmlregionator1:amd64 (1.3.0-10) ...
Setting up libgeos-dev (3.12.0-1) ...
Setting up libdav1d-dev:amd64 (1.3.0-2) ...
Setting up liblapack-dev:amd64 (3.11.0-2) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
Setting up libdata-optlist-perl (0.114-1) ...
Setting up pkg-config:amd64 (1.8.1-1) ...
Setting up libx265-199:amd64 (3.5-2+b1) ...
Setting up libmariadb-dev (1:10.11.5-3) ...
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Setting up libcurl4:amd64 (8.4.0-2) ...
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Setting up libfontconfig1:amd64 (2.14.2-6) ...
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Setting up libsuperlu-dev:amd64 (6.0.1+dfsg1-1) ...
Setting up libsm6:amd64 (2:1.2.3-1) ...
Setting up unixodbc-dev:amd64 (2.3.12-1) ...
Setting up libxmuu1:amd64 (2:1.1.3-3) ...
Setting up libarmadillo12 (1:12.6.4+dfsg-1) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libkml-dev:amd64 (1.3.0-10) ...
Setting up libmariadb-dev-compat (1:10.11.5-3) ...
Setting up fontconfig (2.14.2-6) ...
Regenerating fonts cache... done.
Setting up libarpack2-dev:amd64 (3.9.1-1) ...
Setting up libcfitsio-dev:amd64 (4.3.0-2) ...
Setting up libxerces-c3.2:amd64 (3.2.4+debian-1) ...
Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
Setting up libproj25:amd64 (9.3.0-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:amd64 (0.015-2+b1) ...
Setting up libpango-1.0-0:amd64 (1.51.0+ds-3) ...
Setting up libxext6:amd64 (2:1.3.4-1+b1) ...
Setting up libwww-curl-perl:amd64 (4.17-10) ...
Setting up man-db (2.12.0-1) ...
Building database of manual pages ...
Setting up gfortran (4:13.2.0-1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:amd64 (1.18.0-1) ...
Setting up libgeotiff5:amd64 (1.7.1-3) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libcurl4-openssl-dev:amd64 (8.4.0-2) ...
Setting up libxerces-c-dev:amd64 (3.2.4+debian-1) ...
Setting up libspatialite8:amd64 (5.1.0-1) ...
Setting up libx265-dev:amd64 (3.5-2+b1) ...
Setting up libproj-dev:amd64 (9.3.0-1) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libspatialite-dev:amd64 (5.1.0-1) ...
Setting up libxt6:amd64 (1:1.2.1-1.1) ...
Setting up libpoppler126:amd64 (22.12.0-2+b1) ...
Setting up libhdf5-103-1:amd64 (1.10.10+repack-3) ...
Setting up xauth (1:1.1.2-1) ...
Setting up libhdf5-cpp-103-1:amd64 (1.10.10+repack-3) ...
Setting up libxss1:amd64 (1:1.2.3-1) ...
Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-3) ...
Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-3) ...
Setting up libhdf5-hl-100:amd64 (1.10.10+repack-3) ...
Setting up default-libmysqlclient-dev:amd64 (1.1.0) ...
Setting up libpoppler-dev:amd64 (22.12.0-2+b1) ...
Setting up libxft2:amd64 (2.3.6-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libgeotiff-dev:amd64 (1.7.1-3) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libtk8.6:amd64 (8.6.13-2) ...
Setting up libpoppler-private-dev:amd64 (22.12.0-2+b1) ...
Setting up debhelper (13.11.7) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up libhdf5-hl-cpp-100:amd64 (1.10.10+repack-3) ...
Setting up r-base-core (4.3.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up libhdf5-fortran-102:amd64 (1.10.10+repack-3) ...
Setting up libnetcdf19:amd64 (1:4.9.2-2) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up libhdf5-hl-fortran-100:amd64 (1.10.10+repack-3) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up r-cran-wk (0.9.0-1) ...
Setting up r-cran-proxy (0.4-27-1) ...
Setting up r-cran-pkgkitten (0.2.3-1) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-cran-littler (0.3.18-2) ...
Setting up r-cran-rcpp (1.0.11-1) ...
Setting up r-base-dev (4.3.2-1) ...
Setting up littler (0.3.18-2) ...
Setting up libmoose-perl:amd64 (2.2206-1) ...
Setting up r-cran-s2 (1.1.4-1) ...
Setting up r-cran-dbi (1.1.3-1) ...
Setting up r-cran-mass (7.3-60-2) ...
Setting up libhdf5-dev (1.10.10+repack-3) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libnetcdf-dev (1:4.9.2-2) ...
Setting up r-cran-units (0.8-4+dfsg-2) ...
Setting up r-cran-kernsmooth (2.23-22-1) ...
Setting up r-cran-class (7.3-22-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up libarmadillo-dev (1:12.6.4+dfsg-1) ...
Setting up libhdf4-alt-dev (4.2.16-3) ...
Setting up r-cran-e1071 (1.7-13-1) ...
Setting up dh-r (20231024) ...
Setting up r-cran-classint (0.4-10+dfsg-1) ...
Setting up libheif-plugin-dav1d:amd64 (1.17.1-1+b1) ...
Setting up libheif1:amd64 (1.17.1-1+b1) ...
Setting up libheif-dev:amd64 (1.17.1-1+b1) ...
Setting up libgdal34 (3.8.0~rc1+dfsg-1~exp1) ...
Setting up libheif-plugin-libde265:amd64 (1.17.1-1+b1) ...
Setting up libgdal-dev (3.8.0~rc1+dfsg-1~exp1) ...
Processing triggers for libc-bin (2.37-12) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
[0mI: Copying back the cached apt archive contents[0m
[0mI: new cache content 'r-cran-units_0.8-4+dfsg-2_amd64.deb' added[0m
[0mI: new cache content 'r-cran-wk_0.9.0-1_amd64.deb' added[0m
[0mI: new cache content 'r-cran-rcpp_1.0.11-1_amd64.deb' added[0m
[0mI: new cache content 'r-cran-littler_0.3.18-2_amd64.deb' added[0m
[0mI: new cache content 'littler_0.3.18-2_all.deb' added[0m
[0mI: new cache content 'r-cran-s2_1.1.4-1_amd64.deb' added[0m
[0mI: new cache content 'r-cran-classint_0.4-10+dfsg-1_amd64.deb' added[0m
[0mI: Building the package[0m
[0mI: Running cd /build/r-cran-sf-1.0-14+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us -uc && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-genchanges -S > ../r-cran-sf_1.0-14+dfsg-1.1_source.changes[0m
dpkg-buildpackage: info: source package r-cran-sf
dpkg-buildpackage: info: source version 1.0-14+dfsg-1.1
dpkg-buildpackage: info: source distribution UNRELEASED
dpkg-buildpackage: info: source changed by Bas Couwenberg <sebastic at debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
dpkg-source -b .
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building r-cran-sf using existing ./r-cran-sf_1.0-14+dfsg.orig.tar.xz
dpkg-source: info: building r-cran-sf in r-cran-sf_1.0-14+dfsg-1.1.debian.tar.xz
dpkg-source: info: building r-cran-sf in r-cran-sf_1.0-14+dfsg-1.1.dsc
debian/rules binary
dh binary --buildsystem R
dh_update_autotools_config -O--buildsystem=R
dh_autoreconf -O--buildsystem=R
dh_auto_configure -O--buildsystem=R
dh_auto_build -O--buildsystem=R
dh_auto_test -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=R
dh_prep -O--buildsystem=R
dh_auto_install --destdir=debian/r-cran-sf/ -O--buildsystem=R
I: R packages needed for DEP8: blob, covr, dplyr (>= 0.8-3), ggplot2, knitr, lwgeom (>= 0.2-1), maps, matrix, pbapply, pillar, raster, rlang, rmarkdown, rpostgresql, rsqlite, sp (>= 1.2-4), spatstat (>= 2.0-1), spatstat.geom, spatstat.random, spatstat.linnet, spatstat.utils, stars (>= 0.2-0), terra, testthat (>= 3.0.0), tibble (>= 1.4.1), tidyr (>= 1.2.0), tidyselect (>= 1.0.0), vctrs, wk
I: R Package: sf Version: 1.0-14
I: Building using R version 4.3.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Wed, 08 Nov 2023 16:42:32 +0100
mkdir -p /build/r-cran-sf-1.0-14\+dfsg/debian/r-cran-sf/usr/lib/R/site-library
R CMD INSTALL -l /build/r-cran-sf-1.0-14\+dfsg/debian/r-cran-sf/usr/lib/R/site-library --clean . "--built-timestamp='Wed, 08 Nov 2023 16:42:32 +0100'"
* installing *source* package 'sf' ...
files 'inst/doc/sf1.html', 'inst/doc/sf2.html', 'inst/doc/sf3.html', 'inst/doc/sf4.html', 'inst/doc/sf5.html', 'inst/doc/sf6.html', 'inst/doc/sf7.html' are missing
** using staged installation
configure: CC: gcc
configure: CXX: g++ -std=gnu++17
checking for gdal-config... /usr/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 3.8.0
checking GDAL version >= 2.0.1... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for gdal.h... yes
checking GDAL: linking with --libs only... yes
checking GDAL: /usr/share/gdal/pcs.csv readable... no
checking GDAL: checking whether PROJ is available for linking:... yes
checking GDAL: checking whether PROJ is available for running:... yes
configure: GDAL: 3.8.0
configure: pkg-config proj exists, will use it
configure: using proj.h.
configure: PROJ: 9.3.0
checking PROJ: checking whether PROJ and sqlite3 are available for linking:... yes
checking for geos-config... /usr/bin/geos-config
checking geos-config usability... yes
configure: GEOS: 3.12.0
checking GEOS version >= 3.4.0... yes
checking for geos_c.h... yes
checking geos: linking with -L/usr/lib/x86_64-linux-gnu -lgeos_c... yes
configure: Package CPP flags: -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include
configure: Package LIBS: -lproj -L/usr/lib/x86_64-linux-gnu -lgdal -L/usr/lib/x86_64-linux-gnu -lgeos_c
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: 'g++ (Debian 13.2.0-6) 13.2.0'
make[1]: Entering directory '/build/r-cran-sf-1.0-14+dfsg/src'
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c bbox.cpp -o bbox.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gdal.cpp -o gdal.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gdal_geom.cpp -o gdal_geom.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c gdal_read.cpp -o gdal_read.o
In file included from /usr/include/gdal/ogr_geometry.h:36,
from /usr/include/gdal/ogr_feature.h:36,
from /usr/include/gdal/ogrsf_frmts.h:35,
from gdal_read.cpp:4:
/usr/include/gdal/cpl_json.h:97:36: error: expected ')' before 'nVal'
97 | explicit CPLJSONObject(uint64_t nVal);
| ~ ^~~~~
| )
/usr/include/gdal/cpl_json.h:119:41: error: 'uint64_t' has not been declared
119 | void Add(const std::string &osName, uint64_t nValue);
| ^~~~~~~~
/usr/include/gdal/cpl_json.h:119:10: error: 'void CPLJSONObject::Add(const std::string&, int)' cannot be overloaded with 'void CPLJSONObject::Add(const std::string&, int)'
119 | void Add(const std::string &osName, uint64_t nValue);
| ^~~
/usr/include/gdal/cpl_json.h:117:10: note: previous declaration 'void CPLJSONObject::Add(const std::string&, int)'
117 | void Add(const std::string &osName, int nValue);
| ^~~
/usr/include/gdal/cpl_json.h:131:41: error: 'uint64_t' has not been declared
131 | void Set(const std::string &osName, uint64_t nValue);
| ^~~~~~~~
/usr/include/gdal/cpl_json.h:131:10: error: 'void CPLJSONObject::Set(const std::string&, int)' cannot be overloaded with 'void CPLJSONObject::Set(const std::string&, int)'
131 | void Set(const std::string &osName, uint64_t nValue);
| ^~~
/usr/include/gdal/cpl_json.h:129:10: note: previous declaration 'void CPLJSONObject::Set(const std::string&, int)'
129 | void Set(const std::string &osName, int nValue);
| ^~~
/usr/include/gdal/cpl_json.h:245:14: error: 'uint64_t' has not been declared
245 | void Add(uint64_t nValue);
| ^~~~~~~~
/usr/include/gdal/cpl_json.h:245:10: error: 'void CPLJSONArray::Add(int)' cannot be overloaded with 'void CPLJSONArray::Add(int)'
245 | void Add(uint64_t nValue);
| ^~~
/usr/include/gdal/cpl_json.h:243:10: note: previous declaration 'void CPLJSONArray::Add(int)'
243 | void Add(int nValue);
| ^~~
make[1]: *** [/usr/lib/R/etc/Makeconf:200: gdal_read.o] Error 1
make[1]: Leaving directory '/build/r-cran-sf-1.0-14+dfsg/src'
make[1]: Entering directory '/build/r-cran-sf-1.0-14+dfsg/src'
make[1]: Leaving directory '/build/r-cran-sf-1.0-14+dfsg/src'
ERROR: compilation failed for package 'sf'
* removing '/build/r-cran-sf-1.0-14+dfsg/debian/r-cran-sf/usr/lib/R/site-library/sf'
dh_auto_install: error: R CMD INSTALL -l /build/r-cran-sf-1.0-14\+dfsg/debian/r-cran-sf/usr/lib/R/site-library --clean . "--built-timestamp='Wed, 08 Nov 2023 16:42:32 +0100'" returned exit code 1
make: *** [debian/rules:4: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
[0mI: copying local configuration[0m
[0;31mE: Failed autobuilding of package[0m
[0mI: unmounting dev/ptmx filesystem[0m
[0mI: unmounting dev/pts filesystem[0m
[0mI: unmounting dev/shm filesystem[0m
[0mI: unmounting proc filesystem[0m
[0mI: unmounting sys filesystem[0m
I: Cleaning COW directory
I: forking: rm -rf /var/cache/pbuilder/build/cow.3062380
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